Wall clock time and date at job start Mon Mar 30 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38349 * 119.93313 * 2 1 4 4 C 1.38359 * 120.26720 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.93196 * 180.02562 * 4 3 2 6 6 C 1.37974 * 120.13175 * 359.97438 * 4 3 2 7 7 C 1.39466 * 119.86728 * 0.02562 * 6 4 3 8 8 C 1.48206 * 120.13441 * 180.02562 * 7 6 4 9 9 C 1.37223 * 122.47321 * 179.97438 * 8 7 6 10 10 S 1.71010 * 109.08177 * 179.72887 * 9 8 7 11 11 C 1.75991 * 90.62879 * 0.26541 * 10 9 8 12 12 C 1.39874 * 125.28805 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99495 * 179.97438 * 12 11 10 14 14 C 1.40174 * 120.00441 * 359.97280 * 12 11 10 15 15 N 1.30732 * 120.00004 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00102 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47195 * 89.99601 * 16 14 12 18 18 H 1.48495 * 109.47110 * 210.00161 * 16 14 12 19 19 H 1.48505 * 109.46687 * 329.99930 * 16 14 12 20 20 N 1.31245 * 122.47547 * 0.23473 * 8 7 6 21 21 C 1.37980 * 119.93159 * 180.29612 * 2 1 3 22 22 H 1.08993 * 109.47015 * 90.00445 * 1 2 3 23 23 H 1.09006 * 109.47022 * 210.00382 * 1 2 3 24 24 H 1.08999 * 109.47155 * 329.99900 * 1 2 3 25 25 H 1.08002 * 119.86887 * 359.97438 * 3 2 1 26 26 H 1.08997 * 109.47163 * 269.97094 * 5 4 3 27 27 H 1.08995 * 109.47598 * 29.97966 * 5 4 3 28 28 H 1.09005 * 109.46895 * 149.98318 * 5 4 3 29 29 H 1.07996 * 120.06808 * 179.97438 * 6 4 3 30 30 H 1.08002 * 125.46236 * 359.97438 * 9 8 7 31 31 H 0.96995 * 119.99631 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.07127 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1989 0.0000 4 6 3.5809 1.2070 0.0005 5 6 4.3252 2.5174 0.0011 6 6 4.2805 0.0178 0.0016 7 6 3.5902 -1.1941 0.0016 8 6 4.3357 -2.4750 0.0033 9 6 3.7057 -3.6941 0.0039 10 16 4.8848 -4.9327 -0.0017 11 6 6.1727 -3.7333 0.0036 12 6 7.5422 -4.0182 0.0017 13 1 8.2613 -3.2124 0.0049 14 6 7.9812 -5.3494 -0.0043 15 7 7.1107 -6.3248 -0.0086 16 14 9.8101 -5.7297 -0.0061 17 1 10.2948 -5.8367 1.3934 18 1 10.0479 -7.0144 -0.7119 19 1 10.5415 -4.6402 -0.7013 20 7 5.6471 -2.5271 0.0094 21 6 2.1955 -1.1957 -0.0062 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6541 2.1324 -0.0004 26 1 4.5055 2.8333 -1.0264 27 1 3.7306 3.2729 0.5145 28 1 5.2783 2.3936 0.5156 29 1 5.3604 0.0253 0.0016 30 1 2.6365 -3.8469 0.0036 31 1 7.4146 -7.2459 -0.0124 32 1 1.6555 -2.1311 -0.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000116929799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:26 Heat of formation + Delta-G solvation = 22.872769 kcal Electronic energy + Delta-G solvation = -15898.841333 eV Core-core repulsion = 13335.128276 eV Total energy + Delta-G solvation = -2563.713057 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.14117 -37.22217 -34.19473 -33.19201 -31.80858 -28.79260 -27.03768 -26.79881 -25.66820 -23.34634 -21.14197 -20.10366 -18.06872 -17.74029 -15.99362 -15.62189 -15.20098 -14.66681 -13.96029 -13.79095 -13.52441 -13.01695 -12.78140 -12.74824 -12.59259 -12.32064 -12.11859 -11.82647 -11.61391 -11.52707 -11.08634 -10.80805 -10.71140 -10.52151 -10.34580 -9.73433 -9.49156 -8.50845 -8.09791 -7.88987 -7.81395 -7.11018 -6.89819 -4.76820 1.61357 1.87170 2.56480 2.91750 2.97676 3.04704 3.47044 3.66633 3.90637 3.97995 4.51310 5.09061 5.17027 5.22231 5.30722 5.53533 5.57977 5.73938 5.78426 5.83955 5.93056 6.02170 6.07038 6.12890 6.46853 6.56491 6.67781 6.79508 6.89559 6.99416 7.05879 7.38617 7.49437 7.58085 7.87229 8.29006 8.37392 9.68985 9.79098 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.005124 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.808051 B = 5462.707348 C = 6302.056929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.137 4.137 4 C -0.093 4.093 5 C -0.109 4.109 6 C -0.100 4.100 7 C 0.017 3.983 8 C 0.132 3.868 9 C -0.447 4.447 10 S 0.121 5.879 11 C 0.204 3.796 12 C -0.375 4.375 13 H 0.103 0.897 14 C 0.055 3.945 15 N -0.782 5.782 16 Si 0.942 3.058 17 H -0.264 1.264 18 H -0.272 1.272 19 H -0.257 1.257 20 N -0.589 5.589 21 C -0.118 4.118 22 H 0.065 0.935 23 H 0.063 0.937 24 H 0.061 0.939 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.065 0.935 29 H 0.130 0.870 30 H 0.132 0.868 31 H 0.299 0.701 32 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.856 6.618 -0.049 8.209 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.156 4.156 4 C -0.093 4.093 5 C -0.165 4.165 6 C -0.119 4.119 7 C 0.014 3.986 8 C -0.008 4.008 9 C -0.592 4.592 10 S 0.382 5.618 11 C -0.050 4.050 12 C -0.418 4.418 13 H 0.121 0.879 14 C -0.167 4.167 15 N -0.411 5.411 16 Si 0.765 3.235 17 H -0.189 1.189 18 H -0.197 1.197 19 H -0.180 1.180 20 N -0.311 5.311 21 C -0.138 4.138 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.080 0.920 25 H 0.130 0.870 26 H 0.084 0.916 27 H 0.079 0.921 28 H 0.084 0.916 29 H 0.148 0.852 30 H 0.150 0.850 31 H 0.112 0.888 32 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -4.574 5.638 -0.051 7.260 hybrid contribution 0.041 0.458 -0.007 0.459 sum -4.533 6.095 -0.057 7.596 Atomic orbital electron populations 1.20718 0.91724 1.02205 1.01812 1.19677 0.95490 0.93037 1.01031 1.20750 0.93449 0.96901 1.04461 1.19800 0.93665 0.95126 1.00710 1.20728 0.99912 0.94024 1.01865 1.21213 1.00558 0.90611 0.99558 1.18509 0.91951 0.91774 0.96363 1.18721 0.89444 0.90853 1.01734 1.26433 1.04132 0.99359 1.29262 1.84197 0.95645 1.09947 1.72058 1.23840 0.97288 0.88082 0.95797 1.18977 0.90047 0.93110 1.39633 0.87875 1.26172 1.02415 0.95364 0.92743 1.68771 1.36719 1.01891 1.33725 0.85704 0.79245 0.78894 0.79623 1.18913 1.19721 1.18035 1.67246 1.08644 1.23063 1.32110 1.21028 0.93351 0.97283 1.02100 0.91660 0.91847 0.92026 0.86955 0.91627 0.92119 0.91623 0.85189 0.84999 0.88839 0.86298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.09 -1.48 5.87 -104.68 -0.61 -2.10 16 3 C -0.14 -2.12 9.35 -39.50 -0.37 -2.49 16 4 C -0.09 -1.55 5.87 -104.67 -0.61 -2.16 16 5 C -0.11 -1.40 10.01 36.01 0.36 -1.04 16 6 C -0.10 -2.02 9.28 -39.22 -0.36 -2.39 16 7 C 0.02 0.37 5.88 -104.88 -0.62 -0.25 16 8 C 0.13 3.36 6.65 -84.39 -0.56 2.80 16 9 C -0.45 -11.10 10.41 30.36 0.32 -10.79 16 10 S 0.12 3.09 20.12 -107.50 -2.16 0.93 16 11 C 0.20 5.61 7.11 -17.05 -0.12 5.48 16 12 C -0.37 -9.70 9.44 -38.24 -0.36 -10.06 16 13 H 0.10 2.57 7.85 -52.49 -0.41 2.16 16 14 C 0.06 1.29 5.50 -17.29 -0.10 1.19 16 15 N -0.78 -18.65 10.64 55.56 0.59 -18.06 16 16 Si 0.94 17.35 29.56 -169.99 -5.03 12.32 16 17 H -0.26 -4.79 7.11 56.52 0.40 -4.39 16 18 H -0.27 -4.84 7.11 56.52 0.40 -4.44 16 19 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 20 N -0.59 -16.17 10.01 -9.50 -0.10 -16.26 16 21 C -0.12 -2.24 9.13 -39.22 -0.36 -2.60 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.73 8.09 -51.93 -0.42 0.31 16 24 H 0.06 0.64 8.08 -51.93 -0.42 0.22 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.99 16 26 H 0.07 0.78 8.14 -51.93 -0.42 0.35 16 27 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.06 0.83 8.08 -51.93 -0.42 0.41 16 29 H 0.13 2.75 7.68 -52.49 -0.40 2.34 16 30 H 0.13 2.96 6.84 -52.49 -0.36 2.60 16 31 H 0.30 6.35 8.29 -40.82 -0.34 6.01 16 32 H 0.12 2.16 6.61 -52.49 -0.35 1.81 16 LS Contribution 290.12 15.07 4.37 4.37 Total: -1.00 -28.47 290.12 -8.96 -37.43 By element: Atomic # 1 Polarization: 8.23 SS G_CDS: -3.60 Total: 4.62 kcal Atomic # 6 Polarization: -22.31 SS G_CDS: -3.04 Total: -25.35 kcal Atomic # 7 Polarization: -34.82 SS G_CDS: 0.50 Total: -34.32 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 16 Polarization: 3.09 SS G_CDS: -2.16 Total: 0.93 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.47 -8.96 -37.43 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116929799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.300 kcal (2) G-P(sol) polarization free energy of solvation -28.465 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.962 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.428 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds