Wall clock time and date at job start Mon Mar 30 2020 07:08:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38349 * 119.93313 * 2 1 4 4 C 1.38359 * 120.26720 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.93196 * 180.02562 * 4 3 2 6 6 C 1.37974 * 120.13175 * 359.97438 * 4 3 2 7 7 C 1.39466 * 119.86728 * 0.02562 * 6 4 3 8 8 C 1.48206 * 120.13441 * 180.02562 * 7 6 4 9 9 C 1.37223 * 122.47321 * 179.97438 * 8 7 6 10 10 S 1.71010 * 109.08177 * 179.72887 * 9 8 7 11 11 C 1.75991 * 90.62879 * 0.26541 * 10 9 8 12 12 C 1.39874 * 125.28805 * 180.02562 * 11 10 9 13 13 H 1.08002 * 119.99495 * 179.97438 * 12 11 10 14 14 C 1.40174 * 120.00441 * 359.97280 * 12 11 10 15 15 N 1.30732 * 120.00004 * 0.02562 * 14 12 11 16 16 Si 1.86806 * 120.00102 * 180.02562 * 14 12 11 17 17 H 1.48493 * 109.47195 * 89.99601 * 16 14 12 18 18 H 1.48495 * 109.47110 * 210.00161 * 16 14 12 19 19 H 1.48505 * 109.46687 * 329.99930 * 16 14 12 20 20 N 1.31245 * 122.47547 * 0.23473 * 8 7 6 21 21 C 1.37980 * 119.93159 * 180.29612 * 2 1 3 22 22 H 1.08993 * 109.47015 * 90.00445 * 1 2 3 23 23 H 1.09006 * 109.47022 * 210.00382 * 1 2 3 24 24 H 1.08999 * 109.47155 * 329.99900 * 1 2 3 25 25 H 1.08002 * 119.86887 * 359.97438 * 3 2 1 26 26 H 1.08997 * 109.47163 * 269.97094 * 5 4 3 27 27 H 1.08995 * 109.47598 * 29.97966 * 5 4 3 28 28 H 1.09005 * 109.46895 * 149.98318 * 5 4 3 29 29 H 1.07996 * 120.06808 * 179.97438 * 6 4 3 30 30 H 1.08002 * 125.46236 * 359.97438 * 9 8 7 31 31 H 0.96995 * 119.99631 * 180.02562 * 15 14 12 32 32 H 1.08002 * 120.07127 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1989 0.0000 4 6 3.5809 1.2070 0.0005 5 6 4.3252 2.5174 0.0011 6 6 4.2805 0.0178 0.0016 7 6 3.5902 -1.1941 0.0016 8 6 4.3357 -2.4750 0.0033 9 6 3.7057 -3.6941 0.0039 10 16 4.8848 -4.9327 -0.0017 11 6 6.1727 -3.7333 0.0036 12 6 7.5422 -4.0182 0.0017 13 1 8.2613 -3.2124 0.0049 14 6 7.9812 -5.3494 -0.0043 15 7 7.1107 -6.3248 -0.0086 16 14 9.8101 -5.7297 -0.0061 17 1 10.2948 -5.8367 1.3934 18 1 10.0479 -7.0144 -0.7119 19 1 10.5415 -4.6402 -0.7013 20 7 5.6471 -2.5271 0.0094 21 6 2.1955 -1.1957 -0.0062 22 1 -0.3633 -0.0001 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6541 2.1324 -0.0004 26 1 4.5055 2.8333 -1.0264 27 1 3.7306 3.2729 0.5145 28 1 5.2783 2.3936 0.5156 29 1 5.3604 0.0253 0.0016 30 1 2.6365 -3.8469 0.0036 31 1 7.4146 -7.2459 -0.0124 32 1 1.6555 -2.1311 -0.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000116929799.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:26 Heat of formation + Delta-G solvation = 7.771808 kcal Electronic energy + Delta-G solvation = -15899.496160 eV Core-core repulsion = 13335.128276 eV Total energy + Delta-G solvation = -2564.367884 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.62412 -39.02779 -36.06132 -34.40770 -33.34125 -30.57728 -28.59467 -28.07060 -27.15803 -25.07924 -22.81891 -21.41584 -19.81933 -19.69942 -17.68306 -17.20800 -16.88885 -16.08916 -15.54469 -15.10279 -15.02431 -14.54322 -14.29917 -14.10214 -13.96613 -13.74478 -13.54982 -13.27917 -13.05882 -12.74596 -12.44825 -12.41722 -12.22464 -12.02471 -11.83486 -11.41248 -11.35502 -10.12285 -9.84197 -9.83025 -9.44563 -8.92675 -8.74224 -6.75184 0.04984 0.49019 0.79551 1.38617 1.48061 1.52168 1.57646 1.96982 2.17384 2.24793 2.87505 3.31595 3.76158 3.95739 3.96412 4.26908 4.46538 4.50225 4.62290 4.72494 4.77451 4.83718 4.88415 4.93022 4.93719 5.06779 5.12508 5.27170 5.41246 5.50003 5.67279 5.73696 5.80369 5.93399 6.17839 6.36712 6.41437 7.73072 7.99365 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.032558 B = 0.005124 C = 0.004442 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 859.808051 B = 5462.707348 C = 6302.056929 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.087 4.087 3 C -0.126 4.126 4 C -0.090 4.090 5 C -0.107 4.107 6 C -0.124 4.124 7 C -0.025 4.025 8 C 0.122 3.878 9 C -0.468 4.468 10 S 0.107 5.893 11 C 0.169 3.831 12 C -0.399 4.399 13 H 0.102 0.898 14 C 0.020 3.980 15 N -0.799 5.799 16 Si 1.021 2.979 17 H -0.255 1.255 18 H -0.256 1.256 19 H -0.255 1.255 20 N -0.621 5.621 21 C -0.129 4.129 22 H 0.080 0.920 23 H 0.066 0.934 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.060 0.940 29 H 0.105 0.895 30 H 0.148 0.852 31 H 0.313 0.687 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.438 8.072 -0.064 9.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.087 4.087 3 C -0.144 4.144 4 C -0.090 4.090 5 C -0.163 4.163 6 C -0.143 4.143 7 C -0.028 4.028 8 C -0.016 4.016 9 C -0.612 4.612 10 S 0.366 5.634 11 C -0.083 4.083 12 C -0.442 4.442 13 H 0.120 0.880 14 C -0.200 4.200 15 N -0.427 5.427 16 Si 0.838 3.162 17 H -0.180 1.180 18 H -0.179 1.179 19 H -0.179 1.179 20 N -0.343 5.343 21 C -0.149 4.149 22 H 0.099 0.901 23 H 0.085 0.915 24 H 0.106 0.894 25 H 0.174 0.826 26 H 0.098 0.902 27 H 0.109 0.891 28 H 0.079 0.921 29 H 0.123 0.877 30 H 0.166 0.834 31 H 0.127 0.873 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -5.202 7.093 -0.066 8.797 hybrid contribution 0.170 0.076 -0.003 0.187 sum -5.032 7.169 -0.069 8.759 Atomic orbital electron populations 1.20804 0.88404 1.03766 1.03248 1.20167 0.97816 0.92009 0.98676 1.21271 0.92943 0.98408 1.01789 1.20203 0.94692 0.95227 0.98882 1.20802 0.99797 0.92596 1.03127 1.21162 0.99638 0.91821 1.01681 1.18640 0.93330 0.90894 0.99891 1.19325 0.89225 0.92836 1.00254 1.26551 1.04716 0.98987 1.30899 1.83883 0.95752 1.10268 1.73458 1.24350 0.98536 0.88758 0.96656 1.19367 0.89640 0.94748 1.40443 0.87984 1.27238 1.07555 0.94006 0.91179 1.68792 1.39089 1.02877 1.31954 0.84592 0.72343 0.79157 0.80098 1.17963 1.17945 1.17870 1.67306 1.09884 1.23372 1.33761 1.21144 0.92150 0.98857 1.02741 0.90111 0.91498 0.89359 0.82634 0.90243 0.89102 0.92102 0.87663 0.83387 0.87339 0.86372 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.15 10.01 71.24 0.71 -1.44 16 2 C -0.09 -2.57 5.87 -19.90 -0.12 -2.69 16 3 C -0.13 -3.46 9.35 22.32 0.21 -3.25 16 4 C -0.09 -2.86 5.87 -19.90 -0.12 -2.98 16 5 C -0.11 -2.49 10.01 71.24 0.71 -1.78 16 6 C -0.12 -5.18 9.28 22.50 0.21 -4.97 16 7 C -0.03 -1.15 5.88 -20.03 -0.12 -1.27 16 8 C 0.12 6.60 6.65 41.64 0.28 6.88 16 9 C -0.47 -24.46 10.41 67.58 0.70 -23.75 16 10 S 0.11 5.72 20.12 -56.49 -1.14 4.59 16 11 C 0.17 9.81 7.11 85.13 0.61 10.42 16 12 C -0.40 -21.44 9.44 23.14 0.22 -21.22 16 13 H 0.10 5.31 7.85 -2.91 -0.02 5.29 16 14 C 0.02 0.96 5.50 85.33 0.47 1.42 16 15 N -0.80 -38.37 10.64 21.87 0.23 -38.14 16 16 Si 1.02 34.74 29.56 68.60 2.03 36.76 16 17 H -0.26 -8.34 7.11 99.48 0.71 -7.63 16 18 H -0.26 -7.99 7.11 99.48 0.71 -7.29 16 19 H -0.26 -8.58 7.11 99.48 0.71 -7.87 16 20 N -0.62 -36.24 10.01 -183.96 -1.84 -38.08 16 21 C -0.13 -4.94 9.13 22.51 0.21 -4.74 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.07 1.34 8.09 -2.38 -0.02 1.32 16 24 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 25 H 0.16 2.98 8.06 -2.91 -0.02 2.95 16 26 H 0.08 1.66 8.14 -2.39 -0.02 1.65 16 27 H 0.09 1.59 8.08 -2.39 -0.02 1.57 16 28 H 0.06 1.48 8.08 -2.38 -0.02 1.46 16 29 H 0.11 4.79 7.68 -2.91 -0.02 4.77 16 30 H 0.15 6.96 6.84 -2.91 -0.02 6.94 16 31 H 0.31 13.11 8.29 -92.71 -0.77 12.34 16 32 H 0.12 4.38 6.61 -2.91 -0.02 4.36 16 Total: -1.00 -65.98 290.12 4.38 -61.60 By element: Atomic # 1 Polarization: 21.51 SS G_CDS: 1.13 Total: 22.64 kcal Atomic # 6 Polarization: -53.34 SS G_CDS: 3.97 Total: -49.37 kcal Atomic # 7 Polarization: -74.61 SS G_CDS: -1.61 Total: -76.22 kcal Atomic # 14 Polarization: 34.74 SS G_CDS: 2.03 Total: 36.76 kcal Atomic # 16 Polarization: 5.72 SS G_CDS: -1.14 Total: 4.59 kcal Total: -65.98 4.38 -61.60 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000116929799.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.367 kcal (2) G-P(sol) polarization free energy of solvation -65.977 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.391 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.381 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.595 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds