Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48494 * 109.47307 * 274.96948 * 3 2 1 5 5 H 1.48503 * 109.47308 * 34.97145 * 3 2 1 6 6 H 1.48501 * 109.47244 * 154.96931 * 3 2 1 7 7 C 1.39935 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00304 * 194.77477 * 7 2 1 9 9 C 1.41364 * 120.00244 * 14.77470 * 7 2 1 10 10 C 1.40894 * 120.60919 * 24.41520 * 9 7 2 11 11 C 1.39140 * 118.10789 * 179.70999 * 10 9 7 12 12 C 1.48410 * 120.39043 * 180.28990 * 11 10 9 13 13 C 1.39331 * 120.12067 * 359.97274 * 12 11 10 14 14 C 1.38025 * 119.87500 * 179.72498 * 13 12 11 15 15 C 1.38317 * 120.12055 * 0.57784 * 14 13 12 16 16 C 1.38321 * 120.24174 * 359.67254 * 15 14 13 17 17 C 1.38015 * 120.12358 * 0.04983 * 16 15 14 18 18 C 1.39713 * 119.21604 * 0.53387 * 11 10 9 19 19 N 1.31904 * 121.17252 * 359.45337 * 18 11 10 20 20 C 1.31661 * 122.09983 * 0.27500 * 19 18 11 21 21 Cl 1.73604 * 119.68707 * 179.97438 * 20 19 18 22 22 H 0.97003 * 119.99636 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.94572 * 0.02562 * 10 9 7 24 24 H 1.08001 * 120.06196 * 359.97438 * 13 12 11 25 25 H 1.08003 * 119.93690 * 180.30087 * 14 13 12 26 26 H 1.08004 * 119.88073 * 179.70211 * 15 14 13 27 27 H 1.08002 * 119.94201 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.06407 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.41576 * 179.72792 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3849 2.1070 -1.3947 5 1 1.4964 2.6201 0.8025 6 1 3.5885 1.4121 0.5924 7 6 2.0080 -1.2119 -0.0005 8 1 3.0612 -1.2275 0.2380 9 6 1.3363 -2.4158 -0.3133 10 6 0.1656 -2.4014 -1.0972 11 6 -0.4499 -3.6171 -1.3785 12 6 -1.6819 -3.6613 -2.2049 13 6 -2.2312 -2.4825 -2.7048 14 6 -3.3739 -2.5301 -3.4776 15 6 -3.9802 -3.7439 -3.7460 16 6 -3.4420 -4.9167 -3.2479 17 6 -2.2966 -4.8814 -2.4788 18 6 0.1025 -4.7951 -0.8696 19 7 1.2002 -4.7742 -0.1384 20 6 1.8254 -3.6527 0.1531 21 17 3.2655 -3.6979 1.1215 22 1 -0.4850 0.8401 0.0004 23 1 -0.2395 -1.4736 -1.4733 24 1 -1.7615 -1.5337 -2.4914 25 1 -3.7978 -1.6174 -3.8697 26 1 -4.8770 -3.7762 -4.3471 27 1 -3.9193 -5.8619 -3.4608 28 1 -1.8774 -5.7976 -2.0901 29 1 -0.3751 -5.7401 -1.0823 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000144050987.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = 31.556375 kcal Electronic energy + Delta-G solvation = -15963.622350 eV Core-core repulsion = 13262.409041 eV Total energy + Delta-G solvation = -2701.213308 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.21477 -37.89803 -35.21801 -34.33803 -32.33646 -30.86426 -30.33028 -28.17362 -25.86234 -23.02644 -22.74336 -21.08187 -20.29650 -17.64934 -16.66004 -15.74577 -15.69731 -15.13653 -14.65254 -13.87240 -13.48579 -13.17706 -13.13583 -12.92179 -12.37702 -12.15914 -11.77297 -11.59195 -11.33909 -10.93601 -10.78975 -10.55416 -10.48266 -10.20294 -9.81937 -9.56752 -9.14872 -8.58043 -8.36169 -8.09083 -7.28453 -7.01126 -4.68869 1.35481 1.78063 2.51683 2.78548 2.94823 2.99594 3.04165 3.32661 3.73853 4.16963 4.50442 5.23255 5.24393 5.30260 5.37891 5.51591 5.80631 5.87753 5.99625 6.25824 6.31201 6.46575 6.55152 6.70822 6.81659 6.84377 6.88493 7.08087 7.34357 7.46083 7.50961 7.69866 8.16619 8.39300 8.46133 9.23121 9.86050 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.007592 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.712158 B = 3687.228264 C = 5158.213412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.785 5.785 2 C 0.073 3.927 3 Si 0.917 3.083 4 H -0.265 1.265 5 H -0.274 1.274 6 H -0.257 1.257 7 C -0.429 4.429 8 H 0.094 0.906 9 C 0.077 3.923 10 C -0.107 4.107 11 C -0.092 4.092 12 C -0.011 4.011 13 C -0.112 4.112 14 C -0.121 4.121 15 C -0.138 4.138 16 C -0.123 4.123 17 C -0.120 4.120 18 C -0.008 4.008 19 N -0.460 5.460 20 C 0.061 3.939 21 Cl -0.082 7.082 22 H 0.287 0.713 23 H 0.143 0.857 24 H 0.129 0.871 25 H 0.117 0.883 26 H 0.114 0.886 27 H 0.116 0.884 28 H 0.123 0.877 29 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.589 -0.829 -4.855 6.732 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.409 5.409 2 C -0.147 4.147 3 Si 0.741 3.259 4 H -0.190 1.190 5 H -0.199 1.199 6 H -0.181 1.181 7 C -0.458 4.458 8 H 0.112 0.888 9 C 0.072 3.928 10 C -0.132 4.132 11 C -0.094 4.094 12 C -0.012 4.012 13 C -0.130 4.130 14 C -0.139 4.139 15 C -0.156 4.156 16 C -0.141 4.141 17 C -0.138 4.138 18 C -0.167 4.167 19 N -0.169 5.169 20 C -0.106 4.106 21 Cl -0.054 7.054 22 H 0.098 0.902 23 H 0.161 0.839 24 H 0.146 0.854 25 H 0.135 0.865 26 H 0.132 0.868 27 H 0.134 0.866 28 H 0.141 0.859 29 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -4.322 -1.439 -4.427 6.352 hybrid contribution 0.020 1.469 -0.148 1.476 sum -4.302 0.030 -4.574 6.280 Atomic orbital electron populations 1.69761 1.07747 1.30070 1.33279 1.26038 0.94889 1.01913 0.91853 0.86120 0.80737 0.79635 0.79445 1.19006 1.19920 1.18057 1.19759 0.97857 0.90003 1.38180 0.88764 1.18062 0.92292 0.91884 0.90603 1.21879 0.96605 0.96501 0.98238 1.19509 0.95020 0.95286 0.99616 1.18921 0.93905 0.92924 0.95405 1.21390 0.95887 0.98546 0.97153 1.21036 0.96201 0.97592 0.99088 1.21047 1.00237 0.92860 1.01476 1.20988 0.96494 0.97910 0.98693 1.21250 0.95908 0.97618 0.99014 1.21612 0.95180 0.96096 1.03801 1.66157 1.07962 1.30540 1.12244 1.21494 0.94083 0.90313 1.04690 1.98236 1.37840 1.98661 1.70654 0.90183 0.83939 0.85353 0.86519 0.86806 0.86554 0.85872 0.85138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.78 -18.41 10.81 55.55 0.60 -17.81 15 2 C 0.07 1.67 5.23 -17.34 -0.09 1.58 15 3 Si 0.92 17.35 29.58 -169.99 -5.03 12.32 15 4 H -0.27 -4.93 7.11 56.52 0.40 -4.53 15 5 H -0.27 -5.09 7.11 56.52 0.40 -4.69 15 6 H -0.26 -4.87 7.11 56.52 0.40 -4.47 15 7 C -0.43 -10.63 8.56 -37.76 -0.32 -10.95 15 8 H 0.09 2.28 7.09 -52.48 -0.37 1.91 15 9 C 0.08 1.97 5.59 -106.67 -0.60 1.37 15 10 C -0.11 -2.58 8.15 -38.24 -0.31 -2.90 15 11 C -0.09 -2.05 5.88 -104.82 -0.62 -2.67 15 12 C -0.01 -0.21 5.88 -104.89 -0.62 -0.82 15 13 C -0.11 -1.99 9.43 -39.25 -0.37 -2.36 15 14 C -0.12 -1.81 10.03 -39.63 -0.40 -2.21 15 15 C -0.14 -1.89 10.04 -39.52 -0.40 -2.29 15 16 C -0.12 -1.73 10.03 -39.63 -0.40 -2.13 15 17 C -0.12 -1.98 9.44 -39.26 -0.37 -2.35 15 18 C -0.01 -0.17 10.60 -16.97 -0.18 -0.35 15 19 N -0.46 -11.30 10.30 -9.40 -0.10 -11.40 15 20 C 0.06 1.53 7.34 -16.60 -0.12 1.41 15 21 Cl -0.08 -1.83 27.73 -51.86 -1.44 -3.27 15 22 H 0.29 6.07 8.30 -40.82 -0.34 5.73 15 23 H 0.14 3.41 4.39 -52.49 -0.23 3.18 15 24 H 0.13 2.36 6.26 -52.49 -0.33 2.03 15 25 H 0.12 1.45 8.06 -52.48 -0.42 1.02 15 26 H 0.11 1.23 8.06 -52.48 -0.42 0.81 15 27 H 0.12 1.31 8.06 -52.49 -0.42 0.88 15 28 H 0.12 1.86 6.22 -52.49 -0.33 1.54 15 29 H 0.13 2.53 6.20 -52.49 -0.33 2.20 15 LS Contribution 268.60 15.07 4.05 4.05 Total: -1.00 -26.45 268.60 -8.69 -35.14 By element: Atomic # 1 Polarization: 7.61 SS G_CDS: -1.99 Total: 5.62 kcal Atomic # 6 Polarization: -19.86 SS G_CDS: -4.79 Total: -24.65 kcal Atomic # 7 Polarization: -29.71 SS G_CDS: 0.50 Total: -29.21 kcal Atomic # 14 Polarization: 17.35 SS G_CDS: -5.03 Total: 12.32 kcal Atomic # 17 Polarization: -1.83 SS G_CDS: -1.44 Total: -3.27 kcal Total LS contribution 4.05 Total: 4.05 kcal Total: -26.45 -8.69 -35.14 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144050987.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.699 kcal (2) G-P(sol) polarization free energy of solvation -26.452 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.691 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.143 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.556 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds