Wall clock time and date at job start Mon Mar 30 2020 06:28:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30835 * 1 3 3 Si 1.86797 * 120.00205 * 2 1 4 4 H 1.48494 * 109.47307 * 274.96948 * 3 2 1 5 5 H 1.48503 * 109.47308 * 34.97145 * 3 2 1 6 6 H 1.48501 * 109.47244 * 154.96931 * 3 2 1 7 7 C 1.39935 * 119.99895 * 180.02562 * 2 1 3 8 8 H 1.08003 * 120.00304 * 194.77477 * 7 2 1 9 9 C 1.41364 * 120.00244 * 14.77470 * 7 2 1 10 10 C 1.40894 * 120.60919 * 24.41520 * 9 7 2 11 11 C 1.39140 * 118.10789 * 179.70999 * 10 9 7 12 12 C 1.48410 * 120.39043 * 180.28990 * 11 10 9 13 13 C 1.39331 * 120.12067 * 359.97274 * 12 11 10 14 14 C 1.38025 * 119.87500 * 179.72498 * 13 12 11 15 15 C 1.38317 * 120.12055 * 0.57784 * 14 13 12 16 16 C 1.38321 * 120.24174 * 359.67254 * 15 14 13 17 17 C 1.38015 * 120.12358 * 0.04983 * 16 15 14 18 18 C 1.39713 * 119.21604 * 0.53387 * 11 10 9 19 19 N 1.31904 * 121.17252 * 359.45337 * 18 11 10 20 20 C 1.31661 * 122.09983 * 0.27500 * 19 18 11 21 21 Cl 1.73604 * 119.68707 * 179.97438 * 20 19 18 22 22 H 0.97003 * 119.99636 * 359.97438 * 1 2 3 23 23 H 1.07997 * 120.94572 * 0.02562 * 10 9 7 24 24 H 1.08001 * 120.06196 * 359.97438 * 13 12 11 25 25 H 1.08003 * 119.93690 * 180.30087 * 14 13 12 26 26 H 1.08004 * 119.88073 * 179.70211 * 15 14 13 27 27 H 1.08002 * 119.94201 * 180.02562 * 16 15 14 28 28 H 1.07997 * 120.06407 * 179.97438 * 17 16 15 29 29 H 1.07999 * 119.41576 * 179.72792 * 18 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3083 0.0000 0.0000 3 14 2.2424 1.6177 0.0000 4 1 2.3849 2.1070 -1.3947 5 1 1.4964 2.6201 0.8025 6 1 3.5885 1.4121 0.5924 7 6 2.0080 -1.2119 -0.0005 8 1 3.0612 -1.2275 0.2380 9 6 1.3363 -2.4158 -0.3133 10 6 0.1656 -2.4014 -1.0972 11 6 -0.4499 -3.6171 -1.3785 12 6 -1.6819 -3.6613 -2.2049 13 6 -2.2312 -2.4825 -2.7048 14 6 -3.3739 -2.5301 -3.4776 15 6 -3.9802 -3.7439 -3.7460 16 6 -3.4420 -4.9167 -3.2479 17 6 -2.2966 -4.8814 -2.4788 18 6 0.1025 -4.7951 -0.8696 19 7 1.2002 -4.7742 -0.1384 20 6 1.8254 -3.6527 0.1531 21 17 3.2655 -3.6979 1.1215 22 1 -0.4850 0.8401 0.0004 23 1 -0.2395 -1.4736 -1.4733 24 1 -1.7615 -1.5337 -2.4914 25 1 -3.7978 -1.6174 -3.8697 26 1 -4.8770 -3.7762 -4.3471 27 1 -3.9193 -5.8619 -3.4608 28 1 -1.8774 -5.7976 -2.0901 29 1 -0.3751 -5.7401 -1.0823 RHF calculation, no. of doubly occupied orbitals= 43 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000144050987.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:28:22 Heat of formation + Delta-G solvation = 18.857949 kcal Electronic energy + Delta-G solvation = -15964.172995 eV Core-core repulsion = 13262.409041 eV Total energy + Delta-G solvation = -2701.763953 eV No. of doubly occupied orbitals = 43 Molecular weight (most abundant/longest-lived isotopes) = 259.046 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.76119 -39.37951 -37.01404 -36.12223 -33.85008 -32.49710 -31.71986 -29.67762 -27.65742 -24.59388 -24.24451 -22.56560 -21.81213 -19.34742 -18.21572 -17.39526 -17.27208 -16.70280 -16.07117 -15.23105 -14.96211 -14.94484 -14.51860 -14.33439 -13.87707 -13.72141 -13.39870 -13.30089 -12.84815 -12.42804 -12.27753 -12.17590 -11.93620 -11.76580 -11.56026 -11.27660 -10.69743 -10.17567 -9.87130 -9.78525 -8.90763 -8.71031 -6.54961 -0.11023 0.56962 0.81552 1.14204 1.38486 1.48329 1.51608 1.52411 2.15808 2.58920 3.02932 3.57050 3.90289 4.00072 4.15457 4.22179 4.36947 4.59096 4.61367 4.65910 4.81322 4.95426 5.08559 5.14991 5.26308 5.49590 5.56140 5.64680 5.72129 5.81142 5.97883 6.17318 6.33748 6.56967 6.64503 7.39769 8.14863 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.018145 B = 0.007592 C = 0.005427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1542.712158 B = 3687.228264 C = 5158.213412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.808 5.808 2 C 0.039 3.961 3 Si 0.986 3.014 4 H -0.257 1.257 5 H -0.264 1.264 6 H -0.258 1.258 7 C -0.457 4.457 8 H 0.091 0.909 9 C 0.054 3.946 10 C -0.131 4.131 11 C -0.085 4.085 12 C -0.048 4.048 13 C -0.128 4.128 14 C -0.123 4.123 15 C -0.123 4.123 16 C -0.118 4.118 17 C -0.124 4.124 18 C -0.016 4.016 19 N -0.474 5.474 20 C 0.029 3.971 21 Cl -0.070 7.070 22 H 0.297 0.703 23 H 0.138 0.862 24 H 0.109 0.891 25 H 0.142 0.858 26 H 0.154 0.846 27 H 0.154 0.846 28 H 0.133 0.867 29 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.512 -0.862 -6.232 9.055 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.432 5.432 2 C -0.179 4.179 3 Si 0.806 3.194 4 H -0.182 1.182 5 H -0.188 1.188 6 H -0.182 1.182 7 C -0.485 4.485 8 H 0.109 0.891 9 C 0.048 3.952 10 C -0.157 4.157 11 C -0.088 4.088 12 C -0.049 4.049 13 C -0.147 4.147 14 C -0.141 4.141 15 C -0.141 4.141 16 C -0.136 4.136 17 C -0.142 4.142 18 C -0.176 4.176 19 N -0.183 5.183 20 C -0.136 4.136 21 Cl -0.042 7.042 22 H 0.108 0.892 23 H 0.155 0.845 24 H 0.127 0.873 25 H 0.160 0.840 26 H 0.172 0.828 27 H 0.172 0.828 28 H 0.151 0.849 29 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.247 -1.488 -5.800 8.653 hybrid contribution 0.440 1.398 0.192 1.478 sum -5.807 -0.090 -5.609 8.074 Atomic orbital electron populations 1.69794 1.08957 1.31484 1.32945 1.26832 0.95599 1.04628 0.90844 0.85109 0.79193 0.75354 0.79781 1.18171 1.18836 1.18178 1.19939 0.97918 0.90951 1.39726 0.89130 1.18402 0.93099 0.92519 0.91136 1.21936 0.97159 0.97287 0.99313 1.19840 0.95756 0.94446 0.98726 1.18916 0.93867 0.94793 0.97339 1.21388 0.97327 0.97452 0.98495 1.21352 0.95013 0.99633 0.98106 1.21560 1.00658 0.91852 1.00027 1.21428 0.95253 0.99866 0.97052 1.21450 0.96684 0.96759 0.99265 1.22162 0.94758 0.97477 1.03152 1.66205 1.08753 1.30487 1.12864 1.21689 0.95230 0.90579 1.06129 1.98210 1.37052 1.98658 1.70318 0.89220 0.84466 0.87302 0.83981 0.82802 0.82843 0.84940 0.82199 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -38.79 10.81 21.82 0.24 -38.55 15 2 C 0.04 1.81 5.23 85.25 0.45 2.25 15 3 Si 0.99 35.62 29.58 68.60 2.03 37.65 15 4 H -0.26 -8.92 7.11 99.48 0.71 -8.21 15 5 H -0.26 -9.04 7.11 99.48 0.71 -8.33 15 6 H -0.26 -9.30 7.11 99.48 0.71 -8.59 15 7 C -0.46 -23.45 8.56 23.45 0.20 -23.25 15 8 H 0.09 4.55 7.09 -2.91 -0.02 4.53 15 9 C 0.05 2.88 5.59 -21.19 -0.12 2.76 15 10 C -0.13 -6.64 8.15 23.14 0.19 -6.45 15 11 C -0.09 -3.91 5.88 -19.99 -0.12 -4.02 15 12 C -0.05 -1.85 5.88 -20.04 -0.12 -1.96 15 13 C -0.13 -4.56 9.43 22.48 0.21 -4.35 15 14 C -0.12 -3.35 10.03 22.24 0.22 -3.13 15 15 C -0.12 -2.81 10.04 22.31 0.22 -2.59 15 16 C -0.12 -2.84 10.03 22.24 0.22 -2.62 15 17 C -0.12 -3.82 9.44 22.48 0.21 -3.60 15 18 C -0.02 -0.73 10.60 85.04 0.90 0.17 15 19 N -0.47 -23.81 10.30 -183.64 -1.89 -25.70 15 20 C 0.03 1.53 7.34 85.38 0.63 2.16 15 21 Cl -0.07 -3.24 27.73 -2.72 -0.08 -3.32 15 22 H 0.30 12.69 8.30 -92.71 -0.77 11.92 15 23 H 0.14 6.94 4.39 -2.91 -0.01 6.93 15 24 H 0.11 4.19 6.26 -2.91 -0.02 4.17 15 25 H 0.14 3.07 8.06 -2.91 -0.02 3.05 15 26 H 0.15 2.34 8.06 -2.91 -0.02 2.32 15 27 H 0.15 2.57 8.06 -2.91 -0.02 2.55 15 28 H 0.13 3.71 6.22 -2.91 -0.02 3.69 15 29 H 0.16 6.08 6.20 -2.91 -0.02 6.06 15 Total: -1.00 -59.06 268.60 4.60 -54.47 By element: Atomic # 1 Polarization: 18.89 SS G_CDS: 1.19 Total: 20.08 kcal Atomic # 6 Polarization: -47.74 SS G_CDS: 3.10 Total: -44.63 kcal Atomic # 7 Polarization: -62.59 SS G_CDS: -1.66 Total: -64.25 kcal Atomic # 14 Polarization: 35.62 SS G_CDS: 2.03 Total: 37.65 kcal Atomic # 17 Polarization: -3.24 SS G_CDS: -0.08 Total: -3.32 kcal Total: -59.06 4.60 -54.47 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000144050987.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.327 kcal (2) G-P(sol) polarization free energy of solvation -59.064 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.595 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -54.469 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.858 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds