Wall clock time and date at job start Mon Mar 30 2020 07:05:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30884 * 1 3 3 Si 1.86797 * 119.99736 * 2 1 4 4 H 1.48502 * 109.47134 * 269.99658 * 3 2 1 5 5 H 1.48503 * 109.47514 * 29.99884 * 3 2 1 6 6 H 1.48497 * 109.47384 * 149.99939 * 3 2 1 7 7 C 1.39888 * 120.00229 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00115 * 196.10271 * 7 2 1 9 9 C 1.41195 * 119.99886 * 16.10417 * 7 2 1 10 10 C 1.40841 * 120.17825 * 28.45689 * 9 7 2 11 11 C 1.36424 * 119.81621 * 180.21032 * 10 9 7 12 12 C 1.39346 * 120.17952 * 359.52141 * 11 10 9 13 13 O 1.35644 * 119.82149 * 180.23209 * 12 11 10 14 14 C 1.35711 * 118.00290 * 76.92624 * 13 12 11 15 15 C 1.39397 * 120.83843 * 183.35488 * 14 13 12 16 16 C 1.37885 * 119.14904 * 180.02562 * 15 14 13 17 17 N 1.32025 * 120.85571 * 359.97438 * 16 15 14 18 18 C 1.32125 * 121.84153 * 0.02562 * 17 16 15 19 19 F 1.35097 * 119.62368 * 179.97438 * 18 17 16 20 20 C 1.38330 * 120.75723 * 359.71307 * 18 17 16 21 21 C 1.39349 * 120.35878 * 0.26062 * 12 11 10 22 22 C 1.36422 * 120.18420 * 359.97158 * 21 12 11 23 23 H 0.97000 * 119.99954 * 0.02562 * 1 2 3 24 24 H 1.08004 * 120.09425 * 0.02562 * 10 9 7 25 25 H 1.07999 * 119.91220 * 179.79993 * 11 10 9 26 26 H 1.07995 * 120.42593 * 0.02562 * 15 14 13 27 27 H 1.07997 * 119.56753 * 179.97438 * 16 15 14 28 28 H 1.08005 * 120.46340 * 180.30932 * 20 18 17 29 29 H 1.08004 * 119.90273 * 180.02562 * 21 12 11 30 30 H 1.07991 * 120.09142 * 180.02562 * 22 21 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2428 1.6178 0.0000 4 1 2.4903 2.0464 -1.4001 5 1 1.4402 2.6527 0.7000 6 1 3.5403 1.4403 0.7000 7 6 2.0083 -1.2114 0.0005 8 1 3.0565 -1.2296 0.2600 9 6 1.3439 -2.4104 -0.3381 10 6 0.2413 -2.3858 -1.2140 11 6 -0.3978 -3.5481 -1.5328 12 6 0.0436 -4.7586 -1.0023 13 8 -0.5944 -5.9105 -1.3279 14 6 -0.3506 -6.4507 -2.5487 15 6 -1.0259 -7.5945 -2.9718 16 6 -0.7506 -8.1143 -4.2189 17 7 0.1391 -7.5428 -5.0094 18 6 0.8000 -6.4581 -4.6455 19 9 1.7012 -5.9105 -5.4900 20 6 0.5760 -5.8737 -3.4119 21 6 1.1366 -4.7921 -0.1385 22 6 1.7838 -3.6381 0.1939 23 1 -0.4850 0.8400 -0.0004 24 1 -0.0992 -1.4489 -1.6298 25 1 -1.2455 -3.5306 -2.2018 26 1 -1.7553 -8.0674 -2.3310 27 1 -1.2696 -9.0004 -4.5533 28 1 1.1153 -4.9843 -3.1213 29 1 1.4728 -5.7345 0.2681 30 1 2.6309 -3.6659 0.8631 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000156304672.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:05:39 Heat of formation + Delta-G solvation = -34.732056 kcal Electronic energy + Delta-G solvation = -17978.012202 eV Core-core repulsion = 14845.588036 eV Total energy + Delta-G solvation = -3132.424166 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.075 amu Computer time = 0.37 seconds Orbital eigenvalues (eV) -50.13325 -41.86757 -40.09340 -38.52732 -35.47443 -32.79221 -32.04745 -31.63913 -31.06639 -27.26540 -24.88483 -24.39206 -23.18463 -22.59327 -19.98110 -19.39329 -18.77918 -17.70804 -17.37774 -17.16928 -16.94284 -16.42754 -15.98561 -15.83064 -15.18660 -14.77836 -14.60052 -14.37037 -14.12761 -13.78792 -13.59702 -13.37025 -13.09673 -12.85097 -12.43891 -12.37271 -11.73657 -11.47781 -11.13087 -10.88073 -10.24434 -9.96195 -9.68534 -9.33978 -8.78031 -6.48428 -0.14435 0.13558 0.54751 0.96773 1.38008 1.43796 1.51603 2.15679 2.24544 2.52441 2.56544 2.67863 3.47764 3.57191 3.78374 3.93043 4.20946 4.29595 4.38031 4.57741 4.74394 4.86262 4.98118 4.99127 5.04125 5.19657 5.37257 5.49527 5.60791 5.85999 5.91855 6.08567 6.39592 6.60654 6.61733 6.76466 6.91151 8.19748 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.031821 B = 0.004917 C = 0.004595 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 879.722851 B = 5692.891752 C = 6091.524917 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.816 5.816 2 C 0.036 3.964 3 Si 0.986 3.014 4 H -0.262 1.262 5 H -0.267 1.267 6 H -0.255 1.255 7 C -0.483 4.483 8 H 0.087 0.913 9 C 0.092 3.908 10 C -0.175 4.175 11 C -0.099 4.099 12 C -0.083 4.083 13 O -0.238 6.238 14 C 0.176 3.824 15 C -0.210 4.210 16 C 0.172 3.828 17 N -0.557 5.557 18 C 0.322 3.678 19 F -0.121 7.121 20 C -0.280 4.280 21 C -0.076 4.076 22 C -0.227 4.227 23 H 0.293 0.707 24 H 0.106 0.894 25 H 0.105 0.895 26 H 0.180 0.820 27 H 0.221 0.779 28 H 0.134 0.866 29 H 0.124 0.876 30 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.620 -8.517 -4.045 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.440 5.440 2 C -0.181 4.181 3 Si 0.806 3.194 4 H -0.187 1.187 5 H -0.192 1.192 6 H -0.178 1.178 7 C -0.511 4.511 8 H 0.105 0.895 9 C 0.089 3.911 10 C -0.194 4.194 11 C -0.117 4.117 12 C -0.125 4.125 13 O -0.146 6.146 14 C 0.123 3.877 15 C -0.230 4.230 16 C 0.017 3.983 17 N -0.277 5.277 18 C 0.170 3.830 19 F -0.100 7.100 20 C -0.303 4.303 21 C -0.095 4.095 22 C -0.246 4.246 23 H 0.104 0.896 24 H 0.124 0.876 25 H 0.123 0.877 26 H 0.197 0.803 27 H 0.238 0.762 28 H 0.152 0.848 29 H 0.141 0.859 30 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.756 -8.732 -4.671 10.058 hybrid contribution 0.435 1.655 0.662 1.835 sum -1.322 -7.077 -4.009 8.241 Atomic orbital electron populations 1.69866 1.09138 1.31267 1.33734 1.26841 0.95513 1.04781 0.90925 0.85133 0.79159 0.75484 0.79628 1.18694 1.19164 1.17829 1.19960 0.98225 0.91952 1.40948 0.89515 1.18081 0.91303 0.93403 0.88330 1.20864 1.00268 0.96543 1.01746 1.20748 0.98818 0.92492 0.99685 1.18171 1.01829 0.82755 1.09735 1.84459 1.63149 1.37551 1.29484 1.20137 0.90611 0.91952 0.84991 1.21933 1.04867 0.96339 0.99854 1.23102 0.89906 0.97699 0.87552 1.67132 1.11617 1.10457 1.38484 1.17913 0.88625 0.90723 0.85698 1.91577 1.64044 1.83616 1.70810 1.21920 1.06320 1.06094 0.95969 1.20606 0.92892 0.98435 0.97553 1.20850 1.04626 0.92568 1.06576 0.89587 0.87615 0.87679 0.80307 0.76223 0.84833 0.85857 0.86677 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.82 -40.43 11.12 21.82 0.24 -40.19 16 2 C 0.04 1.72 5.14 85.23 0.44 2.16 16 3 Si 0.99 35.77 29.59 68.60 2.03 37.80 16 4 H -0.26 -9.33 7.11 99.48 0.71 -8.62 16 5 H -0.27 -9.24 7.11 99.48 0.71 -8.54 16 6 H -0.25 -8.95 7.11 99.48 0.71 -8.24 16 7 C -0.48 -24.35 9.03 23.40 0.21 -24.14 16 8 H 0.09 4.16 7.89 -2.91 -0.02 4.14 16 9 C 0.09 4.68 5.53 -21.28 -0.12 4.56 16 10 C -0.17 -8.82 8.61 22.48 0.19 -8.63 16 11 C -0.10 -4.52 9.04 22.11 0.20 -4.32 16 12 C -0.08 -3.56 4.43 22.80 0.10 -3.46 16 13 O -0.24 -9.08 9.98 -30.92 -0.31 -9.39 16 14 C 0.18 5.82 6.66 22.77 0.15 5.98 16 15 C -0.21 -5.00 10.08 22.47 0.23 -4.77 16 16 C 0.17 3.68 11.17 84.58 0.94 4.62 16 17 N -0.56 -16.37 10.37 -197.16 -2.04 -18.42 16 18 C 0.32 10.86 8.41 84.67 0.71 11.57 16 19 F -0.12 -4.20 17.29 44.97 0.78 -3.43 16 20 C -0.28 -9.99 9.02 22.51 0.20 -9.79 16 21 C -0.08 -3.26 9.92 22.11 0.22 -3.04 16 22 C -0.23 -10.49 9.74 22.48 0.22 -10.27 16 23 H 0.29 13.09 8.30 -92.71 -0.77 12.32 16 24 H 0.11 5.55 6.39 -2.91 -0.02 5.54 16 25 H 0.11 4.48 8.06 -2.91 -0.02 4.46 16 26 H 0.18 3.08 8.06 -2.91 -0.02 3.06 16 27 H 0.22 2.36 8.06 -2.91 -0.02 2.34 16 28 H 0.13 5.35 6.56 -2.91 -0.02 5.34 16 29 H 0.12 4.57 8.06 -2.91 -0.02 4.54 16 30 H 0.12 4.90 8.06 -2.92 -0.02 4.88 16 Total: -1.00 -57.53 275.87 5.57 -51.96 By element: Atomic # 1 Polarization: 20.03 SS G_CDS: 1.17 Total: 21.21 kcal Atomic # 6 Polarization: -43.23 SS G_CDS: 3.70 Total: -39.52 kcal Atomic # 7 Polarization: -56.81 SS G_CDS: -1.80 Total: -58.61 kcal Atomic # 8 Polarization: -9.08 SS G_CDS: -0.31 Total: -9.39 kcal Atomic # 9 Polarization: -4.20 SS G_CDS: 0.78 Total: -3.43 kcal Atomic # 14 Polarization: 35.77 SS G_CDS: 2.03 Total: 37.80 kcal Total: -57.53 5.57 -51.96 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000156304672.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.224 kcal (2) G-P(sol) polarization free energy of solvation -57.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.304 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.572 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -51.956 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.732 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.37 seconds