Wall clock time and date at job start Mon Mar 30 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31120 * 1 3 3 Br 1.89103 * 120.00040 * 2 1 4 4 C 1.50705 * 120.00346 * 179.97438 * 2 1 3 5 5 N 1.46906 * 109.46852 * 115.00227 * 4 2 1 6 6 C 1.46894 * 110.99880 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47155 * 185.38213 * 6 5 4 8 8 C 1.50708 * 115.54730 * 294.80053 * 7 6 5 9 9 H 1.07994 * 120.00501 * 95.20134 * 8 7 6 10 10 C 1.37881 * 119.99823 * 274.92856 * 8 7 6 11 11 N 1.31521 * 119.99926 * 355.42157 * 10 8 7 12 12 Si 1.86801 * 120.00038 * 175.41588 * 10 8 7 13 13 H 1.48495 * 109.46929 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46745 * 120.00135 * 12 10 8 15 15 H 1.48498 * 109.47103 * 239.99813 * 12 10 8 16 16 C 1.52996 * 117.50305 * 80.46470 * 7 6 5 17 17 C 1.52994 * 117.50444 * 149.12972 * 7 6 5 18 18 H 1.08005 * 120.00039 * 180.02562 * 1 2 3 19 19 H 1.08002 * 120.00502 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46881 * 355.00822 * 4 2 1 21 21 H 1.09001 * 109.47345 * 235.00068 * 4 2 1 22 22 H 1.00901 * 110.99671 * 303.95835 * 5 4 2 23 23 H 1.08995 * 109.47366 * 65.38019 * 6 5 4 24 24 H 1.09006 * 109.46837 * 305.37455 * 6 5 4 25 25 H 0.96995 * 119.99832 * 185.00406 * 11 10 8 26 26 H 1.08999 * 117.50032 * 215.00249 * 16 7 6 27 27 H 1.09002 * 117.49839 * 0.02981 * 16 7 6 28 28 H 1.09004 * 117.49798 * 359.97366 * 17 7 6 29 29 H 1.09005 * 117.50278 * 144.97026 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2567 1.6377 0.0000 4 6 2.0648 -1.3051 0.0006 5 7 2.8166 -1.4369 -1.2546 6 6 3.5648 -2.7006 -1.2899 7 6 4.4372 -2.7419 -2.5461 8 6 3.6908 -2.7740 -3.8550 9 1 3.5031 -1.8562 -4.3923 10 6 3.2525 -3.9759 -4.3692 11 7 3.5630 -5.1021 -3.7650 12 14 2.2175 -4.0046 -5.9241 13 1 2.0100 -2.6155 -6.4062 14 1 2.9181 -4.7918 -6.9704 15 1 0.9025 -4.6295 -5.6319 16 6 5.7656 -1.9838 -2.5089 17 6 5.7556 -3.5139 -2.4656 18 1 -0.5400 -0.9354 0.0004 19 1 -0.5401 0.9353 -0.0004 20 1 1.3599 -2.1316 0.0904 21 1 2.7570 -1.3247 0.8424 22 1 2.2045 -1.3570 -2.0528 23 1 2.8655 -3.5365 -1.3055 24 1 4.1978 -2.7728 -0.4054 25 1 3.3171 -5.9508 -4.1650 26 1 6.0998 -1.5084 -3.4311 27 1 6.0183 -1.4560 -1.5893 28 1 6.0018 -3.9920 -1.5175 29 1 6.0830 -4.0454 -3.3592 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000168292241.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:40 Heat of formation + Delta-G solvation = 40.967187 kcal Electronic energy + Delta-G solvation = -12269.390783 eV Core-core repulsion = 10046.848953 eV Total energy + Delta-G solvation = -2222.541830 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.16 seconds Orbital eigenvalues (eV) -37.17245 -35.64589 -32.65133 -31.85623 -29.59474 -26.62580 -25.25635 -22.92445 -20.87051 -19.48929 -18.79709 -16.03882 -15.71670 -14.64731 -14.26744 -13.98422 -13.88240 -13.58837 -12.52576 -11.79554 -11.64238 -11.38039 -11.00199 -10.96627 -10.95226 -10.81600 -10.41533 -10.05110 -9.87338 -9.33233 -8.94994 -8.81831 -8.38016 -8.03149 -7.55188 -6.00459 -4.07620 1.88570 1.98784 3.26849 3.36051 3.40562 4.40733 4.73142 5.10167 5.27426 5.52741 5.60696 5.72547 5.85329 6.13524 6.17073 6.34867 6.50543 6.58371 6.83267 6.86041 6.96493 7.23864 7.51341 7.63425 7.89479 7.93790 8.20410 8.52579 8.96718 9.58221 11.06645 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.006317 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.646113 B = 4431.338840 C = 4840.448041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.100 4.100 3 Br -0.064 7.064 4 C 0.095 3.905 5 N -0.671 5.671 6 C 0.107 3.893 7 C 0.046 3.954 8 C -0.490 4.490 9 H 0.060 0.940 10 C 0.068 3.932 11 N -0.881 5.881 12 Si 0.886 3.114 13 H -0.272 1.272 14 H -0.285 1.285 15 H -0.285 1.285 16 C -0.199 4.199 17 C -0.155 4.155 18 H 0.118 0.882 19 H 0.109 0.891 20 H 0.040 0.960 21 H 0.078 0.922 22 H 0.349 0.651 23 H 0.031 0.969 24 H 0.040 0.960 25 H 0.258 0.742 26 H 0.072 0.928 27 H 0.064 0.936 28 H 0.058 0.942 29 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.146 9.910 8.898 14.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.179 4.179 3 Br 0.019 6.981 4 C -0.036 4.036 5 N -0.303 5.303 6 C -0.021 4.021 7 C 0.045 3.955 8 C -0.528 4.528 9 H 0.079 0.921 10 C -0.134 4.134 11 N -0.518 5.518 12 Si 0.714 3.286 13 H -0.196 1.196 14 H -0.211 1.211 15 H -0.211 1.211 16 C -0.237 4.237 17 C -0.194 4.194 18 H 0.136 0.864 19 H 0.127 0.873 20 H 0.058 0.942 21 H 0.097 0.903 22 H 0.168 0.832 23 H 0.049 0.951 24 H 0.059 0.941 25 H 0.068 0.932 26 H 0.090 0.910 27 H 0.083 0.917 28 H 0.076 0.924 29 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.333 10.646 9.142 14.686 hybrid contribution -1.480 -1.239 -1.024 2.185 sum -5.812 9.407 8.118 13.718 Atomic orbital electron populations 1.24095 0.94110 1.03280 0.98302 1.24184 0.95690 0.93208 1.04829 1.96665 1.77919 1.26066 1.97436 1.21040 0.95909 0.90562 0.96061 1.60457 1.29847 1.37749 1.02246 1.21459 0.95731 0.87947 0.97008 1.18727 0.85359 0.98058 0.93366 1.20524 1.34944 0.92936 1.04382 0.92142 1.25012 0.95843 0.95781 0.96774 1.70022 1.46431 0.97096 1.38246 0.86634 0.80325 0.78184 0.83488 1.19626 1.21112 1.21141 1.22863 1.06679 0.94350 0.99769 1.22499 1.05018 0.91944 0.99902 0.86447 0.87286 0.94247 0.90334 0.83194 0.95088 0.94132 0.93227 0.90955 0.91702 0.92388 0.90020 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.83 14.00 28.98 0.41 -1.42 15 2 C -0.10 -1.39 5.91 -36.06 -0.21 -1.60 15 3 Br -0.06 -0.91 33.73 -68.01 -2.29 -3.21 15 4 C 0.09 1.49 5.96 -4.97 -0.03 1.46 15 5 N -0.67 -12.94 6.46 -115.06 -0.74 -13.69 15 6 C 0.11 2.35 5.54 -3.83 -0.02 2.33 15 7 C 0.05 1.12 1.65 -155.66 -0.26 0.86 15 8 C -0.49 -13.09 8.33 -34.43 -0.29 -13.37 15 9 H 0.06 1.64 7.82 -52.49 -0.41 1.23 15 10 C 0.07 1.85 5.43 -17.82 -0.10 1.75 15 11 N -0.88 -24.64 12.65 55.43 0.70 -23.94 15 12 Si 0.89 20.83 29.54 -169.99 -5.02 15.81 15 13 H -0.27 -6.33 7.11 56.52 0.40 -5.93 15 14 H -0.28 -6.73 7.11 56.52 0.40 -6.33 15 15 H -0.29 -6.69 7.11 56.52 0.40 -6.28 15 16 C -0.20 -4.53 9.96 -26.70 -0.27 -4.79 15 17 C -0.16 -3.73 9.14 -26.70 -0.24 -3.98 15 18 H 0.12 1.22 7.84 -52.48 -0.41 0.81 15 19 H 0.11 1.11 8.05 -52.49 -0.42 0.69 15 20 H 0.04 0.60 7.79 -51.93 -0.40 0.19 15 21 H 0.08 1.21 8.14 -51.93 -0.42 0.79 15 22 H 0.35 7.11 8.30 -39.29 -0.33 6.79 15 23 H 0.03 0.74 8.14 -51.93 -0.42 0.32 15 24 H 0.04 0.85 8.08 -51.93 -0.42 0.43 15 25 H 0.26 6.93 8.32 -40.82 -0.34 6.59 15 26 H 0.07 1.65 8.14 -51.93 -0.42 1.23 15 27 H 0.06 1.38 8.14 -51.93 -0.42 0.95 15 28 H 0.06 1.31 8.14 -51.93 -0.42 0.89 15 29 H 0.08 2.11 8.14 -51.93 -0.42 1.69 15 LS Contribution 274.68 15.07 4.14 4.14 Total: -1.00 -27.32 274.68 -8.29 -35.62 By element: Atomic # 1 Polarization: 8.11 SS G_CDS: -4.07 Total: 4.04 kcal Atomic # 6 Polarization: -17.77 SS G_CDS: -1.01 Total: -18.78 kcal Atomic # 7 Polarization: -37.58 SS G_CDS: -0.04 Total: -37.62 kcal Atomic # 14 Polarization: 20.83 SS G_CDS: -5.02 Total: 15.81 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -2.29 Total: -3.21 kcal Total LS contribution 4.14 Total: 4.14 kcal Total: -27.32 -8.29 -35.62 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168292241.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.583 kcal (2) G-P(sol) polarization free energy of solvation -27.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.261 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.293 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 40.967 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.16 seconds