Wall clock time and date at job start Mon Mar 30 2020 06:11:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31120 * 1 3 3 Br 1.89103 * 120.00040 * 2 1 4 4 C 1.50705 * 120.00346 * 179.97438 * 2 1 3 5 5 N 1.46906 * 109.46852 * 115.00227 * 4 2 1 6 6 C 1.46894 * 110.99880 * 180.02562 * 5 4 2 7 7 C 1.52999 * 109.47155 * 185.38213 * 6 5 4 8 8 C 1.50708 * 115.54730 * 294.80053 * 7 6 5 9 9 H 1.07994 * 120.00501 * 95.20134 * 8 7 6 10 10 C 1.37881 * 119.99823 * 274.92856 * 8 7 6 11 11 N 1.31521 * 119.99926 * 355.42157 * 10 8 7 12 12 Si 1.86801 * 120.00038 * 175.41588 * 10 8 7 13 13 H 1.48495 * 109.46929 * 0.02562 * 12 10 8 14 14 H 1.48503 * 109.46745 * 120.00135 * 12 10 8 15 15 H 1.48498 * 109.47103 * 239.99813 * 12 10 8 16 16 C 1.52996 * 117.50305 * 80.46470 * 7 6 5 17 17 C 1.52994 * 117.50444 * 149.12972 * 7 6 5 18 18 H 1.08005 * 120.00039 * 180.02562 * 1 2 3 19 19 H 1.08002 * 120.00502 * 0.02562 * 1 2 3 20 20 H 1.08996 * 109.46881 * 355.00822 * 4 2 1 21 21 H 1.09001 * 109.47345 * 235.00068 * 4 2 1 22 22 H 1.00901 * 110.99671 * 303.95835 * 5 4 2 23 23 H 1.08995 * 109.47366 * 65.38019 * 6 5 4 24 24 H 1.09006 * 109.46837 * 305.37455 * 6 5 4 25 25 H 0.96995 * 119.99832 * 185.00406 * 11 10 8 26 26 H 1.08999 * 117.50032 * 215.00249 * 16 7 6 27 27 H 1.09002 * 117.49839 * 0.02981 * 16 7 6 28 28 H 1.09004 * 117.49798 * 359.97366 * 17 7 6 29 29 H 1.09005 * 117.50278 * 144.97026 * 17 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3112 0.0000 0.0000 3 35 2.2567 1.6377 0.0000 4 6 2.0648 -1.3051 0.0006 5 7 2.8166 -1.4369 -1.2546 6 6 3.5648 -2.7006 -1.2899 7 6 4.4372 -2.7419 -2.5461 8 6 3.6908 -2.7740 -3.8550 9 1 3.5031 -1.8562 -4.3923 10 6 3.2525 -3.9759 -4.3692 11 7 3.5630 -5.1021 -3.7650 12 14 2.2175 -4.0046 -5.9241 13 1 2.0100 -2.6155 -6.4062 14 1 2.9181 -4.7918 -6.9704 15 1 0.9025 -4.6295 -5.6319 16 6 5.7656 -1.9838 -2.5089 17 6 5.7556 -3.5139 -2.4656 18 1 -0.5400 -0.9354 0.0004 19 1 -0.5401 0.9353 -0.0004 20 1 1.3599 -2.1316 0.0904 21 1 2.7570 -1.3247 0.8424 22 1 2.2045 -1.3570 -2.0528 23 1 2.8655 -3.5365 -1.3055 24 1 4.1978 -2.7728 -0.4054 25 1 3.3171 -5.9508 -4.1650 26 1 6.0998 -1.5084 -3.4311 27 1 6.0183 -1.4560 -1.5893 28 1 6.0018 -3.9920 -1.5175 29 1 6.0830 -4.0454 -3.3592 RHF calculation, no. of doubly occupied orbitals= 37 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000168292241.mol2 29 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:11:40 Heat of formation + Delta-G solvation = 25.094725 kcal Electronic energy + Delta-G solvation = -12270.079065 eV Core-core repulsion = 10046.848953 eV Total energy + Delta-G solvation = -2223.230112 eV No. of doubly occupied orbitals = 37 Molecular weight (most abundant/longest-lived isotopes) = 259.027 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.86942 -37.05408 -34.10199 -33.79743 -30.66027 -28.21168 -27.15247 -24.43124 -22.75706 -21.10745 -20.16849 -17.91212 -17.09245 -16.61616 -15.81418 -15.47263 -15.22672 -15.08173 -14.32084 -13.39730 -13.16609 -13.06443 -12.85842 -12.77078 -12.28637 -12.16931 -12.06185 -11.94142 -11.22252 -10.93507 -10.79954 -10.36067 -10.03557 -9.85962 -9.12791 -8.05872 -6.18101 0.87541 0.96661 1.40227 1.44422 1.54724 2.44641 3.21197 3.34139 3.74303 3.90568 4.32532 4.45519 4.60634 4.69018 4.70450 4.76830 5.00899 5.02698 5.10970 5.18552 5.30652 5.33514 5.66865 5.73006 5.83534 6.31182 6.50486 6.60688 6.91133 7.50189 9.00791 Molecular weight = 259.03amu Principal moments of inertia in cm(-1) A = 0.028315 B = 0.006317 C = 0.005783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 988.646113 B = 4431.338840 C = 4840.448041 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.129 4.129 3 Br -0.072 7.072 4 C 0.098 3.902 5 N -0.673 5.673 6 C 0.122 3.878 7 C 0.023 3.977 8 C -0.499 4.499 9 H 0.051 0.949 10 C 0.026 3.974 11 N -0.908 5.908 12 Si 0.946 3.054 13 H -0.268 1.268 14 H -0.285 1.285 15 H -0.282 1.282 16 C -0.180 4.180 17 C -0.160 4.160 18 H 0.133 0.867 19 H 0.127 0.873 20 H 0.047 0.953 21 H 0.080 0.920 22 H 0.341 0.659 23 H 0.005 0.995 24 H 0.050 0.950 25 H 0.258 0.742 26 H 0.068 0.932 27 H 0.084 0.916 28 H 0.069 0.931 29 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.202 10.718 9.237 15.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.208 4.208 3 Br 0.012 6.988 4 C -0.032 4.032 5 N -0.303 5.303 6 C -0.007 4.007 7 C 0.023 3.977 8 C -0.537 4.537 9 H 0.069 0.931 10 C -0.174 4.174 11 N -0.547 5.547 12 Si 0.773 3.227 13 H -0.192 1.192 14 H -0.212 1.212 15 H -0.207 1.207 16 C -0.217 4.217 17 C -0.199 4.199 18 H 0.151 0.849 19 H 0.145 0.855 20 H 0.065 0.935 21 H 0.098 0.902 22 H 0.159 0.841 23 H 0.023 0.977 24 H 0.068 0.932 25 H 0.067 0.933 26 H 0.087 0.913 27 H 0.102 0.898 28 H 0.088 0.912 29 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -5.390 11.470 9.491 15.833 hybrid contribution -1.182 -1.463 -1.102 2.180 sum -6.572 10.007 8.389 14.619 Atomic orbital electron populations 1.24404 0.93304 1.04865 0.94216 1.24011 0.96248 0.92138 1.08382 1.96652 1.78359 1.26217 1.97621 1.21033 0.96009 0.92003 0.94155 1.60409 1.30514 1.35871 1.03515 1.21168 0.95166 0.88319 0.96032 1.18921 0.86032 0.99015 0.93758 1.20706 1.35119 0.92587 1.05328 0.93125 1.25638 0.96799 0.95471 0.99522 1.70122 1.47547 0.97442 1.39554 0.85691 0.78802 0.78125 0.80132 1.19217 1.21166 1.20746 1.22824 1.05024 0.93413 1.00454 1.22397 1.05321 0.92787 0.99356 0.84947 0.85493 0.93522 0.90213 0.84072 0.97710 0.93175 0.93313 0.91320 0.89778 0.91201 0.92501 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.58 14.00 67.66 0.95 -1.63 15 2 C -0.13 -3.32 5.91 25.53 0.15 -3.17 15 3 Br -0.07 -1.92 33.73 -20.37 -0.69 -2.61 15 4 C 0.10 2.92 5.96 85.56 0.51 3.43 15 5 N -0.67 -25.25 6.46 -517.93 -3.35 -28.59 15 6 C 0.12 5.30 5.54 86.30 0.48 5.78 15 7 C 0.02 1.14 1.65 -52.93 -0.09 1.05 15 8 C -0.50 -26.69 8.33 25.60 0.21 -26.47 15 9 H 0.05 2.75 7.82 -2.91 -0.02 2.72 15 10 C 0.03 1.38 5.43 84.65 0.46 1.84 15 11 N -0.91 -51.14 12.65 21.45 0.27 -50.87 15 12 Si 0.95 42.73 29.54 68.60 2.03 44.75 15 13 H -0.27 -11.81 7.11 99.48 0.71 -11.10 15 14 H -0.29 -12.85 7.11 99.48 0.71 -12.14 15 15 H -0.28 -12.47 7.11 99.48 0.71 -11.77 15 16 C -0.18 -8.00 9.96 30.62 0.30 -7.69 15 17 C -0.16 -7.69 9.14 30.62 0.28 -7.41 15 18 H 0.13 2.30 7.84 -2.91 -0.02 2.28 15 19 H 0.13 2.13 8.05 -2.91 -0.02 2.11 15 20 H 0.05 1.33 7.79 -2.39 -0.02 1.31 15 21 H 0.08 2.34 8.14 -2.39 -0.02 2.32 15 22 H 0.34 13.67 8.30 -89.69 -0.74 12.92 15 23 H 0.00 0.23 8.14 -2.39 -0.02 0.21 15 24 H 0.05 2.04 8.08 -2.38 -0.02 2.02 15 25 H 0.26 13.92 8.32 -92.71 -0.77 13.14 15 26 H 0.07 3.07 8.14 -2.39 -0.02 3.06 15 27 H 0.08 3.40 8.14 -2.39 -0.02 3.38 15 28 H 0.07 3.13 8.14 -2.39 -0.02 3.11 15 29 H 0.06 2.98 8.14 -2.38 -0.02 2.96 15 Total: -1.00 -56.96 274.68 1.90 -55.05 By element: Atomic # 1 Polarization: 16.15 SS G_CDS: 0.38 Total: 16.53 kcal Atomic # 6 Polarization: -37.53 SS G_CDS: 3.26 Total: -34.27 kcal Atomic # 7 Polarization: -76.38 SS G_CDS: -3.07 Total: -79.46 kcal Atomic # 14 Polarization: 42.73 SS G_CDS: 2.03 Total: 44.75 kcal Atomic # 35 Polarization: -1.92 SS G_CDS: -0.69 Total: -2.61 kcal Total: -56.96 1.90 -55.05 kcal The number of atoms in the molecule is 29 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000168292241.mol2 29 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.147 kcal (2) G-P(sol) polarization free energy of solvation -56.957 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.052 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.095 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds