Wall clock time and date at job start Mon Mar 30 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.46919 * 180.02562 * 14 13 12 16 16 C 1.33342 * 125.18746 * 89.72465 * 15 14 13 17 17 C 1.38472 * 114.92828 * 179.79766 * 16 15 14 18 18 C 1.33497 * 114.88563 * 0.49198 * 17 16 15 19 19 Cl 1.73599 * 125.21103 * 179.76149 * 18 17 16 20 20 S 1.75880 * 109.58124 * 359.73765 * 18 17 16 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 26 26 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 27 27 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 28 28 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 29 29 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 30 30 H 1.08002 * 122.53504 * 359.97438 * 16 15 14 31 31 H 1.08002 * 122.56115 * 180.23505 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6612 0.4064 -4.7512 16 6 3.7159 1.1523 -5.0818 17 6 3.5450 1.9375 -6.2094 18 6 2.3463 1.8361 -6.7882 19 17 1.8433 2.7011 -8.2068 20 16 1.3548 0.6914 -5.8938 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 2.9172 -1.1204 -1.0288 26 1 1.0871 0.6165 -2.5525 27 1 2.7588 1.0464 -2.1181 28 1 3.5917 -0.9260 -3.3683 29 1 1.9201 -1.3564 -3.8032 30 1 4.6350 1.1424 -4.5147 31 1 4.3207 2.5859 -6.5893 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219414504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:02 Heat of formation + Delta-G solvation = 14.957458 kcal Electronic energy + Delta-G solvation = -14363.263962 eV Core-core repulsion = 11796.774822 eV Total energy + Delta-G solvation = -2566.489140 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.28916 -36.88095 -36.06577 -33.36835 -31.48600 -28.67172 -26.47251 -25.19245 -23.67284 -21.71147 -19.82470 -19.48162 -17.47848 -16.48263 -15.85982 -14.96003 -14.66467 -14.13394 -13.84328 -13.54187 -13.24389 -12.89981 -12.68631 -12.22394 -11.98826 -11.51213 -11.38899 -11.09196 -10.94724 -10.81153 -10.75826 -10.67971 -10.23785 -10.13313 -9.96018 -8.87033 -8.64179 -8.54830 -8.48811 -7.33120 -6.04222 -4.11157 0.73000 1.01444 1.75628 2.12203 2.52865 3.29908 3.34585 3.37079 4.37975 4.69241 5.11690 5.23053 5.27080 5.41821 5.44917 5.72499 5.79090 5.91649 6.08818 6.16459 6.39920 6.45084 6.86801 7.12436 7.21155 7.47561 7.75562 7.87353 8.25157 8.34480 8.63216 8.98855 9.54839 11.02074 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.052553 B = 0.003458 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.663045 B = 8095.809959 C = 8230.776282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 C 0.212 3.788 3 H 0.001 0.999 4 C -0.521 4.521 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.890 5.890 8 Si 0.898 3.102 9 H -0.287 1.287 10 H -0.276 1.276 11 H -0.278 1.278 12 N -0.689 5.689 13 C 0.067 3.933 14 C -0.052 4.052 15 C -0.146 4.146 16 C -0.145 4.145 17 C -0.111 4.111 18 C -0.163 4.163 19 Cl -0.024 7.024 20 S 0.151 5.849 21 H 0.081 0.919 22 H 0.004 0.996 23 H 0.031 0.969 24 H 0.262 0.738 25 H 0.331 0.669 26 H 0.065 0.935 27 H 0.023 0.977 28 H 0.083 0.917 29 H 0.083 0.917 30 H 0.147 0.853 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.644 1.665 -18.144 18.581 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.105 3.895 3 H 0.019 0.981 4 C -0.559 4.559 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.528 5.528 8 Si 0.725 3.275 9 H -0.213 1.213 10 H -0.202 1.202 11 H -0.203 1.203 12 N -0.321 5.321 13 C -0.064 4.064 14 C -0.091 4.091 15 C -0.264 4.264 16 C -0.174 4.174 17 C -0.144 4.144 18 C -0.306 4.306 19 Cl 0.004 6.996 20 S 0.414 5.586 21 H 0.099 0.901 22 H 0.023 0.977 23 H 0.051 0.949 24 H 0.072 0.928 25 H 0.148 0.852 26 H 0.084 0.916 27 H 0.041 0.959 28 H 0.102 0.898 29 H 0.102 0.898 30 H 0.165 0.835 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.403 1.090 -18.466 18.552 hybrid contribution 2.437 0.882 1.040 2.793 sum 3.840 1.972 -17.426 17.953 Atomic orbital electron populations 1.21720 0.97860 0.99354 0.99381 1.19100 0.92652 0.92343 0.85448 0.98121 1.21226 1.31658 1.12580 0.90462 0.92219 1.24929 0.95023 0.94985 0.99068 1.69891 1.36502 1.22822 1.23612 0.86571 0.79058 0.79790 0.82035 1.21290 1.20162 1.20322 1.60739 1.32052 1.33153 1.06116 1.21889 0.99975 0.94099 0.90456 1.20295 1.03100 0.95792 0.89955 1.24763 0.96360 1.03885 1.01440 1.19977 1.00526 0.98681 0.98196 1.20162 0.96282 1.01574 0.96378 1.25199 0.99806 1.07092 0.98523 1.98350 1.90727 1.74520 1.35954 1.84507 1.15783 1.38137 1.20222 0.90084 0.97728 0.94934 0.92832 0.85240 0.91642 0.95866 0.89830 0.89821 0.83492 0.83682 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.12 9.19 37.16 0.34 -2.78 16 2 C 0.21 5.35 2.60 -68.87 -0.18 5.17 16 3 H 0.00 0.03 7.80 -51.93 -0.40 -0.37 16 4 C -0.52 -14.18 8.59 -34.44 -0.30 -14.48 16 5 H 0.06 1.59 7.62 -52.49 -0.40 1.19 16 6 C 0.06 1.70 5.30 -17.82 -0.09 1.61 16 7 N -0.89 -25.38 11.32 55.43 0.63 -24.76 16 8 Si 0.90 21.09 29.54 -169.99 -5.02 16.07 16 9 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.02 16 12 N -0.69 -14.32 6.30 -107.95 -0.68 -15.00 16 13 C 0.07 1.16 5.47 -3.82 -0.02 1.13 16 14 C -0.05 -0.70 5.97 -27.88 -0.17 -0.87 16 15 C -0.15 -1.84 5.76 -36.02 -0.21 -2.05 16 16 C -0.14 -1.67 10.05 -41.21 -0.41 -2.08 16 17 C -0.11 -1.22 10.13 -41.15 -0.42 -1.64 16 18 C -0.16 -1.89 7.10 29.07 0.21 -1.68 16 19 Cl -0.02 -0.25 29.29 -51.86 -1.52 -1.77 16 20 S 0.15 1.82 23.33 -107.50 -2.51 -0.69 16 21 H 0.08 2.20 6.07 -51.93 -0.32 1.88 16 22 H 0.00 0.09 7.45 -51.93 -0.39 -0.30 16 23 H 0.03 0.80 8.14 -51.93 -0.42 0.37 16 24 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 25 H 0.33 6.56 8.22 -39.30 -0.32 6.24 16 26 H 0.07 1.20 7.44 -51.93 -0.39 0.81 16 27 H 0.02 0.42 8.05 -51.93 -0.42 0.00 16 28 H 0.08 1.03 8.14 -51.93 -0.42 0.61 16 29 H 0.08 1.13 8.14 -51.92 -0.42 0.70 16 30 H 0.15 1.48 8.06 -52.49 -0.42 1.06 16 31 H 0.15 1.30 8.06 -52.49 -0.42 0.87 16 LS Contribution 292.76 15.07 4.41 4.41 Total: -1.00 -28.08 292.76 -9.82 -37.90 By element: Atomic # 1 Polarization: 5.37 SS G_CDS: -3.88 Total: 1.48 kcal Atomic # 6 Polarization: -16.42 SS G_CDS: -1.25 Total: -17.66 kcal Atomic # 7 Polarization: -39.70 SS G_CDS: -0.05 Total: -39.75 kcal Atomic # 14 Polarization: 21.09 SS G_CDS: -5.02 Total: 16.07 kcal Atomic # 16 Polarization: 1.82 SS G_CDS: -2.51 Total: -0.69 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.08 -9.82 -37.90 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.859 kcal (2) G-P(sol) polarization free energy of solvation -28.083 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.902 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.957 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds