Wall clock time and date at job start Mon Mar 30 2020 06:51:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48506 * 109.46985 * 179.97438 * 8 6 4 10 10 H 1.48494 * 109.47276 * 299.99832 * 8 6 4 11 11 H 1.48498 * 109.47150 * 60.00043 * 8 6 4 12 12 N 1.46903 * 109.47120 * 240.00492 * 2 1 3 13 13 C 1.46906 * 110.99973 * 84.99803 * 12 2 1 14 14 C 1.52994 * 109.46817 * 179.97438 * 13 12 2 15 15 C 1.50705 * 109.46919 * 180.02562 * 14 13 12 16 16 C 1.33342 * 125.18746 * 89.72465 * 15 14 13 17 17 C 1.38472 * 114.92828 * 179.79766 * 16 15 14 18 18 C 1.33497 * 114.88563 * 0.49198 * 17 16 15 19 19 Cl 1.73599 * 125.21103 * 179.76149 * 18 17 16 20 20 S 1.75880 * 109.58124 * 359.73765 * 18 17 16 21 21 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 22 22 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 23 23 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 24 24 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 25 25 H 1.00894 * 111.00044 * 208.95721 * 12 2 1 26 26 H 1.08993 * 109.47070 * 299.99958 * 13 12 2 27 27 H 1.08998 * 109.46583 * 59.99950 * 13 12 2 28 28 H 1.09001 * 109.47363 * 300.00234 * 14 13 12 29 29 H 1.09007 * 109.47271 * 60.00694 * 14 13 12 30 30 H 1.08002 * 122.53504 * 359.97438 * 16 15 14 31 31 H 1.08002 * 122.56115 * 180.23505 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.8269 -0.4203 5.2204 10 1 1.8258 -2.5205 4.0075 11 1 3.8063 -1.1213 4.0080 12 7 2.0197 -0.6924 -1.1995 13 6 2.0824 0.2228 -2.3469 14 6 2.5962 -0.5326 -3.5742 15 6 2.6612 0.4064 -4.7512 16 6 3.7159 1.1523 -5.0818 17 6 3.5450 1.9375 -6.2094 18 6 2.3463 1.8361 -6.7882 19 17 1.8433 2.7011 -8.2068 20 16 1.3548 0.6914 -5.8938 21 1 -0.3634 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 -0.0005 24 1 0.7089 1.1611 3.4845 25 1 2.9172 -1.1204 -1.0288 26 1 1.0871 0.6165 -2.5525 27 1 2.7588 1.0464 -2.1181 28 1 3.5917 -0.9260 -3.3683 29 1 1.9201 -1.3564 -3.8032 30 1 4.6350 1.1424 -4.5147 31 1 4.3207 2.5859 -6.5893 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219414504.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:02 Heat of formation + Delta-G solvation = -0.862779 kcal Electronic energy + Delta-G solvation = -14363.949979 eV Core-core repulsion = 11796.774822 eV Total energy + Delta-G solvation = -2567.175157 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24416 -38.01095 -37.48005 -35.06634 -33.08102 -30.25549 -27.83711 -27.17989 -24.79842 -22.98969 -21.73262 -20.41022 -18.63430 -18.29560 -17.00122 -16.63741 -16.17315 -15.59711 -15.22698 -14.68096 -14.45730 -14.27419 -13.83343 -13.75713 -13.40926 -12.98375 -12.85281 -12.66031 -12.47709 -12.34335 -12.18155 -12.14299 -11.80390 -11.74310 -11.64018 -10.89934 -10.56302 -9.56660 -9.49786 -9.08237 -8.12642 -6.27353 -0.19563 0.11084 0.84447 1.23276 1.44182 1.46162 1.53686 1.63763 2.42557 3.15940 3.48668 3.98955 4.16925 4.31853 4.38419 4.47509 4.68081 4.80534 4.88887 5.03570 5.06856 5.09945 5.17360 5.22888 5.41443 5.48166 5.67260 5.85796 6.22101 6.45797 6.76856 7.01359 7.43325 8.92959 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.052553 B = 0.003458 C = 0.003401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 532.663045 B = 8095.809959 C = 8230.776282 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C 0.215 3.785 3 H -0.031 1.031 4 C -0.540 4.540 5 H 0.063 0.937 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.964 3.036 9 H -0.286 1.286 10 H -0.271 1.271 11 H -0.269 1.269 12 N -0.686 5.686 13 C 0.071 3.929 14 C -0.037 4.037 15 C -0.164 4.164 16 C -0.138 4.138 17 C -0.112 4.112 18 C -0.168 4.168 19 Cl -0.015 7.015 20 S 0.137 5.863 21 H 0.056 0.944 22 H 0.019 0.981 23 H 0.029 0.971 24 H 0.263 0.737 25 H 0.337 0.663 26 H 0.053 0.947 27 H 0.017 0.983 28 H 0.099 0.901 29 H 0.084 0.916 30 H 0.164 0.836 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.780 1.165 -18.753 19.388 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.107 3.893 3 H -0.014 1.014 4 C -0.578 4.578 5 H 0.081 0.919 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.789 3.211 9 H -0.211 1.211 10 H -0.196 1.196 11 H -0.194 1.194 12 N -0.317 5.317 13 C -0.060 4.060 14 C -0.077 4.077 15 C -0.282 4.282 16 C -0.167 4.167 17 C -0.144 4.144 18 C -0.311 4.311 19 Cl 0.013 6.987 20 S 0.400 5.600 21 H 0.075 0.925 22 H 0.038 0.962 23 H 0.048 0.952 24 H 0.072 0.928 25 H 0.155 0.845 26 H 0.071 0.929 27 H 0.035 0.965 28 H 0.118 0.882 29 H 0.103 0.897 30 H 0.181 0.819 31 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges 2.544 0.580 -19.100 19.278 hybrid contribution 2.084 1.100 1.138 2.617 sum 4.629 1.680 -17.963 18.625 Atomic orbital electron populations 1.21555 0.97908 0.98893 0.98926 1.18904 0.92654 0.90795 0.86982 1.01392 1.21589 1.31855 1.12841 0.91519 0.91866 1.25769 0.95145 0.95660 1.02169 1.70028 1.37445 1.24105 1.24255 0.85519 0.78798 0.78624 0.78124 1.21110 1.19575 1.19395 1.60622 1.32490 1.33311 1.05324 1.21876 0.99411 0.93888 0.90795 1.20079 1.03740 0.95432 0.88439 1.24662 0.97038 1.04829 1.01719 1.20251 1.00723 0.97648 0.98100 1.20421 0.96559 1.01496 0.95959 1.25340 0.99935 1.06987 0.98876 1.98355 1.90692 1.74220 1.35389 1.84527 1.16164 1.38717 1.20596 0.92508 0.96184 0.95196 0.92842 0.84549 0.92890 0.96516 0.88244 0.89703 0.81874 0.81483 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.78 9.19 71.98 0.66 -5.12 16 2 C 0.22 10.97 2.60 44.17 0.11 11.08 16 3 H -0.03 -1.78 7.80 -2.39 -0.02 -1.80 16 4 C -0.54 -29.39 8.59 25.60 0.22 -29.17 16 5 H 0.06 3.32 7.62 -2.91 -0.02 3.29 16 6 C 0.01 0.65 5.30 84.66 0.45 1.10 16 7 N -0.92 -53.04 11.32 21.45 0.24 -52.79 16 8 Si 0.96 42.97 29.54 68.60 2.03 45.00 16 9 H -0.29 -12.55 7.11 99.48 0.71 -11.84 16 10 H -0.27 -11.75 7.11 99.48 0.71 -11.05 16 11 H -0.27 -11.53 7.11 99.48 0.71 -10.83 16 12 N -0.69 -28.20 6.30 -495.46 -3.12 -31.33 16 13 C 0.07 2.42 5.47 86.30 0.47 2.89 16 14 C -0.04 -0.95 5.97 29.85 0.18 -0.78 16 15 C -0.16 -3.89 5.76 24.58 0.14 -3.74 16 16 C -0.14 -2.88 10.05 21.22 0.21 -2.66 16 17 C -0.11 -2.20 10.13 21.25 0.22 -1.99 16 18 C -0.17 -3.62 7.10 66.75 0.47 -3.15 16 19 Cl -0.01 -0.29 29.29 -2.72 -0.08 -0.37 16 20 S 0.14 3.18 23.33 -56.49 -1.32 1.86 16 21 H 0.06 3.14 6.07 -2.39 -0.01 3.13 16 22 H 0.02 0.89 7.45 -2.38 -0.02 0.88 16 23 H 0.03 1.47 8.14 -2.39 -0.02 1.45 16 24 H 0.26 14.40 8.31 -92.71 -0.77 13.63 16 25 H 0.34 13.08 8.22 -89.70 -0.74 12.35 16 26 H 0.05 1.93 7.44 -2.39 -0.02 1.92 16 27 H 0.02 0.59 8.05 -2.39 -0.02 0.58 16 28 H 0.10 2.22 8.14 -2.39 -0.02 2.20 16 29 H 0.08 2.16 8.14 -2.38 -0.02 2.14 16 30 H 0.16 2.83 8.06 -2.91 -0.02 2.80 16 31 H 0.17 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -59.15 292.76 1.29 -57.86 By element: Atomic # 1 Polarization: 10.92 SS G_CDS: 0.40 Total: 11.32 kcal Atomic # 6 Polarization: -34.68 SS G_CDS: 3.14 Total: -31.54 kcal Atomic # 7 Polarization: -81.24 SS G_CDS: -2.88 Total: -84.12 kcal Atomic # 14 Polarization: 42.97 SS G_CDS: 2.03 Total: 45.00 kcal Atomic # 16 Polarization: 3.18 SS G_CDS: -1.32 Total: 1.86 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.08 Total: -0.37 kcal Total: -59.15 1.29 -57.86 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414504.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.998 kcal (2) G-P(sol) polarization free energy of solvation -59.146 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.148 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.285 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.861 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds