Wall clock time and date at job start Mon Mar 30 2020 06:51:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47211 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.47002 * 180.02562 * 14 13 12 16 16 C 1.33345 * 125.18651 * 90.00072 * 15 14 13 17 17 C 1.38472 * 114.92848 * 179.97438 * 16 15 14 18 18 C 1.33508 * 114.88505 * 359.97438 * 17 16 15 19 19 Cl 1.73590 * 125.21066 * 179.97438 * 18 17 16 20 20 S 1.75875 * 125.18716 * 269.69539 * 15 14 13 21 21 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 23 23 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 26 26 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 27 27 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 28 28 H 1.08996 * 109.47170 * 300.00478 * 14 13 12 29 29 H 1.08997 * 109.47309 * 60.00114 * 14 13 12 30 30 H 1.08002 * 122.53952 * 359.97438 * 16 15 14 31 31 H 1.08002 * 122.55901 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5963 -0.5330 3.5741 15 6 2.6601 0.4056 4.7515 16 6 1.6693 0.6202 5.6177 17 6 1.9587 1.5281 6.6223 18 6 3.1864 2.0502 6.5711 19 17 3.8284 3.2100 7.6919 20 16 4.0554 1.3792 5.1969 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 1.9111 -0.5221 -4.4375 25 1 2.9174 -1.1205 1.0286 26 1 2.7589 1.0461 2.1182 27 1 1.0871 0.6161 2.5525 28 1 1.9203 -1.3569 3.8029 29 1 3.5917 -0.9264 3.3683 30 1 0.7133 0.1234 5.5415 31 1 1.2458 1.7936 7.3889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000219414585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:05 Heat of formation + Delta-G solvation = 23.306311 kcal Electronic energy + Delta-G solvation = -14429.038858 eV Core-core repulsion = 11862.911751 eV Total energy + Delta-G solvation = -2566.127107 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.36011 -36.96714 -36.29723 -33.39540 -31.72059 -29.35315 -26.75868 -25.13899 -23.75770 -21.80046 -19.96153 -19.53224 -17.54791 -16.77050 -15.93562 -15.52980 -14.46660 -14.35454 -13.86877 -13.63097 -13.25107 -13.16236 -12.72925 -12.52778 -12.25382 -12.09142 -11.61649 -11.32697 -11.19118 -10.88642 -10.88088 -10.70643 -10.51981 -10.11980 -9.51855 -9.07052 -8.71430 -8.65446 -8.60248 -7.58069 -6.12711 -4.12955 0.66132 0.94807 1.68504 2.06111 2.46431 3.25199 3.34835 3.37144 4.36137 4.56331 5.04509 5.16752 5.19894 5.23071 5.35405 5.55859 5.74139 5.83342 5.94621 6.12033 6.25714 6.28812 6.39080 6.51635 6.68885 6.78410 7.35135 7.53739 7.87273 8.28240 8.56999 8.91391 9.49382 11.00209 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.040408 B = 0.003775 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.766683 B = 7416.070654 C = 7499.022460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C 0.182 3.818 3 H 0.001 0.999 4 C -0.522 4.522 5 H 0.079 0.921 6 C 0.072 3.928 7 N -0.898 5.898 8 Si 0.891 3.109 9 H -0.278 1.278 10 H -0.269 1.269 11 H -0.297 1.297 12 N -0.679 5.679 13 C 0.063 3.937 14 C -0.051 4.051 15 C -0.148 4.148 16 C -0.142 4.142 17 C -0.112 4.112 18 C -0.161 4.161 19 Cl -0.023 7.023 20 S 0.147 5.853 21 H 0.058 0.942 22 H 0.025 0.975 23 H 0.037 0.963 24 H 0.265 0.735 25 H 0.340 0.660 26 H 0.023 0.977 27 H 0.068 0.932 28 H 0.095 0.905 29 H 0.075 0.925 30 H 0.149 0.851 31 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.365 5.468 20.983 21.727 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C 0.073 3.927 3 H 0.019 0.981 4 C -0.560 4.560 5 H 0.097 0.903 6 C -0.131 4.131 7 N -0.536 5.536 8 Si 0.721 3.279 9 H -0.205 1.205 10 H -0.194 1.194 11 H -0.225 1.225 12 N -0.310 5.310 13 C -0.067 4.067 14 C -0.091 4.091 15 C -0.266 4.266 16 C -0.171 4.171 17 C -0.144 4.144 18 C -0.305 4.305 19 Cl 0.005 6.995 20 S 0.409 5.591 21 H 0.077 0.923 22 H 0.044 0.956 23 H 0.055 0.945 24 H 0.075 0.925 25 H 0.158 0.842 26 H 0.041 0.959 27 H 0.086 0.914 28 H 0.113 0.887 29 H 0.094 0.906 30 H 0.167 0.833 31 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges 2.268 5.535 20.468 21.324 hybrid contribution -1.238 1.360 0.282 1.861 sum 1.029 6.895 20.749 21.889 Atomic orbital electron populations 1.22068 0.98664 1.01041 0.97731 1.19529 0.91805 0.92987 0.88344 0.98140 1.21100 1.32414 1.13855 0.88598 0.90301 1.24930 0.95680 0.96708 0.95744 1.69889 1.45426 1.40305 0.97950 0.86803 0.80702 0.83545 0.76810 1.20451 1.19395 1.22485 1.60519 1.32933 1.32486 1.05107 1.21948 1.00181 0.94097 0.90522 1.20268 1.02937 0.95899 0.89989 1.24749 0.96417 1.03414 1.02063 1.19992 1.00806 1.01076 0.95217 1.20182 0.95297 0.98085 1.00869 1.25198 0.99495 1.04650 1.01110 1.98354 1.85874 1.56323 1.58901 1.84522 1.15491 1.38491 1.20579 0.92288 0.95572 0.94492 0.92533 0.84232 0.95874 0.91351 0.88669 0.90612 0.83319 0.83619 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.04 8.89 37.16 0.33 -2.71 16 2 C 0.18 4.27 2.19 -68.86 -0.15 4.12 16 3 H 0.00 0.03 6.86 -51.93 -0.36 -0.33 16 4 C -0.52 -14.44 9.17 -34.44 -0.32 -14.76 16 5 H 0.08 2.34 7.86 -52.49 -0.41 1.93 16 6 C 0.07 2.05 5.45 -17.82 -0.10 1.96 16 7 N -0.90 -27.19 13.96 55.43 0.77 -26.42 16 8 Si 0.89 21.98 24.37 -169.99 -4.14 17.84 16 9 H -0.28 -6.68 6.88 56.52 0.39 -6.29 16 10 H -0.27 -6.41 6.52 56.52 0.37 -6.04 16 11 H -0.30 -7.32 7.11 56.52 0.40 -6.92 16 12 N -0.68 -13.30 6.30 -107.95 -0.68 -13.98 16 13 C 0.06 1.01 5.47 -3.83 -0.02 0.99 16 14 C -0.05 -0.64 5.97 -27.88 -0.17 -0.81 16 15 C -0.15 -1.74 5.76 -36.02 -0.21 -1.95 16 16 C -0.14 -1.52 10.05 -41.20 -0.41 -1.94 16 17 C -0.11 -1.15 10.13 -41.15 -0.42 -1.57 16 18 C -0.16 -1.78 7.10 29.08 0.21 -1.57 16 19 Cl -0.02 -0.23 29.29 -51.86 -1.52 -1.75 16 20 S 0.15 1.68 23.33 -107.50 -2.51 -0.83 16 21 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 22 H 0.03 0.50 7.45 -51.93 -0.39 0.11 16 23 H 0.04 0.85 3.28 -51.93 -0.17 0.68 16 24 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 25 H 0.34 6.58 8.22 -39.29 -0.32 6.25 16 26 H 0.02 0.39 8.05 -51.93 -0.42 -0.03 16 27 H 0.07 1.10 7.44 -51.93 -0.39 0.72 16 28 H 0.09 1.15 8.14 -51.93 -0.42 0.72 16 29 H 0.08 0.91 8.14 -51.93 -0.42 0.49 16 30 H 0.15 1.37 8.06 -52.49 -0.42 0.95 16 31 H 0.15 1.21 8.06 -52.49 -0.42 0.78 16 LS Contribution 285.93 15.07 4.31 4.31 Total: -1.00 -29.22 285.93 -8.77 -37.99 By element: Atomic # 1 Polarization: 4.84 SS G_CDS: -3.75 Total: 1.09 kcal Atomic # 6 Polarization: -16.99 SS G_CDS: -1.25 Total: -18.24 kcal Atomic # 7 Polarization: -40.50 SS G_CDS: 0.09 Total: -40.40 kcal Atomic # 14 Polarization: 21.98 SS G_CDS: -4.14 Total: 17.84 kcal Atomic # 16 Polarization: 1.68 SS G_CDS: -2.51 Total: -0.83 kcal Atomic # 17 Polarization: -0.23 SS G_CDS: -1.52 Total: -1.75 kcal Total LS contribution 4.31 Total: 4.31 kcal Total: -29.22 -8.77 -37.99 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.292 kcal (2) G-P(sol) polarization free energy of solvation -29.218 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.074 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.768 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.306 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds