Wall clock time and date at job start Mon Mar 30 2020 06:51:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53009 * 1 3 3 H 1.09000 * 109.46624 * 2 1 4 4 C 1.50702 * 109.46918 * 240.00522 * 2 1 3 5 5 H 1.08002 * 119.99446 * 239.99482 * 4 2 1 6 6 C 1.37871 * 120.00072 * 60.00109 * 4 2 1 7 7 N 1.31516 * 119.99826 * 179.72119 * 6 4 2 8 8 Si 1.86800 * 120.00406 * 359.97438 * 6 4 2 9 9 H 1.48501 * 109.46758 * 269.72576 * 8 6 4 10 10 H 1.48499 * 109.47026 * 29.72423 * 8 6 4 11 11 H 1.48496 * 109.47474 * 149.72459 * 8 6 4 12 12 N 1.46899 * 109.46986 * 120.00260 * 2 1 3 13 13 C 1.46902 * 111.00131 * 274.99873 * 12 2 1 14 14 C 1.52996 * 109.47211 * 180.02562 * 13 12 2 15 15 C 1.50703 * 109.47002 * 180.02562 * 14 13 12 16 16 C 1.33345 * 125.18651 * 90.00072 * 15 14 13 17 17 C 1.38472 * 114.92848 * 179.97438 * 16 15 14 18 18 C 1.33508 * 114.88505 * 359.97438 * 17 16 15 19 19 Cl 1.73590 * 125.21066 * 179.97438 * 18 17 16 20 20 S 1.75875 * 125.18716 * 269.69539 * 15 14 13 21 21 H 1.09001 * 109.46592 * 179.97438 * 1 2 3 22 22 H 1.08990 * 109.47127 * 299.99571 * 1 2 3 23 23 H 1.08994 * 109.46846 * 59.99893 * 1 2 3 24 24 H 0.96999 * 120.00128 * 180.27192 * 7 6 4 25 25 H 1.00898 * 110.99583 * 151.04841 * 12 2 1 26 26 H 1.08997 * 109.46953 * 300.00617 * 13 12 2 27 27 H 1.09002 * 109.46573 * 60.00322 * 13 12 2 28 28 H 1.08996 * 109.47170 * 300.00478 * 14 13 12 29 29 H 1.08997 * 109.47309 * 60.00114 * 14 13 12 30 30 H 1.08002 * 122.53952 * 359.97438 * 16 15 14 31 31 H 1.08002 * 122.55901 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7103 -1.2306 5 1 2.6533 -1.5884 -1.1315 6 6 1.6993 -0.2392 -2.4827 7 7 2.1422 -0.8559 -3.5566 8 14 0.6248 1.2792 -2.6541 9 1 -0.8024 0.8723 -2.7065 10 1 0.8421 2.1735 -1.4886 11 1 0.9805 1.9990 -3.9033 12 7 2.0197 -0.6926 1.1994 13 6 2.0825 0.2225 2.3469 14 6 2.5963 -0.5330 3.5741 15 6 2.6601 0.4056 4.7515 16 6 1.6693 0.6202 5.6177 17 6 1.9587 1.5281 6.6223 18 6 3.1864 2.0502 6.5711 19 17 3.8284 3.2100 7.6919 20 16 4.0554 1.3792 5.1969 21 1 -0.3632 -1.0277 -0.0005 22 1 -0.3633 0.5137 0.8899 23 1 -0.3633 0.5138 -0.8899 24 1 1.9111 -0.5221 -4.4375 25 1 2.9174 -1.1205 1.0286 26 1 2.7589 1.0461 2.1182 27 1 1.0871 0.6161 2.5525 28 1 1.9203 -1.3569 3.8029 29 1 3.5917 -0.9264 3.3683 30 1 0.7133 0.1234 5.5415 31 1 1.2458 1.7936 7.3889 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000219414585.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:51:04 Heat of formation + Delta-G solvation = 4.807846 kcal Electronic energy + Delta-G solvation = -14429.841011 eV Core-core repulsion = 11862.911751 eV Total energy + Delta-G solvation = -2566.929260 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.24936 -38.11373 -37.52688 -35.03501 -33.42730 -30.80142 -27.91859 -27.08896 -24.81499 -22.97642 -21.75487 -20.38259 -18.88653 -18.41641 -17.27221 -16.78731 -15.96169 -15.75207 -15.10437 -14.94788 -14.65359 -14.34292 -14.08467 -13.89489 -13.60168 -13.44329 -12.85670 -12.76191 -12.57752 -12.33153 -12.12232 -12.05129 -11.78214 -11.63978 -11.42791 -11.05588 -10.78084 -9.57452 -9.50058 -9.18227 -8.32099 -6.36818 -0.19262 0.10856 0.84331 1.23451 1.30751 1.35290 1.45570 1.64832 2.30315 3.03235 3.36591 4.01189 4.09557 4.25495 4.36448 4.50512 4.53418 4.70121 4.72615 4.87696 4.91508 4.98279 5.01029 5.15791 5.22271 5.41401 5.50166 5.62937 5.97411 6.48654 6.62823 6.81669 7.30134 8.84264 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.040408 B = 0.003775 C = 0.003733 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 692.766683 B = 7416.070654 C = 7499.022460 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.185 3.815 3 H -0.006 1.006 4 C -0.526 4.526 5 H 0.043 0.957 6 C 0.015 3.985 7 N -0.945 5.945 8 Si 0.952 3.048 9 H -0.264 1.264 10 H -0.253 1.253 11 H -0.298 1.298 12 N -0.680 5.680 13 C 0.066 3.934 14 C -0.039 4.039 15 C -0.163 4.163 16 C -0.133 4.133 17 C -0.111 4.111 18 C -0.167 4.167 19 Cl -0.016 7.016 20 S 0.128 5.872 21 H 0.053 0.947 22 H 0.057 0.943 23 H 0.030 0.970 24 H 0.267 0.733 25 H 0.338 0.662 26 H 0.015 0.985 27 H 0.073 0.927 28 H 0.104 0.896 29 H 0.077 0.923 30 H 0.168 0.832 31 H 0.168 0.832 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.055 6.665 22.913 23.863 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.075 3.925 3 H 0.011 0.989 4 C -0.564 4.564 5 H 0.061 0.939 6 C -0.183 4.183 7 N -0.585 5.585 8 Si 0.779 3.221 9 H -0.190 1.190 10 H -0.177 1.177 11 H -0.226 1.226 12 N -0.310 5.310 13 C -0.064 4.064 14 C -0.079 4.079 15 C -0.281 4.281 16 C -0.163 4.163 17 C -0.143 4.143 18 C -0.311 4.311 19 Cl 0.012 6.988 20 S 0.390 5.610 21 H 0.072 0.928 22 H 0.076 0.924 23 H 0.048 0.952 24 H 0.076 0.924 25 H 0.155 0.845 26 H 0.034 0.966 27 H 0.091 0.909 28 H 0.122 0.878 29 H 0.096 0.904 30 H 0.185 0.815 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges 0.850 6.731 22.431 23.434 hybrid contribution -0.726 0.941 -0.229 1.210 sum 0.124 7.672 22.202 23.490 Atomic orbital electron populations 1.21979 0.97145 1.01152 0.98891 1.19382 0.92963 0.92075 0.88053 0.98860 1.21419 1.31499 1.12813 0.90702 0.93907 1.25786 0.97216 0.99939 0.95373 1.70032 1.47439 1.42449 0.98627 0.85808 0.79318 0.79859 0.77129 1.19029 1.17693 1.22571 1.60484 1.32901 1.32935 1.04724 1.21994 1.00469 0.93624 0.90327 1.20077 1.03099 0.95863 0.88850 1.24640 0.96952 1.04090 1.02462 1.20267 1.01106 1.00426 0.94499 1.20451 0.95337 0.97441 1.01094 1.25334 0.99745 1.04935 1.01072 1.98357 1.85861 1.56039 1.58536 1.84578 1.16050 1.38966 1.21358 0.92780 0.92426 0.95183 0.92411 0.84480 0.96640 0.90892 0.87765 0.90437 0.81505 0.81429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -5.60 8.89 71.99 0.64 -4.96 16 2 C 0.18 8.47 2.19 44.17 0.10 8.57 16 3 H -0.01 -0.29 6.86 -2.39 -0.02 -0.30 16 4 C -0.53 -29.55 9.17 25.60 0.23 -29.31 16 5 H 0.04 2.64 7.86 -2.91 -0.02 2.62 16 6 C 0.01 0.85 5.45 84.65 0.46 1.31 16 7 N -0.95 -58.55 13.96 21.45 0.30 -58.25 16 8 Si 0.95 44.73 24.37 68.60 1.67 46.40 16 9 H -0.26 -11.80 6.88 99.48 0.68 -11.12 16 10 H -0.25 -11.13 6.52 99.48 0.65 -10.48 16 11 H -0.30 -13.94 7.11 99.48 0.71 -13.23 16 12 N -0.68 -25.94 6.30 -495.43 -3.12 -29.06 16 13 C 0.07 1.98 5.47 86.30 0.47 2.46 16 14 C -0.04 -0.92 5.97 29.85 0.18 -0.74 16 15 C -0.16 -3.50 5.76 24.58 0.14 -3.36 16 16 C -0.13 -2.47 10.05 21.22 0.21 -2.26 16 17 C -0.11 -1.96 10.13 21.25 0.22 -1.75 16 18 C -0.17 -3.35 7.10 66.75 0.47 -2.88 16 19 Cl -0.02 -0.30 29.29 -2.72 -0.08 -0.38 16 20 S 0.13 2.76 23.33 -56.49 -1.32 1.44 16 21 H 0.05 2.28 8.14 -2.39 -0.02 2.26 16 22 H 0.06 2.03 7.45 -2.39 -0.02 2.01 16 23 H 0.03 1.29 3.28 -2.39 -0.01 1.28 16 24 H 0.27 15.48 8.31 -92.71 -0.77 14.71 16 25 H 0.34 13.09 8.22 -89.70 -0.74 12.35 16 26 H 0.02 0.49 8.05 -2.39 -0.02 0.47 16 27 H 0.07 2.14 7.44 -2.39 -0.02 2.12 16 28 H 0.10 2.25 8.14 -2.39 -0.02 2.23 16 29 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 30 H 0.17 2.45 8.06 -2.91 -0.02 2.42 16 31 H 0.17 2.18 8.06 -2.91 -0.02 2.16 16 Total: -1.00 -62.41 285.93 0.90 -61.51 By element: Atomic # 1 Polarization: 10.93 SS G_CDS: 0.32 Total: 11.25 kcal Atomic # 6 Polarization: -36.04 SS G_CDS: 3.13 Total: -32.92 kcal Atomic # 7 Polarization: -84.49 SS G_CDS: -2.82 Total: -87.31 kcal Atomic # 14 Polarization: 44.73 SS G_CDS: 1.67 Total: 46.40 kcal Atomic # 16 Polarization: 2.76 SS G_CDS: -1.32 Total: 1.44 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -62.41 0.90 -61.51 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000219414585.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.319 kcal (2) G-P(sol) polarization free energy of solvation -62.413 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.906 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.902 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.511 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds