Wall clock time and date at job start Mon Mar 30 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 S 1.71002 * 125.55320 * 2 1 4 4 C 1.75916 * 90.77296 * 180.02562 * 3 2 1 5 5 C 1.47769 * 125.05948 * 179.91349 * 4 3 2 6 6 C 1.39645 * 120.14243 * 179.70070 * 5 4 3 7 7 C 1.37925 * 119.84702 * 179.97438 * 6 5 4 8 8 C 1.38396 * 120.14516 * 359.97438 * 7 6 5 9 9 C 1.38347 * 120.30510 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.92768 * 179.97438 * 9 8 7 11 11 C 1.37964 * 120.15030 * 359.97438 * 9 8 7 12 12 N 1.29843 * 109.87426 * 359.65220 * 4 3 2 13 13 C 1.32759 * 116.00486 * 0.26548 * 12 4 3 14 14 C 1.41152 * 122.77132 * 180.02562 * 13 12 4 15 15 H 1.08002 * 120.00045 * 179.97438 * 14 13 12 16 16 C 1.39659 * 119.99960 * 359.97330 * 14 13 12 17 17 N 1.31043 * 119.99862 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47248 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47111 * 119.99855 * 18 16 14 21 21 H 1.48497 * 109.47122 * 239.99999 * 18 16 14 22 22 H 1.08997 * 109.47479 * 270.31148 * 1 2 3 23 23 H 1.08998 * 109.47462 * 30.31697 * 1 2 3 24 24 H 1.09004 * 109.47136 * 150.31615 * 1 2 3 25 25 H 1.07998 * 120.08018 * 359.69999 * 6 5 4 26 26 H 1.08000 * 119.92648 * 179.97438 * 7 6 5 27 27 H 1.08008 * 119.84755 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.46959 * 270.02265 * 10 9 8 29 29 H 1.08994 * 109.46991 * 30.01857 * 10 9 8 30 30 H 1.09002 * 109.47206 * 150.02388 * 10 9 8 31 31 H 1.07993 * 120.08094 * 179.97438 * 11 9 8 32 32 H 0.97007 * 119.99528 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5012 1.3912 0.0000 4 6 3.9461 0.3878 -0.0008 5 6 5.3333 0.8970 -0.0030 6 6 6.4077 0.0051 0.0029 7 6 7.7000 0.4871 0.0003 8 6 7.9329 1.8513 -0.0087 9 6 6.8731 2.7405 -0.0146 10 6 7.1365 4.2242 -0.0237 11 6 5.5754 2.2719 -0.0120 12 7 3.6121 -0.8670 0.0064 13 6 2.3094 -1.1225 0.0071 14 6 1.7881 -2.4343 0.0150 15 1 0.7195 -2.5907 0.0157 16 6 2.6542 -3.5298 0.0221 17 7 3.9508 -3.3400 0.0208 18 14 1.9644 -5.2658 0.0333 19 1 0.4804 -5.2088 0.0324 20 1 2.4320 -5.9921 -1.1745 21 1 2.4321 -5.9765 1.2504 22 1 -0.3634 0.0056 1.0276 23 1 -0.3634 0.8871 -0.5187 24 1 -0.3633 -0.8928 -0.5089 25 1 6.2273 -1.0596 0.0139 26 1 8.5320 -0.2015 0.0052 27 1 8.9469 2.2235 -0.0103 28 1 7.2001 4.5883 1.0017 29 1 8.0762 4.4232 -0.5388 30 1 6.3236 4.7344 -0.5406 31 1 4.7489 2.9670 -0.0162 32 1 4.5524 -4.1010 0.0261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222309029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:16 Heat of formation + Delta-G solvation = 45.604765 kcal Electronic energy + Delta-G solvation = -16149.385980 eV Core-core repulsion = 13586.658656 eV Total energy + Delta-G solvation = -2562.727324 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -38.96525 -37.70601 -33.45589 -32.53062 -31.59842 -30.19726 -27.36346 -26.54119 -24.40174 -22.96118 -21.67083 -20.54932 -18.58036 -16.86453 -16.12705 -15.46360 -15.22520 -14.56795 -14.39790 -13.69373 -13.45570 -13.20504 -12.87926 -12.65463 -12.09907 -12.05499 -11.87477 -11.51941 -11.45876 -11.44285 -11.17890 -10.78005 -10.68420 -10.54778 -10.34929 -9.49512 -9.43096 -8.66047 -8.33664 -8.07605 -7.80534 -7.03664 -6.55869 -4.35822 1.28865 1.79305 2.54609 2.80749 3.04632 3.09253 3.14019 3.54317 3.98332 4.07794 4.48519 4.95908 5.10396 5.30141 5.48345 5.53611 5.56021 5.70404 5.86764 5.90924 6.02232 6.31892 6.35393 6.41796 6.54539 6.61480 6.72976 6.90611 6.98487 7.05779 7.11627 7.24421 7.39636 7.55511 8.17661 8.52460 8.86558 9.56308 10.31734 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.006617 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.759237 B = 4230.499882 C = 5402.809751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.023 4.023 2 C -0.419 4.419 3 S -0.010 6.010 4 C 0.071 3.929 5 C 0.011 3.989 6 C -0.084 4.084 7 C -0.122 4.122 8 C -0.127 4.127 9 C -0.094 4.094 10 C -0.109 4.109 11 C -0.110 4.110 12 N -0.384 5.384 13 C 0.226 3.774 14 C -0.426 4.426 15 H 0.087 0.913 16 C 0.071 3.929 17 N -0.751 5.751 18 Si 0.911 3.089 19 H -0.261 1.261 20 H -0.274 1.274 21 H -0.274 1.274 22 H 0.037 0.963 23 H 0.035 0.965 24 H 0.057 0.943 25 H 0.142 0.858 26 H 0.120 0.880 27 H 0.116 0.884 28 H 0.066 0.934 29 H 0.062 0.938 30 H 0.064 0.936 31 H 0.121 0.879 32 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.494 7.476 -0.059 9.278 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.540 4.540 3 S 0.242 5.758 4 C -0.207 4.207 5 C 0.007 3.993 6 C -0.105 4.105 7 C -0.140 4.140 8 C -0.146 4.146 9 C -0.095 4.095 10 C -0.166 4.166 11 C -0.131 4.131 12 N -0.098 5.098 13 C 0.101 3.899 14 C -0.461 4.461 15 H 0.105 0.895 16 C -0.151 4.151 17 N -0.375 5.375 18 Si 0.735 3.265 19 H -0.185 1.185 20 H -0.199 1.199 21 H -0.199 1.199 22 H 0.056 0.944 23 H 0.054 0.946 24 H 0.076 0.924 25 H 0.160 0.840 26 H 0.138 0.862 27 H 0.134 0.866 28 H 0.085 0.915 29 H 0.081 0.919 30 H 0.083 0.917 31 H 0.139 0.861 32 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 5.846 7.969 -0.055 9.884 hybrid contribution -0.665 -1.774 0.021 1.895 sum 5.182 6.195 -0.034 8.076 Atomic orbital electron populations 1.19484 0.89677 0.99848 0.99229 1.24215 0.99258 0.93502 1.36987 1.82428 1.01856 1.14508 1.77044 1.25721 0.95026 0.91754 1.08212 1.18070 0.89547 0.92541 0.99174 1.21490 0.90972 1.01165 0.96850 1.21059 0.96697 0.95196 1.01036 1.20988 0.98055 0.93231 1.02369 1.19658 0.92840 0.95714 1.01239 1.20735 1.02017 0.91847 1.01990 1.21038 0.96361 0.94178 1.01499 1.67433 1.17893 1.13371 1.11059 1.17754 0.84286 0.93909 0.93934 1.19001 0.94356 0.87972 1.44729 0.89535 1.25977 0.94698 1.01344 0.93085 1.70117 1.02741 1.32129 1.32465 0.86219 0.80307 0.81519 0.78446 1.18476 1.19931 1.19922 0.94427 0.94640 0.92422 0.84002 0.86173 0.86622 0.91503 0.91867 0.91705 0.86075 0.91648 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.49 10.00 36.00 0.36 -0.13 16 2 C -0.42 -10.52 6.48 -34.40 -0.22 -10.74 16 3 S -0.01 -0.23 22.05 -107.50 -2.37 -2.60 16 4 C 0.07 1.71 7.30 -14.50 -0.11 1.60 16 5 C 0.01 0.22 5.87 -104.97 -0.62 -0.40 16 6 C -0.08 -1.63 9.68 -39.17 -0.38 -2.01 16 7 C -0.12 -1.91 10.03 -39.64 -0.40 -2.30 16 8 C -0.13 -1.80 9.69 -39.48 -0.38 -2.18 16 9 C -0.09 -1.38 5.87 -104.68 -0.61 -2.00 16 10 C -0.11 -1.19 10.01 36.01 0.36 -0.83 16 11 C -0.11 -1.92 9.25 -39.17 -0.36 -2.28 16 12 N -0.38 -10.49 7.98 -9.17 -0.07 -10.56 16 13 C 0.23 6.26 6.45 -86.45 -0.56 5.70 16 14 C -0.43 -11.61 8.90 -37.95 -0.34 -11.95 16 15 H 0.09 2.24 6.75 -52.49 -0.35 1.88 16 16 C 0.07 1.83 5.49 -17.36 -0.10 1.74 16 17 N -0.75 -20.02 11.69 55.53 0.65 -19.37 16 18 Si 0.91 19.04 29.56 -169.99 -5.02 14.01 16 19 H -0.26 -5.36 7.11 56.52 0.40 -4.96 16 20 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 21 H -0.27 -5.64 7.11 56.52 0.40 -5.24 16 22 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 23 H 0.03 0.68 8.14 -51.93 -0.42 0.25 16 24 H 0.06 1.22 7.08 -51.93 -0.37 0.85 16 25 H 0.14 3.06 7.80 -52.49 -0.41 2.65 16 26 H 0.12 1.57 8.06 -52.49 -0.42 1.14 16 27 H 0.12 1.29 8.06 -52.48 -0.42 0.86 16 28 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 29 H 0.06 0.58 8.08 -51.93 -0.42 0.16 16 30 H 0.06 0.67 8.08 -51.93 -0.42 0.25 16 31 H 0.12 2.00 7.27 -52.49 -0.38 1.62 16 32 H 0.27 6.60 8.30 -40.82 -0.34 6.26 16 LS Contribution 291.53 15.07 4.39 4.39 Total: -1.00 -29.46 291.53 -9.38 -38.84 By element: Atomic # 1 Polarization: 4.67 SS G_CDS: -3.60 Total: 1.07 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -3.35 Total: -25.78 kcal Atomic # 7 Polarization: -30.51 SS G_CDS: 0.58 Total: -29.93 kcal Atomic # 14 Polarization: 19.04 SS G_CDS: -5.02 Total: 14.01 kcal Atomic # 16 Polarization: -0.23 SS G_CDS: -2.37 Total: -2.60 kcal Total LS contribution 4.39 Total: 4.39 kcal Total: -29.46 -9.38 -38.84 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222309029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.445 kcal (2) G-P(sol) polarization free energy of solvation -29.462 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 54.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.379 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.840 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.605 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds