Wall clock time and date at job start Mon Mar 30 2020 07:09:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50692 * 1 3 3 S 1.71002 * 125.55320 * 2 1 4 4 C 1.75916 * 90.77296 * 180.02562 * 3 2 1 5 5 C 1.47769 * 125.05948 * 179.91349 * 4 3 2 6 6 C 1.39645 * 120.14243 * 179.70070 * 5 4 3 7 7 C 1.37925 * 119.84702 * 179.97438 * 6 5 4 8 8 C 1.38396 * 120.14516 * 359.97438 * 7 6 5 9 9 C 1.38347 * 120.30510 * 0.02562 * 8 7 6 10 10 C 1.50702 * 119.92768 * 179.97438 * 9 8 7 11 11 C 1.37964 * 120.15030 * 359.97438 * 9 8 7 12 12 N 1.29843 * 109.87426 * 359.65220 * 4 3 2 13 13 C 1.32759 * 116.00486 * 0.26548 * 12 4 3 14 14 C 1.41152 * 122.77132 * 180.02562 * 13 12 4 15 15 H 1.08002 * 120.00045 * 179.97438 * 14 13 12 16 16 C 1.39659 * 119.99960 * 359.97330 * 14 13 12 17 17 N 1.31043 * 119.99862 * 359.97438 * 16 14 13 18 18 Si 1.86806 * 119.99877 * 179.97438 * 16 14 13 19 19 H 1.48501 * 109.47248 * 0.02562 * 18 16 14 20 20 H 1.48495 * 109.47111 * 119.99855 * 18 16 14 21 21 H 1.48497 * 109.47122 * 239.99999 * 18 16 14 22 22 H 1.08997 * 109.47479 * 270.31148 * 1 2 3 23 23 H 1.08998 * 109.47462 * 30.31697 * 1 2 3 24 24 H 1.09004 * 109.47136 * 150.31615 * 1 2 3 25 25 H 1.07998 * 120.08018 * 359.69999 * 6 5 4 26 26 H 1.08000 * 119.92648 * 179.97438 * 7 6 5 27 27 H 1.08008 * 119.84755 * 179.97438 * 8 7 6 28 28 H 1.09000 * 109.46959 * 270.02265 * 10 9 8 29 29 H 1.08994 * 109.46991 * 30.01857 * 10 9 8 30 30 H 1.09002 * 109.47206 * 150.02388 * 10 9 8 31 31 H 1.07993 * 120.08094 * 179.97438 * 11 9 8 32 32 H 0.97007 * 119.99528 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 16 2.5012 1.3912 0.0000 4 6 3.9461 0.3878 -0.0008 5 6 5.3333 0.8970 -0.0030 6 6 6.4077 0.0051 0.0029 7 6 7.7000 0.4871 0.0003 8 6 7.9329 1.8513 -0.0087 9 6 6.8731 2.7405 -0.0146 10 6 7.1365 4.2242 -0.0237 11 6 5.5754 2.2719 -0.0120 12 7 3.6121 -0.8670 0.0064 13 6 2.3094 -1.1225 0.0071 14 6 1.7881 -2.4343 0.0150 15 1 0.7195 -2.5907 0.0157 16 6 2.6542 -3.5298 0.0221 17 7 3.9508 -3.3400 0.0208 18 14 1.9644 -5.2658 0.0333 19 1 0.4804 -5.2088 0.0324 20 1 2.4320 -5.9921 -1.1745 21 1 2.4321 -5.9765 1.2504 22 1 -0.3634 0.0056 1.0276 23 1 -0.3634 0.8871 -0.5187 24 1 -0.3633 -0.8928 -0.5089 25 1 6.2273 -1.0596 0.0139 26 1 8.5320 -0.2015 0.0052 27 1 8.9469 2.2235 -0.0103 28 1 7.2001 4.5883 1.0017 29 1 8.0762 4.4232 -0.5388 30 1 6.3236 4.7344 -0.5406 31 1 4.7489 2.9670 -0.0162 32 1 4.5524 -4.1010 0.0261 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222309029.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:16 Heat of formation + Delta-G solvation = 29.967925 kcal Electronic energy + Delta-G solvation = -16150.064044 eV Core-core repulsion = 13586.658656 eV Total energy + Delta-G solvation = -2563.405388 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.40289 -39.46131 -35.26833 -33.99925 -33.07301 -31.75092 -29.22226 -27.66456 -26.13367 -24.70532 -23.00772 -22.17240 -20.31396 -18.68929 -17.62757 -17.21981 -16.88498 -16.01248 -15.79942 -15.26214 -15.02839 -14.49893 -14.44293 -13.94251 -13.63399 -13.59357 -13.34692 -13.20086 -13.02522 -12.91836 -12.67331 -12.40730 -12.17602 -12.11434 -11.89234 -11.34257 -11.25481 -10.19982 -9.94496 -9.68939 -9.58896 -8.81418 -8.44984 -6.35422 -0.27150 0.49350 0.89882 0.98768 1.36027 1.40531 1.51713 1.65627 2.22172 2.35925 2.94843 3.47692 3.50427 4.01937 4.06620 4.29621 4.47665 4.59139 4.62217 4.65077 4.79325 4.90796 4.93324 4.96191 5.06207 5.09464 5.25990 5.34713 5.39001 5.56555 5.64361 5.68929 5.70666 6.11398 6.18668 6.57184 6.88963 7.67600 8.44577 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.023469 B = 0.006617 C = 0.005181 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1192.759237 B = 4230.499882 C = 5402.809751 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.019 4.019 2 C -0.446 4.446 3 S 0.040 5.960 4 C 0.063 3.937 5 C -0.030 4.030 6 C -0.107 4.107 7 C -0.117 4.117 8 C -0.110 4.110 9 C -0.088 4.088 10 C -0.108 4.108 11 C -0.114 4.114 12 N -0.429 5.429 13 C 0.189 3.811 14 C -0.464 4.464 15 H 0.088 0.912 16 C 0.025 3.975 17 N -0.787 5.787 18 Si 0.989 3.011 19 H -0.255 1.255 20 H -0.267 1.267 21 H -0.267 1.267 22 H 0.046 0.954 23 H 0.057 0.943 24 H 0.054 0.946 25 H 0.106 0.894 26 H 0.147 0.853 27 H 0.161 0.839 28 H 0.082 0.918 29 H 0.088 0.912 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.278 0.722 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.974 9.215 -0.067 11.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.567 4.567 3 S 0.293 5.707 4 C -0.214 4.214 5 C -0.033 4.033 6 C -0.128 4.128 7 C -0.135 4.135 8 C -0.129 4.129 9 C -0.088 4.088 10 C -0.164 4.164 11 C -0.135 4.135 12 N -0.144 5.144 13 C 0.065 3.935 14 C -0.498 4.498 15 H 0.106 0.894 16 C -0.194 4.194 17 N -0.411 5.411 18 Si 0.810 3.190 19 H -0.178 1.178 20 H -0.192 1.192 21 H -0.192 1.192 22 H 0.065 0.935 23 H 0.076 0.924 24 H 0.072 0.928 25 H 0.124 0.876 26 H 0.165 0.835 27 H 0.179 0.821 28 H 0.101 0.899 29 H 0.107 0.893 30 H 0.088 0.912 31 H 0.144 0.856 32 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 7.311 9.742 -0.063 12.180 hybrid contribution -0.973 -2.092 0.024 2.307 sum 6.338 7.650 -0.038 9.934 Atomic orbital electron populations 1.19523 0.87538 1.00740 1.00077 1.24854 1.01301 0.94319 1.36210 1.81957 1.00113 1.12491 1.76170 1.26486 0.97282 0.91560 1.06105 1.18238 0.88075 0.94311 1.02724 1.21350 0.92832 0.99465 0.99193 1.21350 0.95527 0.96905 0.99703 1.21508 1.00083 0.92097 0.99193 1.20164 0.91576 0.98246 0.98806 1.20834 1.03563 0.88586 1.03445 1.21176 0.98190 0.92555 1.01552 1.67427 1.18060 1.15170 1.13740 1.18250 0.85216 0.95154 0.94927 1.19309 0.94784 0.88962 1.46778 0.89399 1.26909 0.94820 1.05504 0.92135 1.70238 1.04061 1.33558 1.33281 0.85055 0.79651 0.75654 0.78689 1.17824 1.19174 1.19176 0.93483 0.92425 0.92756 0.87570 0.83494 0.82141 0.89944 0.89326 0.91173 0.85626 0.91188 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.84 10.00 71.23 0.71 -0.13 16 2 C -0.45 -23.03 6.48 25.62 0.17 -22.87 16 3 S 0.04 1.81 22.05 -56.49 -1.25 0.57 16 4 C 0.06 3.19 7.30 87.51 0.64 3.83 16 5 C -0.03 -1.25 5.87 -20.09 -0.12 -1.37 16 6 C -0.11 -4.30 9.68 22.54 0.22 -4.08 16 7 C -0.12 -3.46 10.03 22.23 0.22 -3.24 16 8 C -0.11 -2.66 9.69 22.33 0.22 -2.45 16 9 C -0.09 -2.28 5.87 -19.90 -0.12 -2.40 16 10 C -0.11 -1.84 10.01 71.24 0.71 -1.12 16 11 C -0.11 -3.85 9.25 22.53 0.21 -3.65 16 12 N -0.43 -24.86 7.98 -182.93 -1.46 -26.32 16 13 C 0.19 11.02 6.45 39.66 0.26 11.28 16 14 C -0.46 -26.51 8.90 23.33 0.21 -26.30 16 15 H 0.09 4.75 6.75 -2.91 -0.02 4.73 16 16 C 0.02 1.33 5.49 85.15 0.47 1.79 16 17 N -0.79 -44.24 11.69 21.78 0.25 -43.98 16 18 Si 0.99 40.26 29.56 68.60 2.03 42.28 16 19 H -0.25 -9.97 7.11 99.48 0.71 -9.26 16 20 H -0.27 -10.44 7.11 99.48 0.71 -9.73 16 21 H -0.27 -10.44 7.11 99.48 0.71 -9.74 16 22 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 23 H 0.06 2.16 8.14 -2.39 -0.02 2.14 16 24 H 0.05 2.33 7.08 -2.39 -0.02 2.31 16 25 H 0.11 4.98 7.80 -2.91 -0.02 4.95 16 26 H 0.15 3.48 8.06 -2.91 -0.02 3.46 16 27 H 0.16 2.53 8.06 -2.91 -0.02 2.51 16 28 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.11 8.08 -2.39 -0.02 1.10 16 30 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 31 H 0.13 4.00 7.27 -2.91 -0.02 3.98 16 32 H 0.28 14.14 8.30 -92.70 -0.77 13.37 16 Total: -1.00 -68.60 291.53 4.50 -64.10 By element: Atomic # 1 Polarization: 12.91 SS G_CDS: 1.13 Total: 14.04 kcal Atomic # 6 Polarization: -54.48 SS G_CDS: 3.79 Total: -50.69 kcal Atomic # 7 Polarization: -69.10 SS G_CDS: -1.21 Total: -70.31 kcal Atomic # 14 Polarization: 40.26 SS G_CDS: 2.03 Total: 42.28 kcal Atomic # 16 Polarization: 1.81 SS G_CDS: -1.25 Total: 0.57 kcal Total: -68.60 4.50 -64.10 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222309029.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 94.073 kcal (2) G-P(sol) polarization free energy of solvation -68.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 25.472 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.105 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.968 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds