Wall clock time and date at job start Mon Mar 30 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38403 * 119.92828 * 2 1 4 4 C 1.38345 * 120.30103 * 180.25581 * 3 2 1 5 5 C 1.37971 * 120.15013 * 359.45026 * 4 3 2 6 6 C 1.50694 * 120.07714 * 180.29783 * 5 4 3 7 7 C 1.39598 * 119.84769 * 0.26790 * 5 4 3 8 8 C 1.47765 * 120.15229 * 179.97438 * 7 5 4 9 9 N 1.29836 * 125.06597 * 228.08840 * 8 7 5 10 10 C 1.32764 * 116.00451 * 179.78258 * 9 8 7 11 11 C 1.41155 * 122.77270 * 180.27576 * 10 9 8 12 12 H 1.08004 * 120.00322 * 180.24677 * 11 10 9 13 13 C 1.39663 * 120.00154 * 0.24692 * 11 10 9 14 14 N 1.31040 * 119.99749 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47045 * 89.99631 * 15 13 11 17 17 H 1.48491 * 109.47323 * 209.99822 * 15 13 11 18 18 H 1.48498 * 109.46989 * 330.00049 * 15 13 11 19 19 C 1.37986 * 114.45538 * 0.50008 * 10 9 8 20 20 S 1.70994 * 108.89119 * 359.73869 * 19 10 9 21 21 C 1.37924 * 119.92860 * 179.70411 * 2 1 3 22 22 H 1.08996 * 109.46919 * 270.30231 * 1 2 3 23 23 H 1.09000 * 109.46764 * 30.29750 * 1 2 3 24 24 H 1.08996 * 109.46898 * 150.29399 * 1 2 3 25 25 H 1.08001 * 119.84703 * 359.97423 * 3 2 1 26 26 H 1.08001 * 119.92981 * 179.72309 * 4 3 2 27 27 H 1.09007 * 109.47521 * 95.58867 * 6 5 4 28 28 H 1.09002 * 109.47083 * 215.58712 * 6 5 4 29 29 H 1.08996 * 109.47580 * 335.58833 * 6 5 4 30 30 H 0.97000 * 120.00447 * 180.02562 * 14 13 11 31 31 H 1.08002 * 125.55207 * 179.71319 * 19 10 9 32 32 H 1.08003 * 120.06800 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1995 0.0000 4 6 3.5809 1.2085 -0.0053 5 6 4.2817 0.0200 0.0008 6 6 5.7886 0.0318 0.0017 7 6 3.5915 -1.1935 0.0067 8 6 4.3353 -2.4703 0.0126 9 7 4.0972 -3.4759 -0.7734 10 6 4.8807 -4.5360 -0.6159 11 6 4.7514 -5.7045 -1.3972 12 1 5.4110 -6.5429 -1.2282 13 6 3.7706 -5.7766 -2.3889 14 7 2.9707 -4.7592 -2.5943 15 14 3.5991 -7.3231 -3.4223 16 1 2.6495 -8.2557 -2.7638 17 1 3.0868 -6.9643 -4.7691 18 1 4.9247 -7.9790 -3.5555 19 6 5.8287 -4.4032 0.3780 20 16 5.6704 -2.8570 1.0909 21 6 2.1951 -1.1953 0.0062 22 1 -0.3633 0.0054 1.0276 23 1 -0.3633 0.8873 -0.5185 24 1 -0.3633 -0.8926 -0.5092 25 1 1.6538 2.1327 -0.0004 26 1 4.1136 2.1479 -0.0098 27 1 6.1521 -0.0606 1.0252 28 1 6.1588 -0.8039 -0.5921 29 1 6.1449 0.9683 -0.4272 30 1 2.2892 -4.8092 -3.2827 31 1 6.5524 -5.1536 0.6599 32 1 1.6550 -2.1306 0.0114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000222309095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:38 Heat of formation + Delta-G solvation = 47.795535 kcal Electronic energy + Delta-G solvation = -16336.652480 eV Core-core repulsion = 13774.020156 eV Total energy + Delta-G solvation = -2562.632325 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -39.18485 -37.59180 -33.77947 -33.12151 -31.21720 -28.99047 -28.48040 -25.62248 -24.73038 -23.79016 -21.49059 -20.17139 -18.57719 -17.51069 -15.75113 -15.20084 -15.16312 -15.09766 -14.36027 -13.76336 -13.46857 -13.03211 -12.83964 -12.66422 -12.48781 -12.22273 -11.83805 -11.66189 -11.55054 -11.26052 -11.12697 -10.78622 -10.68973 -10.65616 -10.37160 -9.67953 -9.32805 -8.61470 -8.18453 -8.03429 -7.82190 -7.23060 -6.52934 -4.36884 1.41683 1.76838 2.37235 2.92496 3.05928 3.09851 3.13872 3.63805 4.00331 4.08062 4.36623 5.08003 5.14638 5.16176 5.37917 5.48437 5.51331 5.68725 5.78642 5.83535 6.00162 6.02736 6.13847 6.28726 6.37115 6.58043 6.67481 6.80000 6.98336 7.02348 7.10933 7.24086 7.36527 7.48953 8.17864 8.53207 8.87427 9.58220 10.34035 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.007064 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.822787 B = 3962.572440 C = 4945.035989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.099 4.099 3 C -0.120 4.120 4 C -0.122 4.122 5 C -0.074 4.074 6 C -0.117 4.117 7 C 0.010 3.990 8 C 0.078 3.922 9 N -0.382 5.382 10 C 0.225 3.775 11 C -0.432 4.432 12 H 0.084 0.916 13 C 0.071 3.929 14 N -0.750 5.750 15 Si 0.911 3.089 16 H -0.270 1.270 17 H -0.277 1.277 18 H -0.262 1.262 19 C -0.456 4.456 20 S -0.011 6.011 21 C -0.074 4.074 22 H 0.065 0.935 23 H 0.062 0.938 24 H 0.066 0.934 25 H 0.117 0.883 26 H 0.120 0.880 27 H 0.072 0.928 28 H 0.074 0.926 29 H 0.061 0.939 30 H 0.274 0.726 31 H 0.139 0.861 32 H 0.127 0.873 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.389 9.558 3.216 10.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.100 4.100 3 C -0.139 4.139 4 C -0.140 4.140 5 C -0.076 4.076 6 C -0.174 4.174 7 C 0.006 3.994 8 C -0.202 4.202 9 N -0.096 5.096 10 C 0.101 3.899 11 C -0.466 4.466 12 H 0.102 0.898 13 C -0.151 4.151 14 N -0.373 5.373 15 Si 0.735 3.265 16 H -0.195 1.195 17 H -0.202 1.202 18 H -0.186 1.186 19 C -0.595 4.595 20 S 0.240 5.760 21 C -0.095 4.095 22 H 0.084 0.916 23 H 0.081 0.919 24 H 0.085 0.915 25 H 0.135 0.865 26 H 0.138 0.862 27 H 0.091 0.909 28 H 0.093 0.907 29 H 0.080 0.920 30 H 0.084 0.916 31 H 0.156 0.844 32 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges -2.436 10.070 3.460 10.923 hybrid contribution -0.087 -1.681 -1.033 1.975 sum -2.523 8.389 2.427 9.090 Atomic orbital electron populations 1.20734 0.91429 1.02571 1.01882 1.19764 0.95870 0.92913 1.01407 1.20959 0.94062 0.97090 1.01824 1.20788 0.93957 0.96893 1.02377 1.19945 0.96142 0.91974 0.99562 1.20897 0.91131 1.02620 1.02728 1.17866 0.92279 0.89186 1.00052 1.25776 0.98726 0.97337 0.98369 1.67555 1.23783 0.98669 1.19605 1.17897 0.88136 0.91743 0.92136 1.18945 1.14852 0.98831 1.14003 0.89784 1.25981 0.94712 0.97394 0.97043 1.70120 1.12733 1.28711 1.25739 0.86271 0.79544 0.81641 0.79013 1.19479 1.20207 1.18633 1.25362 1.17012 1.02548 1.14590 1.82601 1.36658 1.13826 1.42955 1.21151 0.92769 0.97837 0.97714 0.91587 0.91928 0.91473 0.86524 0.86204 0.90907 0.90711 0.91987 0.91559 0.84364 0.85460 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.35 10.01 36.00 0.36 -0.99 16 2 C -0.10 -1.55 5.87 -104.68 -0.61 -2.17 16 3 C -0.12 -1.70 9.69 -39.48 -0.38 -2.09 16 4 C -0.12 -1.80 9.67 -39.64 -0.38 -2.18 16 5 C -0.07 -1.30 5.91 -104.22 -0.62 -1.91 16 6 C -0.12 -1.86 8.49 36.00 0.31 -1.55 16 7 C 0.01 0.21 5.85 -104.97 -0.61 -0.40 16 8 C 0.08 1.87 6.03 -14.50 -0.09 1.78 16 9 N -0.38 -10.56 8.46 -9.17 -0.08 -10.64 16 10 C 0.22 6.35 6.45 -86.45 -0.56 5.79 16 11 C -0.43 -12.03 9.23 -37.94 -0.35 -12.38 16 12 H 0.08 2.22 7.84 -52.48 -0.41 1.81 16 13 C 0.07 1.87 5.49 -17.36 -0.10 1.77 16 14 N -0.75 -20.47 11.69 55.53 0.65 -19.82 16 15 Si 0.91 19.30 29.56 -169.99 -5.02 14.28 16 16 H -0.27 -5.61 7.11 56.52 0.40 -5.21 16 17 H -0.28 -5.73 7.11 56.52 0.40 -5.33 16 18 H -0.26 -5.47 7.11 56.52 0.40 -5.07 16 19 C -0.46 -11.77 10.99 30.64 0.34 -11.43 16 20 S -0.01 -0.25 20.89 -107.50 -2.25 -2.50 16 21 C -0.07 -1.42 9.44 -39.17 -0.37 -1.79 16 22 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.65 8.09 -51.93 -0.42 0.23 16 24 H 0.07 0.84 8.08 -51.93 -0.42 0.42 16 25 H 0.12 1.29 8.06 -52.49 -0.42 0.87 16 26 H 0.12 1.41 8.06 -52.49 -0.42 0.98 16 27 H 0.07 1.09 7.84 -51.92 -0.41 0.68 16 28 H 0.07 1.37 6.77 -51.93 -0.35 1.02 16 29 H 0.06 0.80 8.05 -51.93 -0.42 0.39 16 30 H 0.27 6.81 8.30 -40.82 -0.34 6.47 16 31 H 0.14 3.39 8.06 -52.49 -0.42 2.97 16 32 H 0.13 2.59 8.06 -52.48 -0.42 2.17 16 LS Contribution 290.37 15.07 4.38 4.38 Total: -1.00 -30.07 290.37 -9.07 -39.14 By element: Atomic # 1 Polarization: 6.38 SS G_CDS: -3.68 Total: 2.71 kcal Atomic # 6 Polarization: -24.48 SS G_CDS: -3.07 Total: -27.55 kcal Atomic # 7 Polarization: -31.02 SS G_CDS: 0.57 Total: -30.45 kcal Atomic # 14 Polarization: 19.30 SS G_CDS: -5.02 Total: 14.28 kcal Atomic # 16 Polarization: -0.25 SS G_CDS: -2.25 Total: -2.50 kcal Total LS contribution 4.38 Total: 4.38 kcal Total: -30.07 -9.07 -39.14 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222309095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.936 kcal (2) G-P(sol) polarization free energy of solvation -30.072 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 56.863 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.068 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.140 kcal (6) G-S(sol) free energy of system = (1) + (5) 47.796 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds