Wall clock time and date at job start Mon Mar 30 2020 07:09:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50698 * 1 3 3 C 1.38403 * 119.92828 * 2 1 4 4 C 1.38345 * 120.30103 * 180.25581 * 3 2 1 5 5 C 1.37971 * 120.15013 * 359.45026 * 4 3 2 6 6 C 1.50694 * 120.07714 * 180.29783 * 5 4 3 7 7 C 1.39598 * 119.84769 * 0.26790 * 5 4 3 8 8 C 1.47765 * 120.15229 * 179.97438 * 7 5 4 9 9 N 1.29836 * 125.06597 * 228.08840 * 8 7 5 10 10 C 1.32764 * 116.00451 * 179.78258 * 9 8 7 11 11 C 1.41155 * 122.77270 * 180.27576 * 10 9 8 12 12 H 1.08004 * 120.00322 * 180.24677 * 11 10 9 13 13 C 1.39663 * 120.00154 * 0.24692 * 11 10 9 14 14 N 1.31040 * 119.99749 * 0.02562 * 13 11 10 15 15 Si 1.86799 * 120.00195 * 180.02562 * 13 11 10 16 16 H 1.48499 * 109.47045 * 89.99631 * 15 13 11 17 17 H 1.48491 * 109.47323 * 209.99822 * 15 13 11 18 18 H 1.48498 * 109.46989 * 330.00049 * 15 13 11 19 19 C 1.37986 * 114.45538 * 0.50008 * 10 9 8 20 20 S 1.70994 * 108.89119 * 359.73869 * 19 10 9 21 21 C 1.37924 * 119.92860 * 179.70411 * 2 1 3 22 22 H 1.08996 * 109.46919 * 270.30231 * 1 2 3 23 23 H 1.09000 * 109.46764 * 30.29750 * 1 2 3 24 24 H 1.08996 * 109.46898 * 150.29399 * 1 2 3 25 25 H 1.08001 * 119.84703 * 359.97423 * 3 2 1 26 26 H 1.08001 * 119.92981 * 179.72309 * 4 3 2 27 27 H 1.09007 * 109.47521 * 95.58867 * 6 5 4 28 28 H 1.09002 * 109.47083 * 215.58712 * 6 5 4 29 29 H 1.08996 * 109.47580 * 335.58833 * 6 5 4 30 30 H 0.97000 * 120.00447 * 180.02562 * 14 13 11 31 31 H 1.08002 * 125.55207 * 179.71319 * 19 10 9 32 32 H 1.08003 * 120.06800 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1975 1.1995 0.0000 4 6 3.5809 1.2085 -0.0053 5 6 4.2817 0.0200 0.0008 6 6 5.7886 0.0318 0.0017 7 6 3.5915 -1.1935 0.0067 8 6 4.3353 -2.4703 0.0126 9 7 4.0972 -3.4759 -0.7734 10 6 4.8807 -4.5360 -0.6159 11 6 4.7514 -5.7045 -1.3972 12 1 5.4110 -6.5429 -1.2282 13 6 3.7706 -5.7766 -2.3889 14 7 2.9707 -4.7592 -2.5943 15 14 3.5991 -7.3231 -3.4223 16 1 2.6495 -8.2557 -2.7638 17 1 3.0868 -6.9643 -4.7691 18 1 4.9247 -7.9790 -3.5555 19 6 5.8287 -4.4032 0.3780 20 16 5.6704 -2.8570 1.0909 21 6 2.1951 -1.1953 0.0062 22 1 -0.3633 0.0054 1.0276 23 1 -0.3633 0.8873 -0.5185 24 1 -0.3633 -0.8926 -0.5092 25 1 1.6538 2.1327 -0.0004 26 1 4.1136 2.1479 -0.0098 27 1 6.1521 -0.0606 1.0252 28 1 6.1588 -0.8039 -0.5921 29 1 6.1449 0.9683 -0.4272 30 1 2.2892 -4.8092 -3.2827 31 1 6.5524 -5.1536 0.6599 32 1 1.6550 -2.1306 0.0114 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222309095.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:38 Heat of formation + Delta-G solvation = 31.117340 kcal Electronic energy + Delta-G solvation = -16337.375701 eV Core-core repulsion = 13774.020156 eV Total energy + Delta-G solvation = -2563.355545 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.35 seconds Orbital eigenvalues (eV) -40.58509 -39.43211 -35.35364 -34.75699 -32.73324 -30.39815 -30.03842 -27.64318 -26.09052 -25.24514 -23.03549 -21.68717 -20.31727 -19.44373 -17.40215 -17.05044 -16.57456 -16.50416 -15.93668 -15.15209 -15.00131 -14.48937 -14.36529 -14.09117 -13.76968 -13.65749 -13.45382 -13.37444 -12.93322 -12.75093 -12.69185 -12.42148 -12.22066 -12.00268 -11.88710 -11.58466 -11.21704 -10.23336 -9.96885 -9.68202 -9.40408 -9.02762 -8.48250 -6.44021 -0.11465 0.47816 0.60873 1.15243 1.34197 1.39206 1.49629 1.69470 2.20536 2.32700 2.84351 3.42730 3.55331 3.95645 3.99230 4.16164 4.35797 4.41513 4.71528 4.77210 4.78679 4.87380 4.89412 4.93384 5.03535 5.12601 5.17627 5.24597 5.38953 5.43153 5.53019 5.71632 5.72669 6.11476 6.13554 6.50388 6.83140 7.63497 8.40414 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.020571 B = 0.007064 C = 0.005661 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1360.822787 B = 3962.572440 C = 4945.035989 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.099 4.099 3 C -0.105 4.105 4 C -0.112 4.112 5 C -0.083 4.083 6 C -0.115 4.115 7 C -0.035 4.035 8 C 0.083 3.917 9 N -0.431 5.431 10 C 0.194 3.806 11 C -0.472 4.472 12 H 0.084 0.916 13 C 0.025 3.975 14 N -0.785 5.785 15 Si 0.992 3.008 16 H -0.261 1.261 17 H -0.266 1.266 18 H -0.257 1.257 19 C -0.489 4.489 20 S 0.051 5.949 21 C -0.098 4.098 22 H 0.082 0.918 23 H 0.091 0.909 24 H 0.054 0.946 25 H 0.162 0.838 26 H 0.162 0.838 27 H 0.080 0.920 28 H 0.041 0.959 29 H 0.097 0.903 30 H 0.280 0.720 31 H 0.141 0.859 32 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.121 12.240 3.182 13.027 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.099 4.099 3 C -0.123 4.123 4 C -0.130 4.130 5 C -0.086 4.086 6 C -0.172 4.172 7 C -0.039 4.039 8 C -0.197 4.197 9 N -0.146 5.146 10 C 0.070 3.930 11 C -0.506 4.506 12 H 0.102 0.898 13 C -0.194 4.194 14 N -0.408 5.408 15 Si 0.812 3.188 16 H -0.186 1.186 17 H -0.190 1.190 18 H -0.180 1.180 19 C -0.628 4.628 20 S 0.303 5.697 21 C -0.119 4.119 22 H 0.101 0.899 23 H 0.110 0.890 24 H 0.073 0.927 25 H 0.180 0.820 26 H 0.180 0.820 27 H 0.099 0.901 28 H 0.060 0.940 29 H 0.116 0.884 30 H 0.090 0.910 31 H 0.159 0.841 32 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -3.146 12.764 3.459 13.594 hybrid contribution 0.114 -2.302 -0.922 2.482 sum -3.032 10.462 2.537 11.185 Atomic orbital electron populations 1.20801 0.89064 1.03386 1.03200 1.20135 0.97651 0.92151 1.00012 1.21497 0.94143 0.97974 0.98713 1.21269 0.94471 0.97184 1.00056 1.20204 0.96970 0.91813 0.99581 1.20903 0.90303 1.03118 1.02865 1.18082 0.92970 0.88885 1.03958 1.26510 0.98501 0.97764 0.96927 1.67570 1.25345 0.99686 1.21973 1.18349 0.89002 0.92648 0.93022 1.19312 1.16349 0.99263 1.15699 0.89769 1.26952 0.93615 1.01048 0.97762 1.70237 1.13238 1.30950 1.26411 0.85063 0.79732 0.76826 0.77175 1.18570 1.19013 1.18036 1.25642 1.17091 1.04866 1.15208 1.82071 1.35538 1.10813 1.41237 1.21085 0.92497 0.98387 0.99934 0.89948 0.89048 0.92715 0.82004 0.82014 0.90132 0.94039 0.88405 0.90996 0.84132 0.88522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.39 10.01 71.24 0.71 -1.67 16 2 C -0.10 -2.91 5.87 -19.90 -0.12 -3.03 16 3 C -0.10 -2.48 9.69 22.33 0.22 -2.27 16 4 C -0.11 -2.82 9.67 22.23 0.21 -2.60 16 5 C -0.08 -2.79 5.91 -19.60 -0.12 -2.90 16 6 C -0.12 -3.47 8.49 71.23 0.60 -2.86 16 7 C -0.03 -1.47 5.85 -20.09 -0.12 -1.59 16 8 C 0.08 4.14 6.03 87.51 0.53 4.67 16 9 N -0.43 -25.25 8.46 -182.93 -1.55 -26.79 16 10 C 0.19 11.62 6.45 39.66 0.26 11.88 16 11 C -0.47 -27.74 9.23 23.33 0.22 -27.53 16 12 H 0.08 4.70 7.84 -2.91 -0.02 4.68 16 13 C 0.03 1.37 5.49 85.16 0.47 1.84 16 14 N -0.78 -44.80 11.69 21.78 0.25 -44.55 16 15 Si 0.99 40.64 29.56 68.60 2.03 42.67 16 16 H -0.26 -10.25 7.11 99.48 0.71 -9.54 16 17 H -0.27 -10.29 7.11 99.48 0.71 -9.58 16 18 H -0.26 -10.15 7.11 99.48 0.71 -9.45 16 19 C -0.49 -26.54 10.99 67.76 0.74 -25.79 16 20 S 0.05 2.34 20.89 -56.49 -1.18 1.16 16 21 C -0.10 -3.85 9.44 22.53 0.21 -3.64 16 22 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 23 H 0.09 1.51 8.09 -2.39 -0.02 1.49 16 24 H 0.05 1.34 8.08 -2.39 -0.02 1.32 16 25 H 0.16 2.45 8.06 -2.91 -0.02 2.43 16 26 H 0.16 2.74 8.06 -2.91 -0.02 2.72 16 27 H 0.08 2.26 7.84 -2.38 -0.02 2.24 16 28 H 0.04 1.52 6.77 -2.39 -0.02 1.50 16 29 H 0.10 2.20 8.05 -2.39 -0.02 2.18 16 30 H 0.28 14.46 8.30 -92.71 -0.77 13.69 16 31 H 0.14 7.27 8.06 -2.91 -0.02 7.25 16 32 H 0.10 4.27 8.06 -2.91 -0.02 4.25 16 Total: -1.00 -70.78 290.37 4.50 -66.28 By element: Atomic # 1 Polarization: 15.60 SS G_CDS: 1.12 Total: 16.73 kcal Atomic # 6 Polarization: -59.32 SS G_CDS: 3.82 Total: -55.50 kcal Atomic # 7 Polarization: -70.05 SS G_CDS: -1.29 Total: -71.34 kcal Atomic # 14 Polarization: 40.64 SS G_CDS: 2.03 Total: 42.67 kcal Atomic # 16 Polarization: 2.34 SS G_CDS: -1.18 Total: 1.16 kcal Total: -70.78 4.50 -66.28 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222309095.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.401 kcal (2) G-P(sol) polarization free energy of solvation -70.783 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.499 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.284 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.117 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.35 seconds