Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 N 1.46492 * 109.47363 * 59.99700 * 4 2 1 6 6 C 1.36935 * 120.00292 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00080 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99860 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00176 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47036 * 89.99644 * 10 8 6 12 12 H 1.48505 * 109.47305 * 209.99452 * 10 8 6 13 13 H 1.48500 * 109.46989 * 329.99747 * 10 8 6 14 14 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 15 15 C 1.33349 * 125.19069 * 300.00153 * 14 2 1 16 16 C 1.38464 * 114.93200 * 179.97438 * 15 14 2 17 17 C 1.33506 * 114.88794 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 125.21130 * 179.97438 * 17 16 15 19 19 S 1.75877 * 125.18883 * 119.69372 * 14 2 1 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 0.97009 * 120.00045 * 0.02562 * 5 4 2 29 29 H 0.97006 * 119.99674 * 180.02562 * 9 8 6 30 30 H 1.07997 * 122.53132 * 359.97438 * 15 14 2 31 31 H 1.08008 * 122.56191 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.5517 -0.0306 -2.4454 6 6 1.8829 -0.4980 -3.6892 7 1 2.5038 -1.3761 -3.7883 8 6 1.4197 0.1561 -4.8225 9 7 1.7377 -0.2935 -6.0180 10 14 0.3451 1.6744 -4.6510 11 1 1.2032 2.8856 -4.6058 12 1 -0.5755 1.7632 -5.8130 13 1 -0.4466 1.5815 -3.3981 14 6 2.0324 -0.7104 1.2304 15 6 1.7748 -0.3462 2.4871 16 6 2.3449 -1.1532 3.4571 17 6 3.0663 -2.1733 2.9866 18 17 3.8959 -3.3462 3.9611 19 16 3.0416 -2.1508 1.2280 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 3.1300 -0.7208 -1.2496 27 1 1.6767 -1.7489 -1.2494 28 1 0.9942 0.7583 -2.3564 29 1 1.4143 0.1638 -6.8100 30 1 1.1676 0.5132 2.7298 31 1 2.2164 -0.9710 4.5139 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258718422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = 31.339833 kcal Electronic energy + Delta-G solvation = -15018.657591 eV Core-core repulsion = 12452.878844 eV Total energy + Delta-G solvation = -2565.778747 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -38.82414 -37.15323 -36.15730 -33.41345 -30.88346 -28.32505 -27.04826 -26.28786 -24.18158 -22.38930 -19.88162 -18.96730 -18.10799 -16.75886 -15.77588 -14.63709 -14.38632 -14.36925 -13.87709 -13.52899 -13.33499 -13.01410 -12.61824 -12.46115 -12.37817 -11.65691 -11.62462 -11.44030 -11.40871 -10.95208 -10.77873 -10.75125 -10.67587 -10.38011 -10.04224 -9.59373 -8.95417 -8.56176 -8.47675 -7.26815 -5.79120 -3.15187 0.82280 1.11381 1.88129 2.20562 2.59229 3.33499 3.35917 3.42603 4.56010 4.59853 5.03072 5.18763 5.21547 5.34066 5.50598 5.52986 5.59466 5.83044 5.83907 5.99669 6.03212 6.06280 6.22538 6.37328 6.39849 6.45725 6.55514 6.62167 7.96305 8.39331 9.17690 9.89593 10.09217 11.39255 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.005012 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.295544 B = 5585.168292 C = 6079.398402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C -0.010 4.010 3 C -0.131 4.131 4 C 0.161 3.839 5 N -0.749 5.749 6 C -0.245 4.245 7 H 0.090 0.910 8 C 0.007 3.993 9 N -0.933 5.933 10 Si 0.881 3.119 11 H -0.283 1.283 12 H -0.290 1.290 13 H -0.277 1.277 14 C -0.135 4.135 15 C -0.146 4.146 16 C -0.114 4.114 17 C -0.170 4.170 18 Cl -0.026 7.026 19 S 0.172 5.828 20 H 0.052 0.948 21 H 0.059 0.941 22 H 0.068 0.932 23 H 0.053 0.947 24 H 0.059 0.941 25 H 0.067 0.933 26 H 0.032 0.968 27 H 0.031 0.969 28 H 0.363 0.637 29 H 0.260 0.740 30 H 0.144 0.856 31 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.493 -0.698 20.431 20.448 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.013 4.013 3 C -0.190 4.190 4 C 0.033 3.967 5 N -0.396 5.396 6 C -0.375 4.375 7 H 0.108 0.892 8 C -0.189 4.189 9 N -0.581 5.581 10 Si 0.711 3.289 11 H -0.210 1.210 12 H -0.216 1.216 13 H -0.203 1.203 14 C -0.254 4.254 15 C -0.175 4.175 16 C -0.146 4.146 17 C -0.313 4.313 18 Cl 0.002 6.998 19 S 0.437 5.563 20 H 0.072 0.928 21 H 0.078 0.922 22 H 0.087 0.913 23 H 0.072 0.928 24 H 0.078 0.922 25 H 0.086 0.914 26 H 0.049 0.951 27 H 0.049 0.951 28 H 0.197 0.803 29 H 0.070 0.930 30 H 0.162 0.838 31 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.327 -1.899 19.227 19.366 hybrid contribution -1.266 1.782 1.245 2.516 sum 0.061 -0.117 20.471 20.472 Atomic orbital electron populations 1.21849 0.92770 1.02502 1.01909 1.19468 0.96233 0.95286 0.90297 1.21837 1.01552 0.93737 1.01842 1.20725 0.96796 0.94548 0.84623 1.42670 1.61977 1.33123 1.01830 1.19046 1.26584 1.10342 0.81507 0.89173 1.24648 1.00374 0.98858 0.95051 1.69701 1.49696 1.41882 0.96775 0.86611 0.80931 0.84367 0.76987 1.20951 1.21607 1.20316 1.24757 1.02627 0.99264 0.98743 1.19817 1.04413 1.02550 0.90720 1.20098 0.98657 0.94459 1.01434 1.25359 1.08622 1.00204 0.97157 1.98345 1.76660 1.56041 1.68739 1.84778 1.49094 1.25443 0.97017 0.92847 0.92232 0.91285 0.92816 0.92176 0.91410 0.95067 0.95130 0.80315 0.93012 0.83797 0.83935 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -1.90 8.16 37.16 0.30 -1.60 16 2 C -0.01 -0.16 0.67 -155.66 -0.10 -0.26 16 3 C -0.13 -1.87 8.16 37.16 0.30 -1.57 16 4 C 0.16 3.09 4.23 -4.04 -0.02 3.07 16 5 N -0.75 -17.40 4.81 -59.91 -0.29 -17.69 16 6 C -0.25 -6.87 10.47 -15.06 -0.16 -7.03 16 7 H 0.09 2.72 8.06 -52.49 -0.42 2.30 16 8 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 9 N -0.93 -29.13 13.97 55.49 0.78 -28.35 16 10 Si 0.88 21.68 27.73 -169.99 -4.71 16.97 16 11 H -0.28 -6.89 7.11 56.52 0.40 -6.49 16 12 H -0.29 -7.25 7.11 56.52 0.40 -6.84 16 13 H -0.28 -6.32 6.52 56.52 0.37 -5.95 16 14 C -0.14 -1.83 5.12 -36.02 -0.18 -2.01 16 15 C -0.15 -1.69 9.30 -41.21 -0.38 -2.07 16 16 C -0.11 -1.27 10.13 -41.15 -0.42 -1.68 16 17 C -0.17 -2.07 7.10 29.08 0.21 -1.86 16 18 Cl -0.03 -0.29 29.29 -51.86 -1.52 -1.81 16 19 S 0.17 2.32 21.83 -107.50 -2.35 -0.03 16 20 H 0.05 0.63 7.93 -51.93 -0.41 0.22 16 21 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 22 H 0.07 1.10 6.86 -51.93 -0.36 0.75 16 23 H 0.05 0.63 7.93 -51.93 -0.41 0.22 16 24 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 25 H 0.07 1.06 6.86 -51.93 -0.36 0.70 16 26 H 0.03 0.62 7.97 -51.93 -0.41 0.21 16 27 H 0.03 0.61 7.95 -51.93 -0.41 0.20 16 28 H 0.36 8.10 3.22 -40.82 -0.13 7.97 16 29 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 30 H 0.14 1.41 8.01 -52.49 -0.42 0.99 16 31 H 0.14 1.28 8.06 -52.48 -0.42 0.85 16 LS Contribution 284.67 15.07 4.29 4.29 Total: -1.00 -30.06 284.67 -8.12 -38.19 By element: Atomic # 1 Polarization: 7.13 SS G_CDS: -3.77 Total: 3.35 kcal Atomic # 6 Polarization: -14.37 SS G_CDS: -0.55 Total: -14.92 kcal Atomic # 7 Polarization: -46.53 SS G_CDS: 0.49 Total: -46.04 kcal Atomic # 14 Polarization: 21.68 SS G_CDS: -4.71 Total: 16.97 kcal Atomic # 16 Polarization: 2.32 SS G_CDS: -2.35 Total: -0.03 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -1.52 Total: -1.81 kcal Total LS contribution 4.29 Total: 4.29 kcal Total: -30.06 -8.12 -38.19 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258718422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.526 kcal (2) G-P(sol) polarization free energy of solvation -30.062 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.125 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.187 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.340 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds