Wall clock time and date at job start Mon Mar 30 2020 06:40:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.52999 * 109.47317 * 2 1 4 4 C 1.53006 * 109.47127 * 240.00489 * 2 1 3 5 5 N 1.46492 * 109.47363 * 59.99700 * 4 2 1 6 6 C 1.36935 * 120.00292 * 179.97438 * 5 4 2 7 7 H 1.07998 * 119.99793 * 0.02562 * 6 5 4 8 8 C 1.38809 * 120.00080 * 179.97438 * 6 5 4 9 9 N 1.31622 * 119.99860 * 180.02562 * 8 6 5 10 10 Si 1.86800 * 120.00176 * 0.02562 * 8 6 5 11 11 H 1.48501 * 109.47036 * 89.99644 * 10 8 6 12 12 H 1.48505 * 109.47305 * 209.99452 * 10 8 6 13 13 H 1.48500 * 109.46989 * 329.99747 * 10 8 6 14 14 C 1.50697 * 109.47466 * 120.00132 * 2 1 3 15 15 C 1.33349 * 125.19069 * 300.00153 * 14 2 1 16 16 C 1.38464 * 114.93200 * 179.97438 * 15 14 2 17 17 C 1.33506 * 114.88794 * 0.02562 * 16 15 14 18 18 Cl 1.73598 * 125.21130 * 179.97438 * 17 16 15 19 19 S 1.75877 * 125.18883 * 119.69372 * 14 2 1 20 20 H 1.09002 * 109.47153 * 299.99641 * 1 2 3 21 21 H 1.09001 * 109.46832 * 179.97438 * 1 2 3 22 22 H 1.09004 * 109.47261 * 59.99813 * 1 2 3 23 23 H 1.09002 * 109.46716 * 60.00091 * 3 2 1 24 24 H 1.09000 * 109.47486 * 180.02562 * 3 2 1 25 25 H 1.09001 * 109.47362 * 300.00732 * 3 2 1 26 26 H 1.09000 * 109.47050 * 179.97438 * 4 2 1 27 27 H 1.09001 * 109.47002 * 299.99574 * 4 2 1 28 28 H 0.97009 * 120.00045 * 0.02562 * 5 4 2 29 29 H 0.97006 * 119.99674 * 180.02562 * 9 8 6 30 30 H 1.07997 * 122.53132 * 359.97438 * 15 14 2 31 31 H 1.08008 * 122.56191 * 179.97438 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7212 -1.2494 5 7 1.5517 -0.0306 -2.4454 6 6 1.8829 -0.4980 -3.6892 7 1 2.5038 -1.3761 -3.7883 8 6 1.4197 0.1561 -4.8225 9 7 1.7377 -0.2935 -6.0180 10 14 0.3451 1.6744 -4.6510 11 1 1.2032 2.8856 -4.6058 12 1 -0.5755 1.7632 -5.8130 13 1 -0.4466 1.5815 -3.3981 14 6 2.0324 -0.7104 1.2304 15 6 1.7748 -0.3462 2.4871 16 6 2.3449 -1.1532 3.4571 17 6 3.0663 -2.1733 2.9866 18 17 3.8959 -3.3462 3.9611 19 16 3.0416 -2.1508 1.2280 20 1 -0.3633 0.5138 0.8900 21 1 -0.3633 -1.0277 -0.0005 22 1 -0.3634 0.5139 -0.8900 23 1 1.6767 1.9563 0.8900 24 1 3.1300 1.4425 -0.0005 25 1 1.6766 1.9564 -0.8899 26 1 3.1300 -0.7208 -1.2496 27 1 1.6767 -1.7489 -1.2494 28 1 0.9942 0.7583 -2.3564 29 1 1.4143 0.1638 -6.8100 30 1 1.1676 0.5132 2.7298 31 1 2.2164 -0.9710 4.5139 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258718422.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:40:56 Heat of formation + Delta-G solvation = 13.925640 kcal Electronic energy + Delta-G solvation = -15019.412727 eV Core-core repulsion = 12452.878844 eV Total energy + Delta-G solvation = -2566.533883 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.93700 -38.21508 -37.28259 -35.22711 -32.89183 -29.35316 -28.15448 -27.90023 -25.43983 -24.06979 -21.17245 -20.02339 -19.92778 -18.01105 -16.90910 -16.37963 -15.96615 -15.63216 -15.31282 -14.62110 -14.59443 -14.48003 -13.93707 -13.65667 -13.63269 -13.23033 -12.92500 -12.71586 -12.66524 -12.44461 -12.15401 -12.02520 -11.92880 -11.71670 -11.68057 -11.34892 -11.02017 -9.58476 -9.46273 -9.30164 -8.03602 -5.38139 -0.13173 0.14729 0.92211 1.26864 1.36514 1.41387 1.48470 1.69963 2.47769 3.27460 3.37808 3.78999 3.93914 4.00843 4.22332 4.40501 4.53879 4.75534 4.78549 4.89008 4.94656 4.98218 5.01363 5.05751 5.25610 5.34144 5.39891 5.44105 5.73597 6.19393 7.06063 7.79526 8.01642 9.18032 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.040848 B = 0.005012 C = 0.004605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 685.295544 B = 5585.168292 C = 6079.398402 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.000 4.000 3 C -0.131 4.131 4 C 0.160 3.840 5 N -0.748 5.748 6 C -0.239 4.239 7 H 0.052 0.948 8 C -0.061 4.061 9 N -0.984 5.984 10 Si 0.952 3.048 11 H -0.274 1.274 12 H -0.294 1.294 13 H -0.246 1.246 14 C -0.150 4.150 15 C -0.126 4.126 16 C -0.107 4.107 17 C -0.170 4.170 18 Cl -0.018 7.018 19 S 0.117 5.883 20 H 0.087 0.913 21 H 0.052 0.948 22 H 0.052 0.948 23 H 0.088 0.912 24 H 0.053 0.947 25 H 0.052 0.948 26 H 0.021 0.979 27 H 0.020 0.980 28 H 0.370 0.630 29 H 0.259 0.741 30 H 0.174 0.826 31 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.860 1.184 23.521 23.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.003 4.003 3 C -0.189 4.189 4 C 0.033 3.967 5 N -0.395 5.395 6 C -0.370 4.370 7 H 0.070 0.930 8 C -0.252 4.252 9 N -0.634 5.634 10 Si 0.778 3.222 11 H -0.200 1.200 12 H -0.221 1.221 13 H -0.170 1.170 14 C -0.269 4.269 15 C -0.156 4.156 16 C -0.139 4.139 17 C -0.313 4.313 18 Cl 0.010 6.990 19 S 0.382 5.618 20 H 0.106 0.894 21 H 0.071 0.929 22 H 0.071 0.929 23 H 0.106 0.894 24 H 0.072 0.928 25 H 0.071 0.929 26 H 0.039 0.961 27 H 0.038 0.962 28 H 0.206 0.794 29 H 0.068 0.932 30 H 0.191 0.809 31 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -0.024 -0.022 22.374 22.374 hybrid contribution -0.751 1.071 0.367 1.358 sum -0.774 1.048 22.741 22.778 Atomic orbital electron populations 1.21854 0.91904 1.02380 1.02759 1.19281 0.96839 0.95480 0.88662 1.21853 1.01214 0.93052 1.02800 1.20817 0.96126 0.94369 0.85405 1.42596 1.62038 1.33519 1.01342 1.18997 1.25254 1.08918 0.83790 0.93016 1.25512 1.02504 1.02768 0.94448 1.69895 1.51720 1.43976 0.97797 0.85469 0.79031 0.79741 0.77973 1.20022 1.22104 1.17044 1.24532 1.04012 0.99437 0.98874 1.20130 1.03169 1.02678 0.89583 1.20434 0.97299 0.93362 1.02808 1.25406 1.09085 1.00894 0.95962 1.98350 1.76571 1.55894 1.68137 1.84998 1.50475 1.26895 0.99477 0.89378 0.92912 0.92941 0.89362 0.92828 0.92860 0.96137 0.96232 0.79432 0.93245 0.80886 0.81058 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.39 8.16 71.98 0.59 -2.80 16 2 C 0.00 -0.01 0.67 -52.93 -0.04 -0.04 16 3 C -0.13 -3.36 8.16 71.98 0.59 -2.78 16 4 C 0.16 6.19 4.23 86.38 0.37 6.55 16 5 N -0.75 -34.75 4.81 -343.46 -1.65 -36.41 16 6 C -0.24 -13.78 10.47 84.03 0.88 -12.90 16 7 H 0.05 3.31 8.06 -2.91 -0.02 3.28 16 8 C -0.06 -3.59 5.50 84.86 0.47 -3.12 16 9 N -0.98 -63.37 13.97 21.65 0.30 -63.07 16 10 Si 0.95 44.58 27.73 68.60 1.90 46.48 16 11 H -0.27 -12.44 7.11 99.48 0.71 -11.73 16 12 H -0.29 -13.98 7.11 99.48 0.71 -13.27 16 13 H -0.25 -10.17 6.52 99.48 0.65 -9.52 16 14 C -0.15 -3.72 5.12 24.58 0.13 -3.60 16 15 C -0.13 -2.40 9.30 21.22 0.20 -2.20 16 16 C -0.11 -1.97 10.13 21.25 0.22 -1.75 16 17 C -0.17 -3.78 7.10 66.75 0.47 -3.31 16 18 Cl -0.02 -0.37 29.29 -2.72 -0.08 -0.45 16 19 S 0.12 3.12 21.83 -56.49 -1.23 1.89 16 20 H 0.09 1.66 7.93 -2.39 -0.02 1.64 16 21 H 0.05 1.42 8.14 -2.39 -0.02 1.40 16 22 H 0.05 1.53 6.86 -2.38 -0.02 1.51 16 23 H 0.09 1.65 7.93 -2.39 -0.02 1.63 16 24 H 0.05 1.43 8.14 -2.39 -0.02 1.41 16 25 H 0.05 1.52 6.86 -2.39 -0.02 1.50 16 26 H 0.02 0.84 7.97 -2.39 -0.02 0.82 16 27 H 0.02 0.80 7.95 -2.39 -0.02 0.79 16 28 H 0.37 16.01 3.22 -92.70 -0.30 15.71 16 29 H 0.26 15.81 8.31 -92.70 -0.77 15.04 16 30 H 0.17 2.31 8.01 -2.91 -0.02 2.29 16 31 H 0.17 2.21 8.06 -2.91 -0.02 2.18 16 Total: -1.00 -66.70 284.67 3.88 -62.82 By element: Atomic # 1 Polarization: 13.91 SS G_CDS: 0.78 Total: 14.68 kcal Atomic # 6 Polarization: -29.81 SS G_CDS: 3.86 Total: -25.95 kcal Atomic # 7 Polarization: -98.12 SS G_CDS: -1.35 Total: -99.47 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 1.90 Total: 46.48 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.23 Total: 1.89 kcal Atomic # 17 Polarization: -0.37 SS G_CDS: -0.08 Total: -0.45 kcal Total: -66.70 3.88 -62.82 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258718422.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.741 kcal (2) G-P(sol) polarization free energy of solvation -66.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.045 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.880 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.816 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.926 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds