Wall clock time and date at job start Mon Mar 30 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29781 * 122.37583 * 2 1 4 4 C 1.31887 * 117.28504 * 180.30941 * 3 2 1 5 5 C 1.39576 * 125.27283 * 179.73923 * 4 3 2 6 6 H 1.08002 * 119.99960 * 179.97438 * 5 4 3 7 7 C 1.40248 * 120.00071 * 359.95259 * 5 4 3 8 8 N 1.30697 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46724 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46980 * 119.99933 * 9 7 5 12 12 H 1.48498 * 109.47070 * 240.00064 * 9 7 5 13 13 S 1.76108 * 109.45724 * 359.69743 * 4 3 2 14 14 C 1.37852 * 122.38186 * 179.75272 * 2 1 3 15 15 C 1.47341 * 125.98877 * 359.97438 * 14 2 1 16 16 C 1.39898 * 120.17475 * 312.47071 * 15 14 2 17 17 C 1.37854 * 119.82543 * 179.97438 * 16 15 14 18 18 C 1.38443 * 120.17066 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.82337 * 180.02562 * 18 17 16 20 20 C 1.38445 * 120.35237 * 0.04523 * 18 17 16 21 21 C 1.37851 * 120.17158 * 359.95548 * 20 18 17 22 22 H 1.09001 * 109.47424 * 264.98069 * 1 2 3 23 23 H 1.09004 * 109.47354 * 24.98255 * 1 2 3 24 24 H 1.09001 * 109.47291 * 144.98366 * 1 2 3 25 25 H 0.96998 * 120.00343 * 180.02562 * 8 7 5 26 26 H 1.08006 * 120.08404 * 359.70212 * 16 15 14 27 27 H 1.07999 * 119.91376 * 180.02562 * 17 16 15 28 28 H 1.08999 * 109.46625 * 270.02590 * 19 18 17 29 29 H 1.08999 * 109.47080 * 30.02223 * 19 18 17 30 30 H 1.09001 * 109.46882 * 150.02377 * 19 18 17 31 31 H 1.07997 * 119.90794 * 179.97438 * 20 18 17 32 32 H 1.07998 * 120.09047 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2019 1.0961 0.0000 4 6 3.5156 0.9791 -0.0063 5 6 4.4195 2.0426 -0.0126 6 1 5.4819 1.8483 -0.0171 7 6 3.9482 3.3635 -0.0134 8 7 2.6625 3.5986 -0.0078 9 14 5.1579 4.7868 -0.0225 10 1 6.5452 4.2572 -0.0272 11 1 4.9393 5.6145 -1.2358 12 1 4.9508 5.6202 1.1891 13 16 3.9526 -0.7269 -0.0045 14 6 2.2453 -1.1641 0.0050 15 6 1.7022 -2.5338 0.0115 16 6 0.6842 -2.8824 0.9055 17 6 0.1810 -4.1658 0.9050 18 6 0.6800 -5.1085 0.0224 19 6 0.1237 -6.5091 0.0282 20 6 1.6877 -4.7714 -0.8652 21 6 2.2013 -3.4923 -0.8769 22 1 -0.3634 -0.0899 1.0237 23 1 -0.3634 0.9315 -0.4340 24 1 -0.3634 -0.8416 -0.5897 25 1 2.3365 4.5122 -0.0088 26 1 0.2967 -2.1491 1.5974 27 1 -0.6052 -4.4363 1.5943 28 1 0.6943 -7.1237 0.7245 29 1 -0.9210 -6.4838 0.3379 30 1 0.1957 -6.9327 -0.9736 31 1 2.0719 -5.5126 -1.5503 32 1 2.9877 -3.2309 -1.5696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258727364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:04 Heat of formation + Delta-G solvation = 35.102350 kcal Electronic energy + Delta-G solvation = -15997.732733 eV Core-core repulsion = 13434.549990 eV Total energy + Delta-G solvation = -2563.182742 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -38.75878 -37.49781 -34.19276 -32.64963 -30.55056 -30.08825 -27.58991 -27.45736 -24.21718 -22.17284 -21.96548 -20.60631 -18.57359 -17.05460 -16.12760 -15.23298 -15.03646 -14.61979 -14.49642 -13.61251 -13.37952 -13.25431 -12.86928 -12.53287 -12.34712 -12.02590 -11.87533 -11.76835 -11.47077 -11.38824 -11.19567 -11.01480 -10.57010 -10.48004 -10.36431 -9.78694 -9.58091 -8.41844 -8.36149 -7.76178 -7.52873 -7.17796 -6.86800 -4.74898 1.65079 1.96715 2.47720 2.88092 2.94339 2.95585 3.24051 3.59035 3.70825 4.17880 4.49268 5.08011 5.24575 5.25968 5.48500 5.65006 5.74460 5.82724 5.84107 5.98558 6.09757 6.19260 6.25946 6.40680 6.57378 6.61130 6.67124 6.69251 7.04061 7.05680 7.06957 7.31347 7.56072 7.60774 7.81169 8.04769 8.39665 9.77758 9.91875 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.049398 B = 0.004861 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.687890 B = 5758.312027 C = 6172.369200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.074 4.074 2 C 0.167 3.833 3 N -0.538 5.538 4 C 0.240 3.760 5 C -0.364 4.364 6 H 0.099 0.901 7 C 0.065 3.935 8 N -0.690 5.690 9 Si 0.925 3.075 10 H -0.255 1.255 11 H -0.267 1.267 12 H -0.267 1.267 13 S -0.123 6.123 14 C -0.364 4.364 15 C 0.065 3.935 16 C -0.127 4.127 17 C -0.114 4.114 18 C -0.127 4.127 19 C -0.104 4.104 20 C -0.114 4.114 21 C -0.131 4.131 22 H 0.060 0.940 23 H 0.065 0.935 24 H 0.059 0.941 25 H 0.285 0.715 26 H 0.117 0.883 27 H 0.112 0.888 28 H 0.060 0.940 29 H 0.059 0.941 30 H 0.058 0.942 31 H 0.111 0.889 32 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.623 -7.062 0.055 7.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C 0.022 3.978 3 N -0.257 5.257 4 C -0.007 4.007 5 C -0.406 4.406 6 H 0.117 0.883 7 C -0.167 4.167 8 N -0.310 5.310 9 Si 0.747 3.253 10 H -0.178 1.178 11 H -0.192 1.192 12 H -0.192 1.192 13 S 0.135 5.865 14 C -0.486 4.486 15 C 0.062 3.938 16 C -0.147 4.147 17 C -0.133 4.133 18 C -0.128 4.128 19 C -0.161 4.161 20 C -0.132 4.132 21 C -0.150 4.150 22 H 0.079 0.921 23 H 0.084 0.916 24 H 0.077 0.923 25 H 0.097 0.903 26 H 0.135 0.865 27 H 0.130 0.870 28 H 0.079 0.921 29 H 0.078 0.922 30 H 0.077 0.923 31 H 0.129 0.871 32 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -1.964 -6.931 0.050 7.204 hybrid contribution -0.313 0.553 -0.009 0.636 sum -2.277 -6.377 0.041 6.772 Atomic orbital electron populations 1.20297 0.90351 1.01668 1.01051 1.20659 0.96094 0.86941 0.94108 1.66853 1.03158 1.26025 1.29619 1.23838 0.91554 0.90744 0.94574 1.19221 0.94305 0.89021 1.38075 0.88322 1.26211 0.96239 1.00407 0.93802 1.70011 1.14192 1.22852 1.23986 0.85969 0.80775 0.79463 0.79101 1.17819 1.19224 1.19229 1.84117 1.09651 1.10514 1.82208 1.22812 0.92562 0.94590 1.38656 1.17951 0.92889 0.90712 0.92211 1.21278 0.98598 0.95775 0.99000 1.20802 1.00224 0.93295 0.98942 1.19737 0.98768 0.95808 0.98489 1.20670 1.00258 0.93511 1.01670 1.20796 0.97187 0.96158 0.99094 1.21343 1.01247 0.93185 0.99255 0.92095 0.91638 0.92250 0.90340 0.86533 0.87014 0.92082 0.92240 0.92273 0.87101 0.86710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -1.51 8.95 36.00 0.32 -1.19 16 2 C 0.17 4.13 6.78 -83.60 -0.57 3.57 16 3 N -0.54 -14.70 8.56 -8.84 -0.08 -14.78 16 4 C 0.24 6.44 7.06 -17.03 -0.12 6.32 16 5 C -0.36 -9.15 9.37 -38.33 -0.36 -9.51 16 6 H 0.10 2.28 7.85 -52.49 -0.41 1.87 16 7 C 0.07 1.53 5.50 -17.28 -0.10 1.43 16 8 N -0.69 -17.13 11.84 55.56 0.66 -16.47 16 9 Si 0.92 16.85 29.56 -169.99 -5.03 11.82 16 10 H -0.25 -4.54 7.11 56.52 0.40 -4.14 16 11 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 12 H -0.27 -4.79 7.11 56.52 0.40 -4.39 16 13 S -0.12 -3.02 23.34 -107.50 -2.51 -5.53 16 14 C -0.36 -8.71 6.06 -36.02 -0.22 -8.93 16 15 C 0.07 1.36 5.36 -104.95 -0.56 0.80 16 16 C -0.13 -2.34 8.63 -39.10 -0.34 -2.68 16 17 C -0.11 -1.82 9.68 -39.65 -0.38 -2.20 16 18 C -0.13 -1.94 5.89 -104.47 -0.62 -2.56 16 19 C -0.10 -1.19 10.00 36.01 0.36 -0.83 16 20 C -0.11 -1.86 9.68 -39.65 -0.38 -2.25 16 21 C -0.13 -2.51 9.77 -39.10 -0.38 -2.90 16 22 H 0.06 1.13 7.71 -51.93 -0.40 0.72 16 23 H 0.06 1.32 8.14 -51.93 -0.42 0.90 16 24 H 0.06 1.11 7.46 -51.93 -0.39 0.72 16 25 H 0.29 6.25 8.29 -40.82 -0.34 5.91 16 26 H 0.12 2.10 7.18 -52.48 -0.38 1.72 16 27 H 0.11 1.48 8.06 -52.49 -0.42 1.05 16 28 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 29 H 0.06 0.60 8.08 -51.93 -0.42 0.19 16 30 H 0.06 0.61 8.08 -51.93 -0.42 0.19 16 31 H 0.11 1.52 8.06 -52.49 -0.42 1.10 16 32 H 0.11 2.22 8.06 -52.49 -0.42 1.79 16 LS Contribution 292.47 15.07 4.41 4.41 Total: -1.00 -28.44 292.47 -9.55 -37.99 By element: Atomic # 1 Polarization: 7.14 SS G_CDS: -3.66 Total: 3.48 kcal Atomic # 6 Polarization: -17.58 SS G_CDS: -3.34 Total: -20.92 kcal Atomic # 7 Polarization: -31.83 SS G_CDS: 0.58 Total: -31.25 kcal Atomic # 14 Polarization: 16.85 SS G_CDS: -5.03 Total: 11.82 kcal Atomic # 16 Polarization: -3.02 SS G_CDS: -2.51 Total: -5.53 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -28.44 -9.55 -37.99 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.088 kcal (2) G-P(sol) polarization free energy of solvation -28.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 44.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.551 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.986 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.102 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds