Wall clock time and date at job start Mon Mar 30 2020 07:08:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50697 * 1 3 3 N 1.29781 * 122.37583 * 2 1 4 4 C 1.31887 * 117.28504 * 180.30941 * 3 2 1 5 5 C 1.39576 * 125.27283 * 179.73923 * 4 3 2 6 6 H 1.08002 * 119.99960 * 179.97438 * 5 4 3 7 7 C 1.40248 * 120.00071 * 359.95259 * 5 4 3 8 8 N 1.30697 * 120.00074 * 0.02562 * 7 5 4 9 9 Si 1.86802 * 120.00179 * 180.02562 * 7 5 4 10 10 H 1.48500 * 109.46724 * 359.97438 * 9 7 5 11 11 H 1.48494 * 109.46980 * 119.99933 * 9 7 5 12 12 H 1.48498 * 109.47070 * 240.00064 * 9 7 5 13 13 S 1.76108 * 109.45724 * 359.69743 * 4 3 2 14 14 C 1.37852 * 122.38186 * 179.75272 * 2 1 3 15 15 C 1.47341 * 125.98877 * 359.97438 * 14 2 1 16 16 C 1.39898 * 120.17475 * 312.47071 * 15 14 2 17 17 C 1.37854 * 119.82543 * 179.97438 * 16 15 14 18 18 C 1.38443 * 120.17066 * 359.97438 * 17 16 15 19 19 C 1.50708 * 119.82337 * 180.02562 * 18 17 16 20 20 C 1.38445 * 120.35237 * 0.04523 * 18 17 16 21 21 C 1.37851 * 120.17158 * 359.95548 * 20 18 17 22 22 H 1.09001 * 109.47424 * 264.98069 * 1 2 3 23 23 H 1.09004 * 109.47354 * 24.98255 * 1 2 3 24 24 H 1.09001 * 109.47291 * 144.98366 * 1 2 3 25 25 H 0.96998 * 120.00343 * 180.02562 * 8 7 5 26 26 H 1.08006 * 120.08404 * 359.70212 * 16 15 14 27 27 H 1.07999 * 119.91376 * 180.02562 * 17 16 15 28 28 H 1.08999 * 109.46625 * 270.02590 * 19 18 17 29 29 H 1.08999 * 109.47080 * 30.02223 * 19 18 17 30 30 H 1.09001 * 109.46882 * 150.02377 * 19 18 17 31 31 H 1.07997 * 119.90794 * 179.97438 * 20 18 17 32 32 H 1.07998 * 120.09047 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2019 1.0961 0.0000 4 6 3.5156 0.9791 -0.0063 5 6 4.4195 2.0426 -0.0126 6 1 5.4819 1.8483 -0.0171 7 6 3.9482 3.3635 -0.0134 8 7 2.6625 3.5986 -0.0078 9 14 5.1579 4.7868 -0.0225 10 1 6.5452 4.2572 -0.0272 11 1 4.9393 5.6145 -1.2358 12 1 4.9508 5.6202 1.1891 13 16 3.9526 -0.7269 -0.0045 14 6 2.2453 -1.1641 0.0050 15 6 1.7022 -2.5338 0.0115 16 6 0.6842 -2.8824 0.9055 17 6 0.1810 -4.1658 0.9050 18 6 0.6800 -5.1085 0.0224 19 6 0.1237 -6.5091 0.0282 20 6 1.6877 -4.7714 -0.8652 21 6 2.2013 -3.4923 -0.8769 22 1 -0.3634 -0.0899 1.0237 23 1 -0.3634 0.9315 -0.4340 24 1 -0.3634 -0.8416 -0.5897 25 1 2.3365 4.5122 -0.0088 26 1 0.2967 -2.1491 1.5974 27 1 -0.6052 -4.4363 1.5943 28 1 0.6943 -7.1237 0.7245 29 1 -0.9210 -6.4838 0.3379 30 1 0.1957 -6.9327 -0.9736 31 1 2.0719 -5.5126 -1.5503 32 1 2.9877 -3.2309 -1.5696 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258727364.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:04 Heat of formation + Delta-G solvation = 20.648505 kcal Electronic energy + Delta-G solvation = -15998.359499 eV Core-core repulsion = 13434.549990 eV Total energy + Delta-G solvation = -2563.809508 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.22494 -39.24200 -35.95351 -34.06555 -32.06205 -31.61621 -29.26322 -28.97264 -25.70536 -23.99320 -23.35166 -22.01677 -20.38004 -18.76092 -17.94562 -16.84118 -16.59919 -16.02079 -15.89336 -15.14685 -14.91690 -14.45218 -14.25652 -14.21535 -13.95573 -13.47550 -13.41712 -13.02691 -12.98258 -12.83583 -12.71411 -12.64033 -12.03054 -11.88721 -11.84128 -11.55895 -11.27722 -9.99554 -9.78038 -9.66206 -9.43736 -8.86737 -8.64136 -6.64139 0.09294 0.59800 0.79939 1.28388 1.42954 1.49589 1.60302 1.76704 2.14990 2.42758 3.02173 3.20515 4.05781 4.07409 4.12185 4.20967 4.34803 4.55748 4.64920 4.67369 4.81305 4.84254 4.92833 4.92867 4.98503 5.07069 5.22627 5.31827 5.39968 5.56456 5.73563 5.77640 5.92452 5.95954 6.21895 6.25120 6.52882 7.95771 8.14157 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.049398 B = 0.004861 C = 0.004535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 566.687890 B = 5758.312027 C = 6172.369200 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.061 4.061 2 C 0.133 3.867 3 N -0.571 5.571 4 C 0.207 3.793 5 C -0.390 4.390 6 H 0.108 0.892 7 C 0.024 3.976 8 N -0.732 5.732 9 Si 1.009 2.991 10 H -0.248 1.248 11 H -0.259 1.259 12 H -0.259 1.259 13 S -0.139 6.139 14 C -0.358 4.358 15 C 0.025 3.975 16 C -0.129 4.129 17 C -0.113 4.113 18 C -0.113 4.113 19 C -0.104 4.104 20 C -0.116 4.116 21 C -0.144 4.144 22 H 0.076 0.924 23 H 0.059 0.941 24 H 0.072 0.928 25 H 0.295 0.705 26 H 0.115 0.885 27 H 0.146 0.854 28 H 0.076 0.924 29 H 0.077 0.923 30 H 0.073 0.927 31 H 0.139 0.861 32 H 0.101 0.899 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.328 -8.726 0.307 9.344 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.010 4.010 3 N -0.291 5.291 4 C -0.040 4.040 5 C -0.432 4.432 6 H 0.126 0.874 7 C -0.204 4.204 8 N -0.352 5.352 9 Si 0.826 3.174 10 H -0.170 1.170 11 H -0.184 1.184 12 H -0.184 1.184 13 S 0.119 5.881 14 C -0.480 4.480 15 C 0.022 3.978 16 C -0.149 4.149 17 C -0.131 4.131 18 C -0.114 4.114 19 C -0.160 4.160 20 C -0.134 4.134 21 C -0.163 4.163 22 H 0.095 0.905 23 H 0.078 0.922 24 H 0.091 0.909 25 H 0.107 0.893 26 H 0.133 0.867 27 H 0.164 0.836 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.092 0.908 31 H 0.157 0.843 32 H 0.119 0.881 Dipole moment (debyes) X Y Z Total from point charges -2.700 -8.636 0.301 9.054 hybrid contribution -0.180 0.814 -0.081 0.838 sum -2.880 -7.822 0.220 8.338 Atomic orbital electron populations 1.20260 0.87704 1.01877 1.02221 1.21277 0.98013 0.86778 0.94916 1.66850 1.03628 1.27414 1.31203 1.24326 0.92137 0.91736 0.95826 1.19686 0.94710 0.89997 1.38795 0.87370 1.27284 0.98141 1.02546 0.92424 1.70075 1.16407 1.24246 1.24520 0.84765 0.78022 0.75205 0.79438 1.17047 1.18374 1.18357 1.83942 1.11426 1.10295 1.82480 1.23255 0.91589 0.96199 1.36981 1.18030 0.95149 0.89756 0.94833 1.21347 0.97932 0.97195 0.98469 1.21182 1.00513 0.92052 0.99354 1.20285 0.97032 0.97657 0.96400 1.20764 1.01287 0.90748 1.03207 1.21119 0.97182 0.95322 0.99757 1.21360 1.01376 0.94409 0.99155 0.90510 0.92186 0.90888 0.89334 0.86700 0.83643 0.90553 0.90429 0.90775 0.84287 0.88081 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -2.54 8.95 71.24 0.64 -1.90 16 2 C 0.13 6.82 6.78 42.77 0.29 7.11 16 3 N -0.57 -32.68 8.56 -181.90 -1.56 -34.24 16 4 C 0.21 11.67 7.06 85.01 0.60 12.27 16 5 C -0.39 -20.32 9.37 23.08 0.22 -20.11 16 6 H 0.11 5.17 7.85 -2.91 -0.02 5.15 16 7 C 0.02 1.14 5.50 85.35 0.47 1.61 16 8 N -0.73 -37.38 11.84 21.88 0.26 -37.13 16 9 Si 1.01 34.51 29.56 68.60 2.03 36.53 16 10 H -0.25 -8.07 7.11 99.48 0.71 -7.37 16 11 H -0.26 -8.48 7.11 99.48 0.71 -7.77 16 12 H -0.26 -8.47 7.11 99.48 0.71 -7.76 16 13 S -0.14 -7.17 23.34 -56.49 -1.32 -8.49 16 14 C -0.36 -17.75 6.06 24.58 0.15 -17.60 16 15 C 0.03 1.05 5.36 -20.08 -0.11 0.95 16 16 C -0.13 -4.63 8.63 22.58 0.19 -4.44 16 17 C -0.11 -3.22 9.68 22.23 0.22 -3.01 16 18 C -0.11 -3.01 5.89 -19.76 -0.12 -3.13 16 19 C -0.10 -1.82 10.00 71.24 0.71 -1.11 16 20 C -0.12 -3.49 9.68 22.23 0.22 -3.27 16 21 C -0.14 -5.48 9.77 22.58 0.22 -5.26 16 22 H 0.08 2.85 7.71 -2.39 -0.02 2.83 16 23 H 0.06 2.48 8.14 -2.39 -0.02 2.47 16 24 H 0.07 2.74 7.46 -2.39 -0.02 2.72 16 25 H 0.30 13.24 8.29 -92.71 -0.77 12.47 16 26 H 0.11 4.06 7.18 -2.91 -0.02 4.04 16 27 H 0.15 3.16 8.06 -2.91 -0.02 3.14 16 28 H 0.08 1.20 8.14 -2.39 -0.02 1.18 16 29 H 0.08 1.14 8.08 -2.39 -0.02 1.12 16 30 H 0.07 1.13 8.08 -2.39 -0.02 1.11 16 31 H 0.14 3.34 8.06 -2.91 -0.02 3.32 16 32 H 0.10 4.02 8.06 -2.91 -0.02 3.99 16 Total: -1.00 -64.78 292.47 4.23 -60.55 By element: Atomic # 1 Polarization: 19.52 SS G_CDS: 1.12 Total: 20.65 kcal Atomic # 6 Polarization: -41.58 SS G_CDS: 3.70 Total: -37.88 kcal Atomic # 7 Polarization: -70.06 SS G_CDS: -1.30 Total: -71.36 kcal Atomic # 14 Polarization: 34.51 SS G_CDS: 2.03 Total: 36.53 kcal Atomic # 16 Polarization: -7.17 SS G_CDS: -1.32 Total: -8.49 kcal Total: -64.78 4.23 -60.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258727364.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.194 kcal (2) G-P(sol) polarization free energy of solvation -64.778 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.232 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.546 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.649 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds