Wall clock time and date at job start Mon Mar 30 2020 06:52:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99776 * 2 1 4 4 C 1.50694 * 109.47281 * 293.95672 * 3 2 1 5 5 H 1.07995 * 120.00472 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99836 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99991 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99940 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47089 * 59.99831 * 8 6 4 10 10 H 1.48499 * 109.47161 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47421 * 300.00132 * 8 6 4 12 12 C 1.46900 * 111.00126 * 123.95516 * 2 1 3 13 13 C 1.53006 * 109.46928 * 66.04441 * 12 2 1 14 14 C 1.50699 * 109.47049 * 179.97438 * 13 12 2 15 15 C 1.33347 * 125.18409 * 90.00037 * 14 13 12 16 16 C 1.38475 * 114.92849 * 180.02562 * 15 14 13 17 17 C 1.33503 * 114.88382 * 0.02562 * 16 15 14 18 18 Cl 1.73595 * 125.20870 * 179.97438 * 17 16 15 19 19 S 1.75877 * 125.19207 * 270.00312 * 14 13 12 20 20 H 1.09001 * 109.47187 * 296.04161 * 1 2 3 21 21 H 1.09001 * 109.47356 * 56.04075 * 1 2 3 22 22 H 1.09000 * 109.47284 * 176.04412 * 1 2 3 23 23 H 1.09004 * 109.47068 * 53.95672 * 3 2 1 24 24 H 1.08999 * 109.46885 * 173.95351 * 3 2 1 25 25 H 0.96996 * 119.99821 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.46870 * 306.04843 * 12 2 1 27 27 H 1.08992 * 109.46932 * 186.04492 * 12 2 1 28 28 H 1.09006 * 109.46804 * 59.99991 * 13 12 2 29 29 H 1.08997 * 109.47086 * 300.00186 * 13 12 2 30 30 H 1.07996 * 122.54060 * 0.02599 * 15 14 13 31 31 H 1.08005 * 122.55896 * 179.73668 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2983 5 1 1.0746 1.5114 -2.0487 6 6 2.0276 3.3492 -1.5287 7 7 2.7128 4.0016 -0.6152 8 14 1.5837 4.1866 -3.1385 9 1 0.1066 4.2238 -3.2862 10 1 2.1158 5.5731 -3.1384 11 1 2.1754 3.4290 -4.2702 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2427 0.9703 14 6 2.1721 -3.0286 2.1369 15 6 1.5181 -3.2617 3.2754 16 6 2.2175 -4.0098 4.2075 17 6 3.4406 -4.3834 3.8245 18 17 4.5447 -5.3235 4.7789 19 16 3.7617 -3.7782 2.2046 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5741 -0.8524 22 1 -0.3634 -1.0252 -0.0709 23 1 1.5611 1.9273 0.8310 24 1 3.0797 1.3444 0.1083 25 1 2.9873 4.9177 -0.7772 26 1 1.5611 -0.3873 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 2.0658 -2.6214 0.0450 29 1 0.5472 -2.3475 0.9322 30 1 0.5187 -2.8949 3.4568 31 1 1.8066 -4.2673 5.1726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000258893226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:51 Heat of formation + Delta-G solvation = 22.710627 kcal Electronic energy + Delta-G solvation = -14389.349512 eV Core-core repulsion = 11823.196575 eV Total energy + Delta-G solvation = -2566.152937 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.34403 -37.04171 -36.45865 -33.01036 -31.78378 -27.98217 -26.95149 -25.37529 -23.66002 -21.93720 -20.12222 -19.46550 -17.50095 -16.34217 -15.89235 -14.86612 -14.79572 -14.30277 -13.88311 -13.63783 -13.31929 -13.14392 -12.57783 -12.25423 -12.10579 -11.86912 -11.31877 -11.24350 -11.14732 -10.90290 -10.81941 -10.65760 -10.54099 -10.36694 -9.85402 -9.26594 -8.64137 -8.54637 -8.44444 -7.29564 -6.03479 -4.05157 0.72918 1.01735 1.76021 2.12326 2.52200 3.33048 3.37178 3.39998 4.40252 4.65084 5.06206 5.21648 5.30227 5.33511 5.40533 5.57732 5.78039 5.90170 6.01988 6.07190 6.16007 6.28461 6.36959 6.45517 6.72353 7.26606 7.31942 7.77630 8.05985 8.16434 8.52002 9.02066 9.58996 11.07425 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.047883 B = 0.003529 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.616206 B = 7931.631843 C = 8175.331520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.034 3.966 2 N -0.542 5.542 3 C 0.193 3.807 4 C -0.509 4.509 5 H 0.063 0.937 6 C 0.055 3.945 7 N -0.899 5.899 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.062 3.938 13 C -0.051 4.051 14 C -0.146 4.146 15 C -0.145 4.145 16 C -0.112 4.112 17 C -0.163 4.163 18 Cl -0.024 7.024 19 S 0.153 5.847 20 H 0.011 0.989 21 H 0.075 0.925 22 H 0.046 0.954 23 H -0.009 1.009 24 H 0.030 0.970 25 H 0.262 0.738 26 H 0.026 0.974 27 H 0.069 0.931 28 H 0.084 0.916 29 H 0.085 0.915 30 H 0.147 0.853 31 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.523 -17.054 9.037 19.307 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 N -0.266 5.266 3 C 0.068 3.932 4 C -0.548 4.548 5 H 0.081 0.919 6 C -0.146 4.146 7 N -0.538 5.538 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.201 1.201 12 C -0.068 4.068 13 C -0.090 4.090 14 C -0.265 4.265 15 C -0.174 4.174 16 C -0.144 4.144 17 C -0.306 4.306 18 Cl 0.005 6.995 19 S 0.416 5.584 20 H 0.030 0.970 21 H 0.094 0.906 22 H 0.065 0.935 23 H 0.009 0.991 24 H 0.048 0.952 25 H 0.072 0.928 26 H 0.045 0.955 27 H 0.088 0.912 28 H 0.103 0.897 29 H 0.104 0.896 30 H 0.164 0.836 31 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 1.069 -17.282 7.747 18.969 hybrid contribution -1.478 0.952 1.148 2.100 sum -0.409 -16.331 8.895 18.600 Atomic orbital electron populations 1.22272 0.88974 0.99517 1.00671 1.62112 1.06975 1.17989 1.39518 1.19733 0.95408 0.81374 0.96685 1.21123 1.34993 0.96951 1.01693 0.91856 1.24998 0.95271 0.97346 0.97013 1.69949 1.38249 1.11515 1.34117 0.86547 0.78680 0.78341 0.83763 1.20284 1.21354 1.20126 1.22031 1.00359 0.91337 0.93062 1.20320 1.01120 0.94215 0.93372 1.24792 0.96884 1.03935 1.00873 1.19963 1.02251 1.02360 0.92861 1.20157 0.92732 0.99909 1.01649 1.25209 0.97082 1.08923 0.99417 1.98351 1.61130 1.70308 1.69760 1.84545 1.15680 1.49276 1.08939 0.97045 0.90641 0.93515 0.99090 0.95214 0.92841 0.95547 0.91244 0.89730 0.89648 0.83579 0.83708 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.64 9.14 60.07 0.55 1.19 16 2 N -0.54 -11.46 4.75 -244.37 -1.16 -12.62 16 3 C 0.19 5.02 4.72 -4.98 -0.02 5.00 16 4 C -0.51 -14.24 8.46 -34.44 -0.29 -14.53 16 5 H 0.06 1.74 7.12 -52.49 -0.37 1.37 16 6 C 0.06 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -26.71 13.29 55.43 0.74 -25.97 16 8 Si 0.90 21.53 29.54 -169.99 -5.02 16.51 16 9 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 10 H -0.29 -6.83 7.11 56.52 0.40 -6.43 16 11 H -0.28 -6.52 7.11 56.52 0.40 -6.11 16 12 C 0.06 1.07 4.94 -3.82 -0.02 1.06 16 13 C -0.05 -0.70 5.63 -27.88 -0.16 -0.85 16 14 C -0.15 -1.84 5.76 -36.02 -0.21 -2.05 16 15 C -0.15 -1.65 10.05 -41.20 -0.41 -2.07 16 16 C -0.11 -1.21 10.13 -41.15 -0.42 -1.63 16 17 C -0.16 -1.88 7.10 29.08 0.21 -1.67 16 18 Cl -0.02 -0.25 29.29 -51.86 -1.52 -1.77 16 19 S 0.15 1.85 23.33 -107.50 -2.51 -0.66 16 20 H 0.01 0.21 8.14 -51.93 -0.42 -0.22 16 21 H 0.07 1.53 6.76 -51.93 -0.35 1.18 16 22 H 0.05 0.72 6.47 -51.93 -0.34 0.39 16 23 H -0.01 -0.24 8.12 -51.93 -0.42 -0.66 16 24 H 0.03 0.83 7.93 -51.93 -0.41 0.41 16 25 H 0.26 7.37 8.31 -40.82 -0.34 7.03 16 26 H 0.03 0.46 8.12 -51.93 -0.42 0.04 16 27 H 0.07 1.26 7.93 -51.93 -0.41 0.85 16 28 H 0.08 1.18 8.14 -51.93 -0.42 0.75 16 29 H 0.09 1.09 6.55 -51.93 -0.34 0.75 16 30 H 0.15 1.44 8.06 -52.49 -0.42 1.01 16 31 H 0.15 1.27 8.06 -52.48 -0.42 0.85 16 LS Contribution 292.62 15.07 4.41 4.41 Total: -1.00 -29.26 292.62 -9.83 -39.09 By element: Atomic # 1 Polarization: -1.00 SS G_CDS: -3.89 Total: -4.89 kcal Atomic # 6 Polarization: -13.22 SS G_CDS: -0.87 Total: -14.09 kcal Atomic # 7 Polarization: -38.17 SS G_CDS: -0.43 Total: -38.59 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.51 kcal Atomic # 16 Polarization: 1.85 SS G_CDS: -2.51 Total: -0.66 kcal Atomic # 17 Polarization: -0.25 SS G_CDS: -1.52 Total: -1.77 kcal Total LS contribution 4.41 Total: 4.41 kcal Total: -29.26 -9.83 -39.09 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258893226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.798 kcal (2) G-P(sol) polarization free energy of solvation -29.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.828 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.087 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.711 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds