Wall clock time and date at job start Mon Mar 30 2020 06:52:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46898 * 110.99776 * 2 1 4 4 C 1.50694 * 109.47281 * 293.95672 * 3 2 1 5 5 H 1.07995 * 120.00472 * 359.97438 * 4 3 2 6 6 C 1.37886 * 119.99836 * 180.02562 * 4 3 2 7 7 N 1.31512 * 119.99991 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99940 * 179.97438 * 6 4 3 9 9 H 1.48501 * 109.47089 * 59.99831 * 8 6 4 10 10 H 1.48499 * 109.47161 * 179.97438 * 8 6 4 11 11 H 1.48493 * 109.47421 * 300.00132 * 8 6 4 12 12 C 1.46900 * 111.00126 * 123.95516 * 2 1 3 13 13 C 1.53006 * 109.46928 * 66.04441 * 12 2 1 14 14 C 1.50699 * 109.47049 * 179.97438 * 13 12 2 15 15 C 1.33347 * 125.18409 * 90.00037 * 14 13 12 16 16 C 1.38475 * 114.92849 * 180.02562 * 15 14 13 17 17 C 1.33503 * 114.88382 * 0.02562 * 16 15 14 18 18 Cl 1.73595 * 125.20870 * 179.97438 * 17 16 15 19 19 S 1.75877 * 125.19207 * 270.00312 * 14 13 12 20 20 H 1.09001 * 109.47187 * 296.04161 * 1 2 3 21 21 H 1.09001 * 109.47356 * 56.04075 * 1 2 3 22 22 H 1.09000 * 109.47284 * 176.04412 * 1 2 3 23 23 H 1.09004 * 109.47068 * 53.95672 * 3 2 1 24 24 H 1.08999 * 109.46885 * 173.95351 * 3 2 1 25 25 H 0.96996 * 119.99821 * 180.02562 * 7 6 4 26 26 H 1.09005 * 109.46870 * 306.04843 * 12 2 1 27 27 H 1.08992 * 109.46932 * 186.04492 * 12 2 1 28 28 H 1.09006 * 109.46804 * 59.99991 * 13 12 2 29 29 H 1.08997 * 109.47086 * 300.00186 * 13 12 2 30 30 H 1.07996 * 122.54060 * 0.02599 * 15 14 13 31 31 H 1.08005 * 122.55896 * 179.73668 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.6368 2.0471 -1.2983 5 1 1.0746 1.5114 -2.0487 6 6 2.0276 3.3492 -1.5287 7 7 2.7128 4.0016 -0.6152 8 14 1.5837 4.1866 -3.1385 9 1 0.1066 4.2238 -3.2862 10 1 2.1158 5.5731 -3.1384 11 1 2.1754 3.4290 -4.2702 12 6 1.9955 -0.7660 1.1376 13 6 1.6315 -2.2427 0.9703 14 6 2.1721 -3.0286 2.1369 15 6 1.5181 -3.2617 3.2754 16 6 2.2175 -4.0098 4.2075 17 6 3.4406 -4.3834 3.8245 18 17 4.5447 -5.3235 4.7789 19 16 3.7617 -3.7782 2.2046 20 1 -0.3633 0.4512 0.9233 21 1 -0.3634 0.5741 -0.8524 22 1 -0.3634 -1.0252 -0.0709 23 1 1.5611 1.9273 0.8310 24 1 3.0797 1.3444 0.1083 25 1 2.9873 4.9177 -0.7772 26 1 1.5611 -0.3873 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 2.0658 -2.6214 0.0450 29 1 0.5472 -2.3475 0.9322 30 1 0.5187 -2.8949 3.4568 31 1 1.8066 -4.2673 5.1726 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000258893226.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:52:50 Heat of formation + Delta-G solvation = 5.705217 kcal Electronic energy + Delta-G solvation = -14390.086922 eV Core-core repulsion = 11823.196575 eV Total energy + Delta-G solvation = -2566.890347 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.36328 -38.35157 -37.53698 -34.91200 -33.23158 -29.53885 -28.51580 -26.88684 -24.96430 -23.40465 -21.74013 -20.37990 -18.56456 -18.40471 -16.94301 -16.59278 -16.25101 -15.88522 -15.22608 -14.80335 -14.63262 -14.18012 -13.92886 -13.76378 -13.48026 -13.26924 -12.87821 -12.75761 -12.50773 -12.40214 -12.27057 -12.18249 -11.90616 -11.70138 -11.52714 -11.29004 -10.60756 -9.56937 -9.49877 -9.03540 -8.19882 -6.30413 -0.19233 0.11474 0.85354 1.23643 1.42528 1.45869 1.53734 1.64100 2.41308 3.12569 3.27620 3.91354 4.07404 4.29173 4.31862 4.45951 4.55450 4.66574 4.76467 4.86173 5.01019 5.02590 5.13561 5.17615 5.20419 5.33956 5.43100 5.65355 6.04795 6.31720 6.61897 6.85866 7.39458 8.91195 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.047883 B = 0.003529 C = 0.003424 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 584.616206 B = 7931.631843 C = 8175.331520 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.549 5.549 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.066 0.934 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.266 1.266 10 H -0.284 1.284 11 H -0.268 1.268 12 C 0.064 3.936 13 C -0.035 4.035 14 C -0.164 4.164 15 C -0.135 4.135 16 C -0.112 4.112 17 C -0.167 4.167 18 Cl -0.015 7.015 19 S 0.133 5.867 20 H 0.011 0.989 21 H 0.057 0.943 22 H 0.087 0.913 23 H -0.038 1.038 24 H 0.001 0.999 25 H 0.264 0.736 26 H 0.026 0.974 27 H 0.053 0.947 28 H 0.082 0.918 29 H 0.102 0.898 30 H 0.166 0.834 31 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.744 -18.150 8.912 20.295 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.273 5.273 3 C 0.080 3.920 4 C -0.563 4.563 5 H 0.084 0.916 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.190 1.190 10 H -0.210 1.210 11 H -0.193 1.193 12 C -0.065 4.065 13 C -0.075 4.075 14 C -0.283 4.283 15 C -0.165 4.165 16 C -0.144 4.144 17 C -0.311 4.311 18 Cl 0.013 6.987 19 S 0.396 5.604 20 H 0.030 0.970 21 H 0.075 0.925 22 H 0.106 0.894 23 H -0.020 1.020 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.044 0.956 27 H 0.072 0.928 28 H 0.100 0.900 29 H 0.121 0.879 30 H 0.183 0.817 31 H 0.186 0.814 Dipole moment (debyes) X Y Z Total from point charges -0.159 -18.409 7.624 19.926 hybrid contribution -1.074 1.222 1.293 2.078 sum -1.233 -17.187 8.917 19.401 Atomic orbital electron populations 1.22301 0.87225 1.01794 0.99842 1.62023 1.08591 1.15156 1.41563 1.19384 0.93551 0.83928 0.95108 1.21464 1.34991 0.97526 1.02364 0.91564 1.25951 0.94970 0.98099 1.00776 1.70086 1.39324 1.11923 1.36326 0.85411 0.78908 0.77083 0.79073 1.19048 1.20975 1.19272 1.22052 0.99317 0.93441 0.91693 1.20096 1.02141 0.91271 0.93960 1.24652 0.97239 1.05207 1.01176 1.20250 1.02892 1.01202 0.92117 1.20433 0.92300 0.99195 1.02454 1.25344 0.97598 1.09051 0.99084 1.98355 1.60942 1.70043 1.69353 1.84602 1.16053 1.49760 1.10012 0.97040 0.92456 0.89418 1.02030 0.98137 0.92687 0.95573 0.92803 0.89962 0.87947 0.81670 0.81390 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.33 9.14 127.69 1.17 2.49 16 2 N -0.55 -23.27 4.75 -927.04 -4.41 -27.68 16 3 C 0.21 11.11 4.72 85.56 0.40 11.51 16 4 C -0.53 -29.77 8.46 25.60 0.22 -29.56 16 5 H 0.07 3.64 7.12 -2.91 -0.02 3.62 16 6 C 0.00 0.00 5.46 84.66 0.46 0.46 16 7 N -0.94 -56.72 13.29 21.45 0.28 -56.44 16 8 Si 0.97 44.09 29.54 68.60 2.03 46.11 16 9 H -0.27 -11.50 7.11 99.48 0.71 -10.80 16 10 H -0.28 -12.65 7.11 99.48 0.71 -11.94 16 11 H -0.27 -11.75 7.11 99.48 0.71 -11.04 16 12 C 0.06 2.22 4.94 86.31 0.43 2.64 16 13 C -0.04 -0.91 5.63 29.85 0.17 -0.74 16 14 C -0.16 -3.87 5.76 24.58 0.14 -3.73 16 15 C -0.14 -2.73 10.05 21.22 0.21 -2.52 16 16 C -0.11 -2.14 10.13 21.25 0.22 -1.92 16 17 C -0.17 -3.59 7.10 66.75 0.47 -3.11 16 18 Cl -0.02 -0.30 29.29 -2.72 -0.08 -0.38 16 19 S 0.13 3.12 23.33 -56.49 -1.32 1.80 16 20 H 0.01 0.40 8.14 -2.39 -0.02 0.38 16 21 H 0.06 2.28 6.76 -2.39 -0.02 2.27 16 22 H 0.09 2.46 6.47 -2.39 -0.02 2.44 16 23 H -0.04 -2.21 8.12 -2.39 -0.02 -2.23 16 24 H 0.00 0.03 7.93 -2.39 -0.02 0.01 16 25 H 0.26 15.08 8.31 -92.71 -0.77 14.31 16 26 H 0.03 0.91 8.12 -2.38 -0.02 0.89 16 27 H 0.05 2.01 7.93 -2.39 -0.02 1.99 16 28 H 0.08 2.18 8.14 -2.38 -0.02 2.16 16 29 H 0.10 2.29 6.55 -2.39 -0.02 2.28 16 30 H 0.17 2.68 8.06 -2.91 -0.02 2.65 16 31 H 0.17 2.40 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -63.23 292.62 1.51 -61.71 By element: Atomic # 1 Polarization: -1.77 SS G_CDS: 1.12 Total: -0.65 kcal Atomic # 6 Polarization: -28.37 SS G_CDS: 3.89 Total: -24.48 kcal Atomic # 7 Polarization: -80.00 SS G_CDS: -4.12 Total: -84.12 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 2.03 Total: 46.11 kcal Atomic # 16 Polarization: 3.12 SS G_CDS: -1.32 Total: 1.80 kcal Atomic # 17 Polarization: -0.30 SS G_CDS: -0.08 Total: -0.38 kcal Total: -63.23 1.51 -61.71 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000258893226.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.420 kcal (2) G-P(sol) polarization free energy of solvation -63.230 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.515 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.715 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.705 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds