Wall clock time and date at job start Mon Mar 30 2020 07:08:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38330 * 119.87797 * 2 1 4 4 C 1.38006 * 120.12412 * 180.02562 * 3 2 1 5 5 C 1.39372 * 119.87753 * 359.97438 * 4 3 2 6 6 C 1.48342 * 120.12382 * 179.97438 * 5 4 3 7 7 C 1.34838 * 122.96083 * 180.02562 * 6 5 4 8 8 S 1.76179 * 107.87482 * 179.97438 * 7 6 5 9 9 C 1.70911 * 90.43495 * 0.02562 * 8 7 6 10 10 C 1.50704 * 124.75239 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46756 * 269.96810 * 10 9 8 12 12 H 1.07999 * 120.00412 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99717 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99863 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47145 * 90.00354 * 15 13 11 17 17 H 1.48497 * 109.47335 * 210.00265 * 15 13 11 18 18 H 1.48500 * 109.47118 * 330.00260 * 15 13 11 19 19 N 1.28794 * 110.49481 * 359.97438 * 9 8 7 20 20 C 1.39373 * 119.75003 * 0.25953 * 5 4 3 21 21 C 1.38006 * 119.87145 * 359.48692 * 20 5 4 22 22 H 1.09008 * 109.47350 * 89.99411 * 1 2 3 23 23 H 1.08997 * 109.47314 * 209.99504 * 1 2 3 24 24 H 1.09003 * 109.46784 * 329.99902 * 1 2 3 25 25 H 1.07995 * 119.93612 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.06428 * 180.02562 * 4 3 2 27 27 H 1.08000 * 126.06387 * 0.24217 * 7 6 5 28 28 H 1.08994 * 109.47283 * 29.97309 * 10 9 8 29 29 H 1.09006 * 109.47138 * 149.97392 * 10 9 8 30 30 H 0.97002 * 120.00188 * 179.97438 * 14 13 11 31 31 H 1.07991 * 120.06165 * 179.74970 * 20 5 4 32 32 H 1.07998 * 119.93610 * 180.23183 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2755 -0.0001 -0.0005 6 6 5.7590 -0.0001 -0.0017 7 6 6.4926 -1.1315 -0.0022 8 16 8.1936 -0.6729 -0.0043 9 6 7.7614 0.9806 -0.0035 10 6 8.7420 2.1249 -0.0050 11 6 9.0707 2.5067 1.4153 12 1 8.6153 1.9738 2.2369 13 6 9.9535 3.5357 1.6658 14 7 10.5084 4.1843 0.6654 15 14 10.3614 4.0085 3.4263 16 1 11.5324 3.2224 3.8913 17 1 10.6817 5.4572 3.4883 18 1 9.1946 3.7217 4.2989 19 7 6.4801 1.1117 -0.0023 20 6 3.5760 -1.2056 -0.0055 21 6 2.1960 -1.1995 0.0004 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6530 2.1330 0.0004 26 1 4.1131 2.1424 -0.0001 27 1 6.1060 -2.1399 -0.0056 28 1 9.6535 1.8216 -0.5200 29 1 8.3020 2.9799 -0.5185 30 1 11.1292 4.9085 0.8416 31 1 4.1129 -2.1426 -0.0096 32 1 1.6529 -2.1330 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259057648.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:13 Heat of formation + Delta-G solvation = 49.085851 kcal Electronic energy + Delta-G solvation = -15640.048312 eV Core-core repulsion = 13077.471939 eV Total energy + Delta-G solvation = -2562.576372 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.76828 -38.36117 -33.80082 -32.82457 -30.99204 -30.54514 -28.08748 -26.72571 -24.49828 -22.64020 -22.23236 -20.75426 -18.98623 -17.47796 -16.47650 -16.06218 -15.05813 -14.87772 -14.60593 -14.10316 -14.04700 -13.67216 -13.37207 -13.04906 -12.54292 -12.33220 -12.26444 -11.82844 -11.48254 -11.37612 -10.93667 -10.86062 -10.74179 -10.68396 -10.08890 -9.69358 -9.01734 -8.87234 -8.85153 -8.71675 -8.50986 -7.62299 -6.14895 -4.19553 0.90245 1.51585 1.75541 2.01924 2.43366 3.27273 3.32834 3.35733 3.41327 4.13036 4.37670 4.56955 4.82242 4.91442 5.08687 5.21650 5.26143 5.43437 5.47369 5.47638 5.62990 5.75640 5.86650 5.98500 6.11865 6.22126 6.43054 6.63121 6.74864 6.80325 7.07898 7.25751 7.36131 7.79026 8.09807 8.48834 8.82073 9.44454 10.95265 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.004695 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.809925 B = 5962.946791 C = 6616.367645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.124 4.124 4 C -0.082 4.082 5 C -0.013 4.013 6 C 0.108 3.892 7 C -0.288 4.288 8 S 0.094 5.906 9 C 0.129 3.871 10 C 0.084 3.916 11 C -0.514 4.514 12 H 0.059 0.941 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.901 3.099 16 H -0.278 1.278 17 H -0.284 1.284 18 H -0.272 1.272 19 N -0.488 5.488 20 C -0.104 4.104 21 C -0.125 4.125 22 H 0.068 0.932 23 H 0.064 0.936 24 H 0.065 0.935 25 H 0.122 0.878 26 H 0.136 0.864 27 H 0.167 0.833 28 H 0.044 0.956 29 H 0.055 0.945 30 H 0.265 0.735 31 H 0.122 0.878 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.253 -10.362 -2.273 17.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.092 4.092 3 C -0.142 4.142 4 C -0.101 4.101 5 C -0.016 4.016 6 C -0.023 4.023 7 C -0.428 4.428 8 S 0.352 5.648 9 C -0.150 4.150 10 C 0.043 3.957 11 C -0.554 4.554 12 H 0.077 0.923 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.728 3.272 16 H -0.204 1.204 17 H -0.210 1.210 18 H -0.197 1.197 19 N -0.201 5.201 20 C -0.123 4.123 21 C -0.143 4.143 22 H 0.087 0.913 23 H 0.083 0.917 24 H 0.084 0.916 25 H 0.140 0.860 26 H 0.154 0.846 27 H 0.184 0.816 28 H 0.062 0.938 29 H 0.073 0.927 30 H 0.075 0.925 31 H 0.140 0.860 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -13.342 -10.240 -2.330 16.980 hybrid contribution -0.572 0.227 0.976 1.154 sum -13.915 -10.013 -1.354 17.196 Atomic orbital electron populations 1.20776 0.91428 1.02578 1.02110 1.19957 0.95906 0.93283 1.00036 1.21003 0.94030 0.97484 1.01644 1.21383 0.93641 0.98445 0.96614 1.18158 0.89077 0.93587 1.00790 1.18831 0.93728 0.87483 1.02298 1.26731 0.96087 1.02881 1.17104 1.83893 1.06237 1.05723 1.68943 1.28132 0.93665 0.98307 0.94932 1.18183 0.90044 0.88221 0.99211 1.20896 1.26284 1.17710 0.90522 0.92275 1.24952 0.95566 0.95724 0.97683 1.69936 1.29670 1.22452 1.30830 0.86440 0.78815 0.77740 0.84202 1.20404 1.20952 1.19716 1.66256 1.05000 1.29818 1.19065 1.21091 0.94031 0.97071 1.00091 1.20841 0.93709 0.97415 1.02312 0.91342 0.91743 0.91631 0.85972 0.84617 0.81594 0.93761 0.92696 0.92525 0.85976 0.86105 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.00 0.36 -0.58 16 2 C -0.09 -1.07 5.88 -104.56 -0.62 -1.68 16 3 C -0.12 -1.62 9.68 -39.63 -0.38 -2.01 16 4 C -0.08 -1.31 9.64 -39.24 -0.38 -1.69 16 5 C -0.01 -0.22 5.88 -104.89 -0.62 -0.84 16 6 C 0.11 2.07 6.65 -84.62 -0.56 1.50 16 7 C -0.29 -4.89 10.63 29.53 0.31 -4.58 16 8 S 0.09 1.75 23.16 -107.50 -2.49 -0.74 16 9 C 0.13 2.91 6.55 -13.55 -0.09 2.82 16 10 C 0.08 2.15 5.55 -29.03 -0.16 1.99 16 11 C -0.51 -14.29 9.09 -34.44 -0.31 -14.60 16 12 H 0.06 1.65 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 14 N -0.89 -25.64 13.29 55.43 0.74 -24.91 16 15 Si 0.90 21.33 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 18 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 19 N -0.49 -10.87 9.92 -8.43 -0.08 -10.95 16 20 C -0.10 -1.40 9.49 -39.24 -0.37 -1.77 16 21 C -0.12 -1.46 9.68 -39.63 -0.38 -1.85 16 22 H 0.07 0.51 8.14 -51.92 -0.42 0.09 16 23 H 0.06 0.46 8.08 -51.93 -0.42 0.05 16 24 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 25 H 0.12 1.34 8.06 -52.49 -0.42 0.91 16 26 H 0.14 2.34 7.70 -52.49 -0.40 1.94 16 27 H 0.17 2.21 6.90 -52.49 -0.36 1.85 16 28 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 29 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 30 H 0.27 7.19 8.31 -40.82 -0.34 6.85 16 31 H 0.12 1.40 6.66 -52.49 -0.35 1.05 16 32 H 0.12 1.09 8.06 -52.49 -0.42 0.66 16 LS Contribution 295.43 15.07 4.45 4.45 Total: -1.00 -29.92 295.43 -9.31 -39.24 By element: Atomic # 1 Polarization: 1.83 SS G_CDS: -3.61 Total: -1.78 kcal Atomic # 6 Polarization: -18.32 SS G_CDS: -3.30 Total: -21.62 kcal Atomic # 7 Polarization: -36.51 SS G_CDS: 0.65 Total: -35.86 kcal Atomic # 14 Polarization: 21.33 SS G_CDS: -5.02 Total: 16.31 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.49 Total: -0.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.92 -9.31 -39.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259057648.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.323 kcal (2) G-P(sol) polarization free energy of solvation -29.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.401 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.315 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.086 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds