Wall clock time and date at job start Mon Mar 30 2020 07:08:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38330 * 119.87797 * 2 1 4 4 C 1.38006 * 120.12412 * 180.02562 * 3 2 1 5 5 C 1.39372 * 119.87753 * 359.97438 * 4 3 2 6 6 C 1.48342 * 120.12382 * 179.97438 * 5 4 3 7 7 C 1.34838 * 122.96083 * 180.02562 * 6 5 4 8 8 S 1.76179 * 107.87482 * 179.97438 * 7 6 5 9 9 C 1.70911 * 90.43495 * 0.02562 * 8 7 6 10 10 C 1.50704 * 124.75239 * 180.02562 * 9 8 7 11 11 C 1.50698 * 109.46756 * 269.96810 * 10 9 8 12 12 H 1.07999 * 120.00412 * 0.02562 * 11 10 9 13 13 C 1.37881 * 119.99717 * 179.97438 * 11 10 9 14 14 N 1.31508 * 120.00142 * 0.02562 * 13 11 10 15 15 Si 1.86798 * 119.99863 * 180.02562 * 13 11 10 16 16 H 1.48503 * 109.47145 * 90.00354 * 15 13 11 17 17 H 1.48497 * 109.47335 * 210.00265 * 15 13 11 18 18 H 1.48500 * 109.47118 * 330.00260 * 15 13 11 19 19 N 1.28794 * 110.49481 * 359.97438 * 9 8 7 20 20 C 1.39373 * 119.75003 * 0.25953 * 5 4 3 21 21 C 1.38006 * 119.87145 * 359.48692 * 20 5 4 22 22 H 1.09008 * 109.47350 * 89.99411 * 1 2 3 23 23 H 1.08997 * 109.47314 * 209.99504 * 1 2 3 24 24 H 1.09003 * 109.46784 * 329.99902 * 1 2 3 25 25 H 1.07995 * 119.93612 * 0.02562 * 3 2 1 26 26 H 1.08000 * 120.06428 * 180.02562 * 4 3 2 27 27 H 1.08000 * 126.06387 * 0.24217 * 7 6 5 28 28 H 1.08994 * 109.47283 * 29.97309 * 10 9 8 29 29 H 1.09006 * 109.47138 * 149.97392 * 10 9 8 30 30 H 0.97002 * 120.00188 * 179.97438 * 14 13 11 31 31 H 1.07991 * 120.06165 * 179.74970 * 20 5 4 32 32 H 1.07998 * 119.93610 * 180.23183 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1960 1.1994 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2755 -0.0001 -0.0005 6 6 5.7590 -0.0001 -0.0017 7 6 6.4926 -1.1315 -0.0022 8 16 8.1936 -0.6729 -0.0043 9 6 7.7614 0.9806 -0.0035 10 6 8.7420 2.1249 -0.0050 11 6 9.0707 2.5067 1.4153 12 1 8.6153 1.9738 2.2369 13 6 9.9535 3.5357 1.6658 14 7 10.5084 4.1843 0.6654 15 14 10.3614 4.0085 3.4263 16 1 11.5324 3.2224 3.8913 17 1 10.6817 5.4572 3.4883 18 1 9.1946 3.7217 4.2989 19 7 6.4801 1.1117 -0.0023 20 6 3.5760 -1.2056 -0.0055 21 6 2.1960 -1.1995 0.0004 22 1 -0.3634 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5137 24 1 -0.3633 0.8900 0.5139 25 1 1.6530 2.1330 0.0004 26 1 4.1131 2.1424 -0.0001 27 1 6.1060 -2.1399 -0.0056 28 1 9.6535 1.8216 -0.5200 29 1 8.3020 2.9799 -0.5185 30 1 11.1292 4.9085 0.8416 31 1 4.1129 -2.1426 -0.0096 32 1 1.6529 -2.1330 0.0003 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259057648.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:12 Heat of formation + Delta-G solvation = 32.781578 kcal Electronic energy + Delta-G solvation = -15640.755318 eV Core-core repulsion = 13077.471939 eV Total energy + Delta-G solvation = -2563.283379 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.08256 -39.59979 -35.65128 -34.18729 -32.26037 -31.91953 -29.69968 -27.77992 -26.33397 -24.08236 -23.32914 -22.06637 -20.45418 -18.92075 -18.59992 -17.29106 -16.67082 -16.05940 -15.82731 -15.61532 -15.44892 -14.58860 -14.55572 -14.30028 -14.25661 -14.02528 -13.31567 -12.99568 -12.97758 -12.73971 -12.62542 -12.58339 -12.09731 -12.01064 -11.83643 -11.68581 -10.68715 -10.45105 -10.31524 -10.26682 -9.87455 -8.91414 -8.27545 -6.41501 -0.38598 0.41142 0.49127 0.52288 0.89626 1.38776 1.40227 1.51563 1.99593 2.37967 2.97880 3.03892 3.20817 3.88257 3.99655 4.10297 4.15898 4.28637 4.41543 4.54328 4.63109 4.85770 4.89043 4.91806 5.01732 5.16600 5.18465 5.25438 5.31435 5.53904 5.61821 5.65678 5.68818 5.99247 6.07977 6.65179 6.94811 7.26822 8.82428 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.026045 B = 0.004695 C = 0.004231 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1074.809925 B = 5962.946791 C = 6616.367645 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.085 4.085 3 C -0.130 4.130 4 C -0.109 4.109 5 C -0.045 4.045 6 C 0.083 3.917 7 C -0.265 4.265 8 S 0.143 5.857 9 C 0.077 3.923 10 C 0.095 3.905 11 C -0.533 4.533 12 H 0.051 0.949 13 C 0.014 3.986 14 N -0.923 5.923 15 Si 0.968 3.032 16 H -0.264 1.264 17 H -0.276 1.276 18 H -0.272 1.272 19 N -0.512 5.512 20 C -0.101 4.101 21 C -0.121 4.121 22 H 0.081 0.919 23 H 0.083 0.917 24 H 0.071 0.929 25 H 0.137 0.863 26 H 0.105 0.895 27 H 0.212 0.788 28 H 0.033 0.967 29 H 0.019 0.981 30 H 0.270 0.730 31 H 0.147 0.853 32 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.321 -13.017 -1.350 20.920 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.086 4.086 3 C -0.148 4.148 4 C -0.128 4.128 5 C -0.048 4.048 6 C -0.048 4.048 7 C -0.404 4.404 8 S 0.399 5.601 9 C -0.201 4.201 10 C 0.055 3.945 11 C -0.572 4.572 12 H 0.069 0.931 13 C -0.186 4.186 14 N -0.562 5.562 15 Si 0.792 3.208 16 H -0.189 1.189 17 H -0.201 1.201 18 H -0.197 1.197 19 N -0.226 5.226 20 C -0.120 4.120 21 C -0.138 4.138 22 H 0.100 0.900 23 H 0.102 0.898 24 H 0.090 0.910 25 H 0.155 0.845 26 H 0.123 0.877 27 H 0.229 0.771 28 H 0.051 0.949 29 H 0.038 0.962 30 H 0.079 0.921 31 H 0.164 0.836 32 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -15.417 -12.895 -1.414 20.149 hybrid contribution -0.078 0.965 0.632 1.157 sum -15.494 -11.930 -0.782 19.571 Atomic orbital electron populations 1.20856 0.88642 1.03914 1.03336 1.20417 0.97902 0.92588 0.97677 1.21207 0.92848 0.99271 1.01455 1.21301 0.95085 0.97479 0.98949 1.18288 0.87860 0.95075 1.03569 1.19259 0.95172 0.87139 1.03213 1.27248 0.94813 1.04256 1.14060 1.83520 1.07089 1.01726 1.67716 1.27490 0.93671 1.00114 0.98837 1.17765 0.90234 0.88685 0.97864 1.21142 1.26567 1.18174 0.91333 0.93090 1.25839 0.95217 0.95450 1.02073 1.70043 1.30169 1.22922 1.33032 0.85397 0.78775 0.77796 0.78808 1.18936 1.20117 1.19696 1.66183 1.05326 1.32523 1.18603 1.21366 0.94981 0.96552 0.99062 1.21298 0.93137 0.98902 1.00478 0.89994 0.89850 0.90964 0.84475 0.87726 0.77142 0.94922 0.96237 0.92121 0.83575 0.82417 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.41 10.01 71.23 0.71 -0.70 16 2 C -0.09 -1.74 5.88 -19.82 -0.12 -1.86 16 3 C -0.13 -3.32 9.68 22.24 0.22 -3.10 16 4 C -0.11 -3.62 9.64 22.49 0.22 -3.41 16 5 C -0.05 -1.49 5.88 -20.04 -0.12 -1.61 16 6 C 0.08 3.17 6.65 40.95 0.27 3.44 16 7 C -0.26 -8.46 10.63 67.04 0.71 -7.74 16 8 S 0.14 5.22 23.16 -56.49 -1.31 3.91 16 9 C 0.08 3.65 6.55 88.56 0.58 4.23 16 10 C 0.09 5.19 5.55 29.10 0.16 5.36 16 11 C -0.53 -30.90 9.09 25.60 0.23 -30.67 16 12 H 0.05 2.96 7.74 -2.91 -0.02 2.94 16 13 C 0.01 0.79 5.46 84.66 0.46 1.25 16 14 N -0.92 -54.87 13.29 21.45 0.28 -54.58 16 15 Si 0.97 44.40 29.54 68.60 2.03 46.42 16 16 H -0.26 -11.49 7.11 99.48 0.71 -10.78 16 17 H -0.28 -12.22 7.11 99.48 0.71 -11.51 16 18 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 19 N -0.51 -23.93 9.92 -180.57 -1.79 -25.72 16 20 C -0.10 -2.42 9.49 22.49 0.21 -2.21 16 21 C -0.12 -2.35 9.68 22.24 0.22 -2.13 16 22 H 0.08 0.89 8.14 -2.38 -0.02 0.87 16 23 H 0.08 0.79 8.08 -2.39 -0.02 0.77 16 24 H 0.07 0.85 8.08 -2.39 -0.02 0.83 16 25 H 0.14 2.92 8.06 -2.91 -0.02 2.90 16 26 H 0.10 4.00 7.70 -2.91 -0.02 3.98 16 27 H 0.21 4.65 6.90 -2.91 -0.02 4.63 16 28 H 0.03 1.80 8.14 -2.39 -0.02 1.78 16 29 H 0.02 1.16 8.14 -2.38 -0.02 1.15 16 30 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 31 H 0.15 2.69 6.66 -2.92 -0.02 2.67 16 32 H 0.16 1.93 8.06 -2.91 -0.02 1.90 16 Total: -1.00 -68.58 295.43 4.09 -64.48 By element: Atomic # 1 Polarization: 3.52 SS G_CDS: 1.12 Total: 4.64 kcal Atomic # 6 Polarization: -42.92 SS G_CDS: 3.76 Total: -39.16 kcal Atomic # 7 Polarization: -78.80 SS G_CDS: -1.51 Total: -80.30 kcal Atomic # 14 Polarization: 44.40 SS G_CDS: 2.03 Total: 46.42 kcal Atomic # 16 Polarization: 5.22 SS G_CDS: -1.31 Total: 3.91 kcal Total: -68.58 4.09 -64.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259057648.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.265 kcal (2) G-P(sol) polarization free energy of solvation -68.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.688 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.094 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.483 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.782 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds