Wall clock time and date at job start Mon Mar 30 2020 07:09:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85563 * 2 1 4 4 C 1.37971 * 120.14512 * 180.02562 * 3 2 1 5 5 C 1.39546 * 119.85200 * 359.97381 * 4 3 2 6 6 C 1.47871 * 120.14279 * 179.97438 * 5 4 3 7 7 N 1.30221 * 125.47216 * 179.71789 * 6 5 4 8 8 C 1.31310 * 117.03814 * 180.26426 * 7 6 5 9 9 C 1.50705 * 122.07404 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47220 * 304.97619 * 9 8 7 11 11 H 1.07998 * 120.00289 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99991 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00211 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46914 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47021 * 120.00093 * 14 12 10 17 17 H 1.48492 * 109.47235 * 240.00146 * 14 12 10 18 18 C 1.33723 * 115.85160 * 359.97438 * 8 7 6 19 19 S 1.76179 * 125.47013 * 0.02562 * 6 5 4 20 20 C 1.39557 * 119.72093 * 0.25283 * 5 4 3 21 21 C 1.37969 * 119.84921 * 359.51499 * 20 5 4 22 22 H 1.08996 * 109.47469 * 90.00240 * 1 2 3 23 23 H 1.09001 * 109.47103 * 210.00399 * 1 2 3 24 24 H 1.08998 * 109.46982 * 330.00273 * 1 2 3 25 25 H 1.08002 * 119.92868 * 359.97166 * 3 2 1 26 26 H 1.07997 * 120.07556 * 179.97438 * 4 3 2 27 27 H 1.09007 * 109.46864 * 64.97934 * 9 8 7 28 28 H 1.09001 * 109.46972 * 184.97540 * 9 8 7 29 29 H 0.97001 * 120.00017 * 180.02562 * 13 12 10 30 30 H 1.08001 * 125.89271 * 180.02562 * 18 8 7 31 31 H 1.07994 * 120.07394 * 179.72830 * 20 5 4 32 32 H 1.08001 * 119.93033 * 180.22760 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2069 -0.0005 5 6 4.2761 0.0001 -0.0005 6 6 5.7548 0.0001 -0.0017 7 7 6.5105 -1.0604 0.0035 8 6 7.8094 -0.8678 0.0068 9 6 8.7883 -2.0137 0.0123 10 6 8.4919 -2.9220 1.1776 11 1 7.6761 -2.6928 1.8471 12 6 9.2617 -4.0462 1.3885 13 7 10.2548 -4.3257 0.5730 14 14 8.8948 -5.1719 2.8335 15 1 7.7359 -4.6393 3.5940 16 1 8.5742 -6.5325 2.3322 17 1 10.0823 -5.2390 3.7226 18 6 8.2097 0.4081 0.0040 19 16 6.7772 1.4349 -0.0025 20 6 3.5754 -1.2068 -0.0053 21 6 2.1958 -1.1999 0.0001 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6522 2.1332 -0.0005 26 1 4.1119 2.1442 -0.0010 27 1 8.6965 -2.5744 -0.9180 28 1 9.8024 -1.6247 0.1035 29 1 10.7962 -5.1168 0.7211 30 1 9.2340 0.7503 0.0057 31 1 4.1119 -2.1440 -0.0098 32 1 1.6522 -2.1331 0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259240239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:19 Heat of formation + Delta-G solvation = 52.615757 kcal Electronic energy + Delta-G solvation = -15696.058112 eV Core-core repulsion = 13133.634808 eV Total energy + Delta-G solvation = -2562.423304 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.56017 -38.64408 -33.72329 -32.82742 -30.99661 -30.45656 -27.81781 -27.06393 -24.01310 -22.89262 -22.63406 -20.73328 -18.66559 -17.49246 -16.40295 -15.82777 -15.20689 -15.08220 -14.61047 -14.14592 -13.90702 -13.69881 -13.44166 -12.80031 -12.66344 -12.30789 -12.24896 -11.86378 -11.65241 -11.32255 -11.19133 -10.98775 -10.74614 -10.49566 -9.69020 -9.52051 -9.18752 -9.02861 -8.94985 -8.64849 -8.39767 -7.61014 -6.02862 -4.03802 0.60575 1.42454 1.80313 1.83873 2.24076 3.32008 3.38869 3.44155 3.51924 3.97464 4.35851 4.47848 4.76196 4.84657 5.01734 5.23456 5.32758 5.37828 5.43342 5.55552 5.69770 5.73481 5.87937 5.97545 6.10588 6.20750 6.39813 6.55662 6.57744 6.94585 6.97969 7.43263 7.51608 7.93808 8.26969 8.53454 8.99649 9.58851 11.08235 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.005317 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.054403 B = 5265.219148 C = 6337.002925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.082 4.082 3 C -0.122 4.122 4 C -0.098 4.098 5 C -0.017 4.017 6 C 0.101 3.899 7 N -0.431 5.431 8 C 0.113 3.887 9 C 0.081 3.919 10 C -0.501 4.501 11 H 0.059 0.941 12 C 0.057 3.943 13 N -0.898 5.898 14 Si 0.896 3.104 15 H -0.273 1.273 16 H -0.283 1.283 17 H -0.284 1.284 18 C -0.258 4.258 19 S 0.016 5.984 20 C -0.069 4.069 21 C -0.122 4.122 22 H 0.070 0.930 23 H 0.066 0.934 24 H 0.065 0.935 25 H 0.125 0.875 26 H 0.124 0.876 27 H 0.040 0.960 28 H 0.037 0.963 29 H 0.261 0.739 30 H 0.173 0.827 31 H 0.140 0.860 32 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.573 11.404 -2.032 19.408 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.118 4.118 5 C -0.021 4.021 6 C -0.174 4.174 7 N -0.145 5.145 8 C -0.017 4.017 9 C 0.042 3.958 10 C -0.540 4.540 11 H 0.078 0.922 12 C -0.144 4.144 13 N -0.537 5.537 14 Si 0.724 3.276 15 H -0.197 1.197 16 H -0.209 1.209 17 H -0.210 1.210 18 C -0.395 4.395 19 S 0.271 5.729 20 C -0.090 4.090 21 C -0.140 4.140 22 H 0.089 0.911 23 H 0.085 0.915 24 H 0.084 0.916 25 H 0.143 0.857 26 H 0.142 0.858 27 H 0.058 0.942 28 H 0.055 0.945 29 H 0.071 0.929 30 H 0.191 0.809 31 H 0.158 0.842 32 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -15.742 11.879 -2.063 19.828 hybrid contribution 0.719 -1.230 0.799 1.634 sum -15.023 10.648 -1.264 18.457 Atomic orbital electron populations 1.20799 0.91209 1.02761 1.02286 1.20027 0.96076 0.93207 0.99033 1.20834 0.93457 0.97625 1.02127 1.21128 0.94359 0.96689 0.99669 1.17890 0.87323 0.94168 1.02706 1.25858 0.96734 0.89608 1.05221 1.66413 1.05204 1.29430 1.13407 1.21147 0.89929 0.95505 0.95166 1.18080 0.90501 0.88507 0.98740 1.21031 1.14932 1.07397 1.10647 0.92225 1.24978 0.95070 0.97674 0.96693 1.69956 1.19262 1.27097 1.37408 0.86456 0.78200 0.80555 0.82378 1.19718 1.20911 1.21015 1.26759 1.01681 0.95043 1.16035 1.84371 1.01101 1.14608 1.72850 1.21403 0.93718 0.98127 0.95776 1.21018 0.93832 0.97678 1.01490 0.91147 0.91471 0.91596 0.85748 0.85843 0.94161 0.94459 0.92917 0.80942 0.84223 0.85576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.08 -0.89 5.89 -104.54 -0.62 -1.51 16 3 C -0.12 -1.35 9.68 -39.64 -0.38 -1.73 16 4 C -0.10 -1.28 9.61 -39.19 -0.38 -1.66 16 5 C -0.02 -0.27 5.87 -104.98 -0.62 -0.89 16 6 C 0.10 1.91 7.35 -14.29 -0.11 1.81 16 7 N -0.43 -9.69 9.93 -7.55 -0.07 -9.76 16 8 C 0.11 2.61 5.99 -84.40 -0.51 2.10 16 9 C 0.08 2.15 5.45 -29.03 -0.16 1.99 16 10 C -0.50 -14.46 8.97 -34.44 -0.31 -14.76 16 11 H 0.06 1.75 7.72 -52.49 -0.41 1.34 16 12 C 0.06 1.63 5.46 -17.82 -0.10 1.54 16 13 N -0.90 -26.74 13.29 55.43 0.74 -26.00 16 14 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 15 H -0.27 -6.67 7.11 56.52 0.40 -6.27 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 18 C -0.26 -5.01 11.02 29.15 0.32 -4.69 16 19 S 0.02 0.27 22.40 -107.50 -2.41 -2.14 16 20 C -0.07 -1.06 9.68 -39.19 -0.38 -1.43 16 21 C -0.12 -1.50 9.68 -39.64 -0.38 -1.88 16 22 H 0.07 0.48 8.14 -51.93 -0.42 0.05 16 23 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 24 H 0.07 0.43 8.08 -51.93 -0.42 0.01 16 25 H 0.12 1.03 8.06 -52.49 -0.42 0.60 16 26 H 0.12 1.44 7.30 -52.49 -0.38 1.06 16 27 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 28 H 0.04 0.99 8.01 -51.93 -0.42 0.58 16 29 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 30 H 0.17 2.95 8.06 -52.49 -0.42 2.53 16 31 H 0.14 2.32 7.82 -52.49 -0.41 1.91 16 32 H 0.13 1.27 8.06 -52.49 -0.42 0.85 16 LS Contribution 296.90 15.07 4.47 4.47 Total: -1.00 -31.29 296.90 -9.24 -40.54 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -3.70 Total: -2.52 kcal Atomic # 6 Polarization: -18.38 SS G_CDS: -3.25 Total: -21.63 kcal Atomic # 7 Polarization: -36.42 SS G_CDS: 0.66 Total: -35.76 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 0.27 SS G_CDS: -2.41 Total: -2.14 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.29 -9.24 -40.54 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259240239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.155 kcal (2) G-P(sol) polarization free energy of solvation -31.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 61.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds