Wall clock time and date at job start Mon Mar 30 2020 07:09:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50695 * 1 3 3 C 1.38355 * 119.85563 * 2 1 4 4 C 1.37971 * 120.14512 * 180.02562 * 3 2 1 5 5 C 1.39546 * 119.85200 * 359.97381 * 4 3 2 6 6 C 1.47871 * 120.14279 * 179.97438 * 5 4 3 7 7 N 1.30221 * 125.47216 * 179.71789 * 6 5 4 8 8 C 1.31310 * 117.03814 * 180.26426 * 7 6 5 9 9 C 1.50705 * 122.07404 * 180.02562 * 8 7 6 10 10 C 1.50695 * 109.47220 * 304.97619 * 9 8 7 11 11 H 1.07998 * 120.00289 * 0.02562 * 10 9 8 12 12 C 1.37874 * 119.99991 * 179.97438 * 10 9 8 13 13 N 1.31515 * 119.99957 * 0.02562 * 12 10 9 14 14 Si 1.86804 * 120.00211 * 179.97438 * 12 10 9 15 15 H 1.48498 * 109.46914 * 0.02562 * 14 12 10 16 16 H 1.48507 * 109.47021 * 120.00093 * 14 12 10 17 17 H 1.48492 * 109.47235 * 240.00146 * 14 12 10 18 18 C 1.33723 * 115.85160 * 359.97438 * 8 7 6 19 19 S 1.76179 * 125.47013 * 0.02562 * 6 5 4 20 20 C 1.39557 * 119.72093 * 0.25283 * 5 4 3 21 21 C 1.37969 * 119.84921 * 359.51499 * 20 5 4 22 22 H 1.08996 * 109.47469 * 90.00240 * 1 2 3 23 23 H 1.09001 * 109.47103 * 210.00399 * 1 2 3 24 24 H 1.08998 * 109.46982 * 330.00273 * 1 2 3 25 25 H 1.08002 * 119.92868 * 359.97166 * 3 2 1 26 26 H 1.07997 * 120.07556 * 179.97438 * 4 3 2 27 27 H 1.09007 * 109.46864 * 64.97934 * 9 8 7 28 28 H 1.09001 * 109.46972 * 184.97540 * 9 8 7 29 29 H 0.97001 * 120.00017 * 180.02562 * 13 12 10 30 30 H 1.08001 * 125.89271 * 180.02562 * 18 8 7 31 31 H 1.07994 * 120.07394 * 179.72830 * 20 5 4 32 32 H 1.08001 * 119.93033 * 180.22760 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1957 1.1999 0.0000 4 6 3.5754 1.2069 -0.0005 5 6 4.2761 0.0001 -0.0005 6 6 5.7548 0.0001 -0.0017 7 7 6.5105 -1.0604 0.0035 8 6 7.8094 -0.8678 0.0068 9 6 8.7883 -2.0137 0.0123 10 6 8.4919 -2.9220 1.1776 11 1 7.6761 -2.6928 1.8471 12 6 9.2617 -4.0462 1.3885 13 7 10.2548 -4.3257 0.5730 14 14 8.8948 -5.1719 2.8335 15 1 7.7359 -4.6393 3.5940 16 1 8.5742 -6.5325 2.3322 17 1 10.0823 -5.2390 3.7226 18 6 8.2097 0.4081 0.0040 19 16 6.7772 1.4349 -0.0025 20 6 3.5754 -1.2068 -0.0053 21 6 2.1958 -1.1999 0.0001 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6522 2.1332 -0.0005 26 1 4.1119 2.1442 -0.0010 27 1 8.6965 -2.5744 -0.9180 28 1 9.8024 -1.6247 0.1035 29 1 10.7962 -5.1168 0.7211 30 1 9.2340 0.7503 0.0057 31 1 4.1119 -2.1440 -0.0098 32 1 1.6522 -2.1331 0.0001 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259240239.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:18 Heat of formation + Delta-G solvation = 34.957924 kcal Electronic energy + Delta-G solvation = -15696.823813 eV Core-core repulsion = 13133.634808 eV Total energy + Delta-G solvation = -2563.189005 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.86318 -39.90520 -35.43691 -34.33420 -32.14085 -31.90698 -29.54834 -28.22165 -25.76468 -24.37231 -23.72959 -21.89589 -20.16189 -19.01894 -18.36336 -17.28611 -16.61199 -16.18374 -16.07663 -15.65387 -15.25551 -14.59260 -14.43069 -14.39926 -14.04499 -13.93290 -13.61789 -13.19495 -12.94853 -12.90678 -12.66433 -12.42224 -12.30002 -11.93909 -11.69223 -11.49734 -10.69048 -10.57832 -10.53018 -9.98547 -9.92862 -8.95830 -8.23778 -6.33769 -0.67487 0.38891 0.43840 0.60228 0.72013 1.35966 1.36776 1.50547 2.00431 2.39998 2.85326 3.03693 3.10837 3.90211 3.97118 4.06484 4.16132 4.36004 4.46513 4.48635 4.58354 4.80752 4.87850 4.92524 5.09327 5.12956 5.26430 5.31244 5.35493 5.46108 5.55516 5.64430 5.69329 6.00602 6.12344 6.74067 6.97416 7.33169 8.87249 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.021271 B = 0.005317 C = 0.004417 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1316.054403 B = 5265.219148 C = 6337.002925 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.071 4.071 3 C -0.117 4.117 4 C -0.095 4.095 5 C -0.053 4.053 6 C 0.094 3.906 7 N -0.482 5.482 8 C 0.079 3.921 9 C 0.090 3.910 10 C -0.520 4.520 11 H 0.046 0.954 12 C 0.006 3.994 13 N -0.929 5.929 14 Si 0.965 3.035 15 H -0.272 1.272 16 H -0.274 1.274 17 H -0.271 1.271 18 C -0.267 4.267 19 S 0.111 5.889 20 C -0.090 4.090 21 C -0.126 4.126 22 H 0.084 0.916 23 H 0.074 0.926 24 H 0.084 0.916 25 H 0.163 0.837 26 H 0.139 0.861 27 H 0.007 0.993 28 H 0.025 0.975 29 H 0.267 0.733 30 H 0.191 0.809 31 H 0.110 0.890 32 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.384 13.431 -1.241 22.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.072 4.072 3 C -0.135 4.135 4 C -0.115 4.115 5 C -0.057 4.057 6 C -0.181 4.181 7 N -0.197 5.197 8 C -0.051 4.051 9 C 0.050 3.950 10 C -0.558 4.558 11 H 0.065 0.935 12 C -0.192 4.192 13 N -0.569 5.569 14 Si 0.790 3.210 15 H -0.197 1.197 16 H -0.200 1.200 17 H -0.196 1.196 18 C -0.405 4.405 19 S 0.366 5.634 20 C -0.112 4.112 21 C -0.144 4.144 22 H 0.103 0.897 23 H 0.093 0.907 24 H 0.103 0.897 25 H 0.180 0.820 26 H 0.156 0.844 27 H 0.025 0.975 28 H 0.044 0.956 29 H 0.076 0.924 30 H 0.208 0.792 31 H 0.128 0.872 32 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -18.552 13.926 -1.277 23.233 hybrid contribution 1.409 -1.735 0.503 2.291 sum -17.143 12.191 -0.775 21.050 Atomic orbital electron populations 1.20896 0.88319 1.04173 1.03577 1.20494 0.98084 0.92413 0.96187 1.21287 0.92634 0.99266 1.00266 1.21333 0.95453 0.95844 0.98877 1.18062 0.86010 0.95724 1.05936 1.26435 0.98211 0.90191 1.03232 1.66309 1.05228 1.31927 1.16205 1.20665 0.90098 0.95655 0.98715 1.17732 0.91170 0.89561 0.96508 1.21239 1.14708 1.08519 1.11334 0.93548 1.25851 0.94721 0.99080 0.99519 1.70061 1.20041 1.27811 1.39023 0.85393 0.78278 0.78430 0.78907 1.19687 1.19959 1.19618 1.27002 1.04197 0.95013 1.14273 1.83863 0.97343 1.11176 1.70970 1.21331 0.95185 0.97058 0.97602 1.21252 0.92543 0.99546 1.01079 0.89708 0.90681 0.89689 0.81986 0.84364 0.97484 0.95640 0.92446 0.79187 0.87195 0.83784 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 71.23 0.71 -0.50 16 2 C -0.07 -1.29 5.89 -19.81 -0.12 -1.41 16 3 C -0.12 -2.11 9.68 22.23 0.22 -1.89 16 4 C -0.09 -2.24 9.61 22.52 0.22 -2.02 16 5 C -0.05 -1.70 5.87 -20.09 -0.12 -1.82 16 6 C 0.09 3.61 7.35 87.48 0.64 4.25 16 7 N -0.48 -22.88 9.93 -177.79 -1.77 -24.65 16 8 C 0.08 3.86 5.99 41.61 0.25 4.11 16 9 C 0.09 5.09 5.45 29.10 0.16 5.25 16 10 C -0.52 -31.53 8.97 25.60 0.23 -31.30 16 11 H 0.05 2.87 7.72 -2.91 -0.02 2.85 16 12 C 0.01 0.37 5.46 84.65 0.46 0.84 16 13 N -0.93 -57.16 13.29 21.45 0.28 -56.88 16 14 Si 0.97 46.31 29.54 68.60 2.03 48.34 16 15 H -0.27 -12.93 7.11 99.48 0.71 -12.22 16 16 H -0.27 -12.69 7.11 99.48 0.71 -11.98 16 17 H -0.27 -12.37 7.11 99.48 0.71 -11.66 16 18 C -0.27 -10.50 11.02 66.79 0.74 -9.77 16 19 S 0.11 3.49 22.40 -56.49 -1.27 2.23 16 20 C -0.09 -2.84 9.68 22.52 0.22 -2.62 16 21 C -0.13 -2.94 9.68 22.23 0.22 -2.72 16 22 H 0.08 0.75 8.14 -2.39 -0.02 0.73 16 23 H 0.07 0.73 8.08 -2.39 -0.02 0.71 16 24 H 0.08 0.65 8.08 -2.39 -0.02 0.63 16 25 H 0.16 1.73 8.06 -2.91 -0.02 1.71 16 26 H 0.14 2.75 7.30 -2.91 -0.02 2.73 16 27 H 0.01 0.43 8.14 -2.38 -0.02 0.41 16 28 H 0.03 1.45 8.01 -2.39 -0.02 1.43 16 29 H 0.27 15.27 8.31 -92.71 -0.77 14.50 16 30 H 0.19 6.52 8.06 -2.91 -0.02 6.50 16 31 H 0.11 4.02 7.82 -2.91 -0.02 4.00 16 32 H 0.14 2.71 8.06 -2.91 -0.02 2.69 16 Total: -1.00 -71.77 296.90 4.22 -67.56 By element: Atomic # 1 Polarization: 1.90 SS G_CDS: 1.12 Total: 3.01 kcal Atomic # 6 Polarization: -43.43 SS G_CDS: 3.82 Total: -39.61 kcal Atomic # 7 Polarization: -80.04 SS G_CDS: -1.48 Total: -81.52 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Atomic # 16 Polarization: 3.49 SS G_CDS: -1.27 Total: 2.23 kcal Total: -71.77 4.22 -67.56 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259240239.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.514 kcal (2) G-P(sol) polarization free energy of solvation -71.774 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 30.740 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.218 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.556 kcal (6) G-S(sol) free energy of system = (1) + (5) 34.958 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds