Wall clock time and date at job start Mon Mar 30 2020 07:10:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 C 1.38395 * 119.85152 * 2 1 4 4 C 1.37919 * 120.14954 * 180.27478 * 3 2 1 5 5 C 1.39647 * 119.84990 * 359.72882 * 4 3 2 6 6 C 1.47763 * 120.14980 * 179.97438 * 5 4 3 7 7 N 1.29840 * 125.06389 * 359.74342 * 6 5 4 8 8 C 1.32768 * 116.00826 * 179.77980 * 7 6 5 9 9 C 1.41150 * 122.77082 * 180.27517 * 8 7 6 10 10 H 1.08008 * 119.99913 * 174.32654 * 9 8 7 11 11 C 1.39653 * 120.00629 * 354.32159 * 9 8 7 12 12 N 1.31054 * 119.99863 * 6.20048 * 11 9 8 13 13 Si 1.86798 * 120.00329 * 186.20459 * 11 9 8 14 14 H 1.48499 * 109.47345 * 94.98281 * 13 11 9 15 15 H 1.48503 * 109.47222 * 214.98533 * 13 11 9 16 16 H 1.48503 * 109.46987 * 334.98005 * 13 11 9 17 17 C 1.37979 * 114.44916 * 0.50939 * 8 7 6 18 18 S 1.70992 * 108.89501 * 359.73064 * 17 8 7 19 19 C 1.39598 * 119.70001 * 359.97438 * 5 4 3 20 20 C 1.37967 * 119.85368 * 0.02562 * 19 5 4 21 21 C 1.50699 * 119.92621 * 179.97438 * 20 19 5 22 22 H 1.09001 * 109.47045 * 270.27374 * 1 2 3 23 23 H 1.08999 * 109.47382 * 30.26853 * 1 2 3 24 24 H 1.08998 * 109.47550 * 150.27306 * 1 2 3 25 25 H 1.08000 * 119.92716 * 359.97438 * 3 2 1 26 26 H 1.08005 * 120.07661 * 179.75238 * 4 3 2 27 27 H 0.96993 * 119.99871 * 179.97438 * 12 11 9 28 28 H 1.08001 * 125.55062 * 179.75547 * 17 8 7 29 29 H 1.08010 * 120.07542 * 179.97438 * 19 5 4 30 30 H 1.08998 * 109.47189 * 90.00010 * 21 20 19 31 31 H 1.08999 * 109.47102 * 329.99633 * 21 20 19 32 32 H 1.09000 * 109.46851 * 210.00162 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1958 1.2003 0.0000 4 6 3.5750 1.2075 -0.0057 5 6 4.2763 -0.0001 -0.0058 6 6 5.7540 -0.0001 -0.0125 7 7 6.4999 1.0626 -0.0233 8 6 7.8110 0.8536 -0.0232 9 6 8.7523 1.9054 -0.0285 10 1 9.8061 1.6875 0.0643 11 6 8.3212 3.2278 -0.1539 12 7 7.0399 3.5030 -0.1443 13 14 9.5708 4.6044 -0.3353 14 1 9.7700 4.9055 -1.7758 15 1 9.0739 5.8188 0.3601 16 1 10.8618 4.1834 0.2656 17 6 8.1773 -0.4767 -0.0226 18 16 6.7645 -1.4399 -0.0145 19 6 3.5752 -1.2072 0.0005 20 6 2.1955 -1.2000 0.0062 21 6 1.4369 -2.5021 0.0124 22 1 -0.3633 0.0049 1.0277 23 1 -0.3634 0.8875 -0.5180 24 1 -0.3634 -0.8924 -0.5096 25 1 1.6522 2.1335 -0.0004 26 1 4.1114 2.1449 -0.0098 27 1 6.7405 4.4215 -0.2310 28 1 9.1911 -0.8488 -0.0261 29 1 4.1115 -2.1447 0.0001 30 1 1.2583 -2.8136 1.0415 31 1 2.0209 -3.2652 -0.5021 32 1 0.4830 -2.3692 -0.4979 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259285248.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:10:13 Heat of formation + Delta-G solvation = 31.563273 kcal Electronic energy + Delta-G solvation = -16087.750955 eV Core-core repulsion = 13524.414747 eV Total energy + Delta-G solvation = -2563.336208 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.59147 -39.53589 -35.41796 -34.37386 -33.12948 -31.06928 -28.63944 -27.72536 -27.20518 -24.47068 -23.03848 -21.96333 -20.20042 -19.40381 -17.58207 -17.06438 -16.53155 -16.29408 -15.85923 -15.26210 -15.10406 -14.73704 -14.38248 -13.94796 -13.63701 -13.50413 -13.47626 -13.18652 -13.02941 -12.72851 -12.61441 -12.58215 -12.27546 -11.99449 -11.73534 -11.57860 -11.23678 -10.27143 -10.02206 -9.74832 -9.59811 -8.83046 -8.49968 -6.44806 -0.30305 0.48754 0.86399 0.96361 1.35089 1.40805 1.50507 1.65897 2.20983 2.32095 2.89935 3.42852 3.46605 3.95515 4.01440 4.15331 4.37569 4.48181 4.56357 4.81686 4.84983 4.90322 4.95467 5.00935 5.04829 5.09882 5.23274 5.28400 5.37422 5.46106 5.59723 5.68534 5.74156 6.11359 6.13668 6.49809 6.82766 7.61460 8.40202 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.027009 B = 0.005848 C = 0.004826 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1036.430808 B = 4786.827329 C = 5800.077873 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.081 4.081 3 C -0.121 4.121 4 C -0.098 4.098 5 C -0.039 4.039 6 C 0.075 3.925 7 N -0.432 5.432 8 C 0.196 3.804 9 C -0.473 4.473 10 H 0.084 0.916 11 C 0.027 3.973 12 N -0.784 5.784 13 Si 0.994 3.006 14 H -0.263 1.263 15 H -0.265 1.265 16 H -0.257 1.257 17 C -0.487 4.487 18 S 0.048 5.952 19 C -0.106 4.106 20 C -0.091 4.091 21 C -0.111 4.111 22 H 0.084 0.916 23 H 0.075 0.925 24 H 0.088 0.912 25 H 0.145 0.855 26 H 0.108 0.892 27 H 0.281 0.719 28 H 0.143 0.857 29 H 0.128 0.872 30 H 0.083 0.917 31 H 0.070 0.930 32 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.741 -5.610 -0.062 14.843 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.082 4.082 3 C -0.139 4.139 4 C -0.119 4.119 5 C -0.043 4.043 6 C -0.204 4.204 7 N -0.147 5.147 8 C 0.072 3.928 9 C -0.507 4.507 10 H 0.103 0.897 11 C -0.193 4.193 12 N -0.407 5.407 13 Si 0.813 3.187 14 H -0.188 1.188 15 H -0.189 1.189 16 H -0.180 1.180 17 C -0.626 4.626 18 S 0.299 5.701 19 C -0.127 4.127 20 C -0.091 4.091 21 C -0.167 4.167 22 H 0.102 0.898 23 H 0.094 0.906 24 H 0.107 0.893 25 H 0.162 0.838 26 H 0.126 0.874 27 H 0.091 0.909 28 H 0.161 0.839 29 H 0.146 0.854 30 H 0.101 0.899 31 H 0.089 0.911 32 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.218 -5.991 -0.071 15.429 hybrid contribution 2.127 1.470 -0.048 2.586 sum -12.092 -4.520 -0.119 12.909 Atomic orbital electron populations 1.20933 0.88127 1.04203 1.03522 1.20282 0.98034 0.91644 0.98204 1.21194 0.92382 0.99301 1.01019 1.21316 0.95075 0.97013 0.98541 1.18181 0.86794 0.95403 1.03910 1.26662 0.98166 0.90864 1.04660 1.67439 1.04858 1.28052 1.14393 1.18346 0.88341 0.92318 0.93808 1.19313 0.93797 0.90721 1.46836 0.89742 1.26939 0.98078 1.02197 0.92041 1.70218 1.16662 1.21422 1.32414 0.85033 0.78174 0.76133 0.79327 1.18787 1.18889 1.18050 1.25623 1.01473 0.96092 1.39398 1.81906 0.98764 1.13519 1.75909 1.21171 0.94782 0.95865 1.00865 1.19982 0.92142 0.97030 0.99927 1.20915 1.00355 0.91934 1.03528 0.89779 0.90621 0.89321 0.83757 0.87413 0.90881 0.83949 0.85413 0.89859 0.91128 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.73 9.59 71.23 0.68 -1.05 16 2 C -0.08 -2.03 5.89 -19.80 -0.12 -2.14 16 3 C -0.12 -3.68 9.68 22.23 0.22 -3.46 16 4 C -0.10 -3.97 9.68 22.53 0.22 -3.75 16 5 C -0.04 -1.66 5.87 -20.09 -0.12 -1.78 16 6 C 0.07 3.80 7.30 87.51 0.64 4.44 16 7 N -0.43 -25.30 8.01 -182.94 -1.46 -26.76 16 8 C 0.20 11.76 6.45 39.66 0.26 12.02 16 9 C -0.47 -27.70 9.22 23.33 0.22 -27.48 16 10 H 0.08 4.71 7.85 -2.91 -0.02 4.69 16 11 C 0.03 1.44 5.48 85.15 0.47 1.91 16 12 N -0.78 -44.10 11.72 21.78 0.26 -43.84 16 13 Si 0.99 40.39 29.56 68.60 2.03 42.42 16 14 H -0.26 -10.32 7.11 99.48 0.71 -9.61 16 15 H -0.26 -10.12 7.11 99.48 0.71 -9.42 16 16 H -0.26 -10.10 7.11 99.48 0.71 -9.39 16 17 C -0.49 -26.52 10.99 67.76 0.74 -25.77 16 18 S 0.05 2.19 22.07 -56.49 -1.25 0.95 16 19 C -0.11 -3.61 9.25 22.53 0.21 -3.40 16 20 C -0.09 -2.40 5.87 -19.90 -0.12 -2.51 16 21 C -0.11 -1.91 9.60 71.24 0.68 -1.23 16 22 H 0.08 1.12 8.14 -2.39 -0.02 1.10 16 23 H 0.07 1.04 8.08 -2.39 -0.02 1.02 16 24 H 0.09 1.05 5.92 -2.39 -0.01 1.04 16 25 H 0.14 3.58 8.06 -2.91 -0.02 3.56 16 26 H 0.11 5.05 7.80 -2.91 -0.02 5.03 16 27 H 0.28 14.22 8.30 -92.71 -0.77 13.46 16 28 H 0.14 7.37 8.06 -2.91 -0.02 7.34 16 29 H 0.13 4.06 7.27 -2.91 -0.02 4.04 16 30 H 0.08 1.24 8.14 -2.39 -0.02 1.22 16 31 H 0.07 1.16 8.08 -2.39 -0.02 1.14 16 32 H 0.09 1.16 5.92 -2.39 -0.01 1.15 16 Total: -1.00 -69.78 289.18 4.68 -65.09 By element: Atomic # 1 Polarization: 15.22 SS G_CDS: 1.13 Total: 16.35 kcal Atomic # 6 Polarization: -58.19 SS G_CDS: 3.98 Total: -54.21 kcal Atomic # 7 Polarization: -69.40 SS G_CDS: -1.21 Total: -70.60 kcal Atomic # 14 Polarization: 40.39 SS G_CDS: 2.03 Total: 42.42 kcal Atomic # 16 Polarization: 2.19 SS G_CDS: -1.25 Total: 0.95 kcal Total: -69.78 4.68 -65.09 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259285248.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.658 kcal (2) G-P(sol) polarization free energy of solvation -69.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.095 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.563 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds