Wall clock time and date at job start Mon Mar 30 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38348 * 119.94062 * 2 1 4 4 C 1.38305 * 120.25419 * 180.02562 * 3 2 1 5 5 C 1.38035 * 120.12026 * 359.97438 * 4 3 2 6 6 C 1.39342 * 119.87515 * 359.97438 * 5 4 3 7 7 C 1.48351 * 120.12152 * 179.97438 * 6 5 4 8 8 C 1.34834 * 122.96209 * 4.99756 * 7 6 5 9 9 S 1.76176 * 107.87332 * 179.97438 * 8 7 6 10 10 C 1.70916 * 90.43777 * 0.02562 * 9 8 7 11 11 C 1.50698 * 124.75797 * 180.26646 * 10 9 8 12 12 C 1.50706 * 109.47058 * 269.69623 * 11 10 9 13 13 H 1.07997 * 119.99594 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99712 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00261 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99684 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47074 * 90.00366 * 16 14 12 18 18 H 1.48500 * 109.47131 * 210.00254 * 16 14 12 19 19 H 1.48500 * 109.46947 * 330.00246 * 16 14 12 20 20 N 1.28804 * 110.48809 * 359.97438 * 10 9 8 21 21 C 1.37990 * 119.93711 * 180.27283 * 2 1 3 22 22 H 1.09007 * 109.46700 * 90.00109 * 1 2 3 23 23 H 1.08996 * 109.47304 * 209.99847 * 1 2 3 24 24 H 1.08998 * 109.47304 * 330.00883 * 1 2 3 25 25 H 1.08001 * 119.87381 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.93941 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.05739 * 180.02562 * 5 4 3 28 28 H 1.07997 * 126.06713 * 359.97438 * 8 7 6 29 29 H 1.09006 * 109.46742 * 29.69526 * 11 10 9 30 30 H 1.09001 * 109.47362 * 149.69593 * 11 10 9 31 31 H 0.97004 * 120.00170 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.06648 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2064 -0.0005 5 6 4.2797 0.0163 -0.0005 6 6 3.5895 -1.1942 0.0005 7 6 4.3354 -2.4765 0.0000 8 6 5.6786 -2.5439 0.0970 9 16 6.1389 -4.2441 0.0576 10 6 4.4975 -4.6987 -0.0849 11 6 4.0045 -6.1198 -0.1777 12 6 3.9408 -6.5359 -1.6248 13 1 4.2289 -5.8409 -2.3996 14 6 3.5158 -7.8041 -1.9593 15 7 3.1655 -8.6505 -1.0156 16 14 3.4375 -8.3201 -3.7529 17 1 4.7362 -8.9190 -4.1528 18 1 2.3547 -9.3202 -3.9335 19 1 3.1594 -7.1313 -4.5983 20 7 3.7404 -3.6567 -0.0958 21 6 2.1956 -1.1958 -0.0057 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6544 2.1324 -0.0004 26 1 4.1143 2.1452 -0.0010 27 1 5.3597 0.0234 -0.0005 28 1 6.3527 -1.7047 0.1835 29 1 4.6881 -6.7772 0.3597 30 1 3.0106 -6.1892 0.2644 31 1 2.8660 -9.5426 -1.2510 32 1 1.6556 -2.1311 -0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259286576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:15 Heat of formation + Delta-G solvation = 49.125804 kcal Electronic energy + Delta-G solvation = -15728.756299 eV Core-core repulsion = 13166.181659 eV Total energy + Delta-G solvation = -2562.574640 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.77467 -38.33447 -33.72948 -32.84377 -31.56436 -29.90346 -28.02662 -26.58301 -24.67632 -23.27471 -21.87485 -20.50173 -18.86143 -17.37973 -16.47897 -16.36971 -15.18466 -14.72064 -14.63198 -14.12927 -14.05190 -13.56843 -13.32746 -12.91023 -12.54061 -12.27329 -12.17553 -11.83881 -11.49977 -11.38120 -10.94700 -10.86661 -10.73093 -10.69088 -10.09417 -9.71580 -9.12770 -8.87695 -8.73195 -8.62658 -8.51125 -7.68005 -6.15044 -4.19702 0.91640 1.48884 1.77060 2.01222 2.42765 3.27122 3.32794 3.35868 3.41512 4.12063 4.37588 4.56597 4.87126 4.90161 5.17097 5.21428 5.32306 5.41405 5.48962 5.62103 5.67566 5.79205 5.83478 6.01815 6.15246 6.24279 6.46702 6.60728 6.74310 6.81294 7.08624 7.25344 7.35809 7.78857 8.09587 8.48337 8.81894 9.44344 10.95120 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.005156 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.297816 B = 5429.667108 C = 6208.030185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.091 4.091 3 C -0.123 4.123 4 C -0.120 4.120 5 C -0.114 4.114 6 C -0.004 4.004 7 C 0.107 3.893 8 C -0.287 4.287 9 S 0.095 5.905 10 C 0.128 3.872 11 C 0.084 3.916 12 C -0.514 4.514 13 H 0.059 0.941 14 C 0.063 3.937 15 N -0.891 5.891 16 Si 0.901 3.099 17 H -0.278 1.278 18 H -0.284 1.284 19 H -0.272 1.272 20 N -0.488 5.488 21 C -0.086 4.086 22 H 0.069 0.931 23 H 0.068 0.932 24 H 0.063 0.937 25 H 0.119 0.881 26 H 0.122 0.878 27 H 0.122 0.878 28 H 0.167 0.833 29 H 0.044 0.956 30 H 0.055 0.945 31 H 0.265 0.735 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.061 16.439 3.118 16.765 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.091 4.091 3 C -0.142 4.142 4 C -0.138 4.138 5 C -0.133 4.133 6 C -0.007 4.007 7 C -0.025 4.025 8 C -0.427 4.427 9 S 0.353 5.647 10 C -0.150 4.150 11 C 0.043 3.957 12 C -0.554 4.554 13 H 0.077 0.923 14 C -0.139 4.139 15 N -0.529 5.529 16 Si 0.728 3.272 17 H -0.204 1.204 18 H -0.210 1.210 19 H -0.197 1.197 20 N -0.201 5.201 21 C -0.105 4.105 22 H 0.088 0.912 23 H 0.087 0.913 24 H 0.082 0.918 25 H 0.137 0.863 26 H 0.140 0.860 27 H 0.140 0.860 28 H 0.184 0.816 29 H 0.062 0.938 30 H 0.073 0.927 31 H 0.075 0.925 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.407 15.583 3.167 15.964 hybrid contribution -0.373 0.486 -1.012 1.183 sum 1.035 16.069 2.155 16.246 Atomic orbital electron populations 1.20781 0.91154 1.02683 1.02362 1.19889 0.96175 0.92945 1.00107 1.21035 0.94239 0.97313 1.01606 1.20948 0.94202 0.97534 1.01165 1.21094 0.99726 0.91467 1.00995 1.18153 0.92762 0.89834 0.99949 1.18829 0.89454 0.91867 1.02301 1.26739 0.98766 1.00303 1.16868 1.83897 1.14156 0.98367 1.68322 1.28135 0.90923 1.01120 0.94862 1.18186 0.98080 0.80382 0.99023 1.20893 1.45735 0.98280 0.90465 0.92285 1.24949 0.94788 0.96229 0.97940 1.69937 1.43951 1.06620 1.32397 0.86444 0.77872 0.78485 0.84422 1.20393 1.20952 1.19726 1.66259 1.37862 0.96987 1.18991 1.21270 0.93241 0.98235 0.97791 0.91189 0.91300 0.91773 0.86333 0.86048 0.86036 0.81564 0.93751 0.92695 0.92526 0.84690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.19 10.01 36.00 0.36 -0.83 16 2 C -0.09 -1.20 5.87 -104.68 -0.61 -1.82 16 3 C -0.12 -1.44 9.69 -39.52 -0.38 -1.82 16 4 C -0.12 -1.40 10.03 -39.63 -0.40 -1.80 16 5 C -0.11 -1.54 9.48 -39.25 -0.37 -1.91 16 6 C 0.00 -0.07 5.88 -104.89 -0.62 -0.69 16 7 C 0.11 2.05 6.64 -84.62 -0.56 1.49 16 8 C -0.29 -4.87 10.62 29.52 0.31 -4.55 16 9 S 0.09 1.75 23.16 -107.50 -2.49 -0.74 16 10 C 0.13 2.90 6.55 -13.55 -0.09 2.82 16 11 C 0.08 2.14 5.55 -29.03 -0.16 1.98 16 12 C -0.51 -14.26 9.09 -34.44 -0.31 -14.57 16 13 H 0.06 1.65 7.74 -52.49 -0.41 1.24 16 14 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 15 N -0.89 -25.63 13.29 55.43 0.74 -24.89 16 16 Si 0.90 21.32 29.54 -169.99 -5.02 16.30 16 17 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 18 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 19 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 20 N -0.49 -10.86 9.93 -8.42 -0.08 -10.94 16 21 C -0.09 -1.40 9.29 -39.24 -0.36 -1.76 16 22 H 0.07 0.69 8.14 -51.92 -0.42 0.26 16 23 H 0.07 0.72 8.08 -51.93 -0.42 0.30 16 24 H 0.06 0.55 8.08 -51.93 -0.42 0.13 16 25 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 26 H 0.12 1.06 8.06 -52.49 -0.42 0.64 16 27 H 0.12 1.40 6.69 -52.48 -0.35 1.05 16 28 H 0.17 2.21 6.92 -52.49 -0.36 1.85 16 29 H 0.04 1.14 8.14 -51.93 -0.42 0.72 16 30 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 31 H 0.27 7.18 8.31 -40.82 -0.34 6.84 16 32 H 0.14 2.36 7.71 -52.49 -0.40 1.95 16 LS Contribution 295.49 15.07 4.45 4.45 Total: -1.00 -29.89 295.49 -9.32 -39.20 By element: Atomic # 1 Polarization: 2.03 SS G_CDS: -3.61 Total: -1.58 kcal Atomic # 6 Polarization: -18.51 SS G_CDS: -3.30 Total: -21.81 kcal Atomic # 7 Polarization: -36.48 SS G_CDS: 0.65 Total: -35.83 kcal Atomic # 14 Polarization: 21.32 SS G_CDS: -5.02 Total: 16.30 kcal Atomic # 16 Polarization: 1.75 SS G_CDS: -2.49 Total: -0.74 kcal Total LS contribution 4.45 Total: 4.45 kcal Total: -29.89 -9.32 -39.20 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259286576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.329 kcal (2) G-P(sol) polarization free energy of solvation -29.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 58.442 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.316 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.203 kcal (6) G-S(sol) free energy of system = (1) + (5) 49.126 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds