Wall clock time and date at job start Mon Mar 30 2020 07:08:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38348 * 119.94062 * 2 1 4 4 C 1.38305 * 120.25419 * 180.02562 * 3 2 1 5 5 C 1.38035 * 120.12026 * 359.97438 * 4 3 2 6 6 C 1.39342 * 119.87515 * 359.97438 * 5 4 3 7 7 C 1.48351 * 120.12152 * 179.97438 * 6 5 4 8 8 C 1.34834 * 122.96209 * 4.99756 * 7 6 5 9 9 S 1.76176 * 107.87332 * 179.97438 * 8 7 6 10 10 C 1.70916 * 90.43777 * 0.02562 * 9 8 7 11 11 C 1.50698 * 124.75797 * 180.26646 * 10 9 8 12 12 C 1.50706 * 109.47058 * 269.69623 * 11 10 9 13 13 H 1.07997 * 119.99594 * 0.02562 * 12 11 10 14 14 C 1.37873 * 119.99712 * 179.97438 * 12 11 10 15 15 N 1.31513 * 120.00261 * 0.02562 * 14 12 11 16 16 Si 1.86805 * 119.99684 * 180.02562 * 14 12 11 17 17 H 1.48499 * 109.47074 * 90.00366 * 16 14 12 18 18 H 1.48500 * 109.47131 * 210.00254 * 16 14 12 19 19 H 1.48500 * 109.46947 * 330.00246 * 16 14 12 20 20 N 1.28804 * 110.48809 * 359.97438 * 10 9 8 21 21 C 1.37990 * 119.93711 * 180.27283 * 2 1 3 22 22 H 1.09007 * 109.46700 * 90.00109 * 1 2 3 23 23 H 1.08996 * 109.47304 * 209.99847 * 1 2 3 24 24 H 1.08998 * 109.47304 * 330.00883 * 1 2 3 25 25 H 1.08001 * 119.87381 * 359.97438 * 3 2 1 26 26 H 1.08002 * 119.93941 * 179.97438 * 4 3 2 27 27 H 1.08005 * 120.05739 * 180.02562 * 5 4 3 28 28 H 1.07997 * 126.06713 * 359.97438 * 8 7 6 29 29 H 1.09006 * 109.46742 * 29.69526 * 11 10 9 30 30 H 1.09001 * 109.47362 * 149.69593 * 11 10 9 31 31 H 0.97004 * 120.00170 * 179.97438 * 15 14 12 32 32 H 1.07999 * 120.06648 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2064 -0.0005 5 6 4.2797 0.0163 -0.0005 6 6 3.5895 -1.1942 0.0005 7 6 4.3354 -2.4765 0.0000 8 6 5.6786 -2.5439 0.0970 9 16 6.1389 -4.2441 0.0576 10 6 4.4975 -4.6987 -0.0849 11 6 4.0045 -6.1198 -0.1777 12 6 3.9408 -6.5359 -1.6248 13 1 4.2289 -5.8409 -2.3996 14 6 3.5158 -7.8041 -1.9593 15 7 3.1655 -8.6505 -1.0156 16 14 3.4375 -8.3201 -3.7529 17 1 4.7362 -8.9190 -4.1528 18 1 2.3547 -9.3202 -3.9335 19 1 3.1594 -7.1313 -4.5983 20 7 3.7404 -3.6567 -0.0958 21 6 2.1956 -1.1958 -0.0057 22 1 -0.3633 0.0000 -1.0278 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3634 0.8900 0.5137 25 1 1.6544 2.1324 -0.0004 26 1 4.1143 2.1452 -0.0010 27 1 5.3597 0.0234 -0.0005 28 1 6.3527 -1.7047 0.1835 29 1 4.6881 -6.7772 0.3597 30 1 3.0106 -6.1892 0.2644 31 1 2.8660 -9.5426 -1.2510 32 1 1.6556 -2.1311 -0.0097 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259286576.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:15 Heat of formation + Delta-G solvation = 32.807710 kcal Electronic energy + Delta-G solvation = -15729.463904 eV Core-core repulsion = 13166.181659 eV Total energy + Delta-G solvation = -2563.282246 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.09034 -39.57988 -35.63428 -34.12103 -32.87518 -31.40231 -29.59028 -27.60691 -26.44000 -24.79505 -23.06376 -21.85291 -20.30378 -18.83226 -18.58150 -17.48294 -16.71892 -16.18567 -15.77481 -15.63573 -15.44236 -14.62530 -14.60086 -14.35175 -14.05126 -13.94055 -13.30801 -13.04875 -12.98810 -12.77753 -12.66676 -12.59610 -12.09380 -11.94253 -11.89296 -11.69620 -10.68871 -10.47062 -10.40079 -10.29757 -9.64338 -9.00209 -8.27753 -6.41616 -0.38245 0.42583 0.48304 0.51713 0.88906 1.38607 1.40035 1.51344 2.00297 2.37826 2.97964 3.03900 3.20735 3.84302 4.00129 4.10615 4.25000 4.31710 4.45283 4.49590 4.56828 4.79615 4.81072 4.94179 5.04447 5.11067 5.19239 5.27573 5.30063 5.54335 5.61637 5.65338 5.70466 5.99039 6.09549 6.64979 6.94328 7.26738 8.82320 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022247 B = 0.005156 C = 0.004509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1258.297816 B = 5429.667108 C = 6208.030185 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.097 4.097 3 C -0.117 4.117 4 C -0.112 4.112 5 C -0.114 4.114 6 C -0.035 4.035 7 C 0.081 3.919 8 C -0.263 4.263 9 S 0.144 5.856 10 C 0.077 3.923 11 C 0.095 3.905 12 C -0.532 4.532 13 H 0.050 0.950 14 C 0.014 3.986 15 N -0.923 5.923 16 Si 0.968 3.032 17 H -0.264 1.264 18 H -0.276 1.276 19 H -0.272 1.272 20 N -0.511 5.511 21 C -0.117 4.117 22 H 0.075 0.925 23 H 0.057 0.943 24 H 0.090 0.910 25 H 0.154 0.846 26 H 0.161 0.839 27 H 0.145 0.855 28 H 0.212 0.788 29 H 0.033 0.967 30 H 0.019 0.981 31 H 0.270 0.730 32 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.288 19.629 2.341 19.900 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.097 4.097 3 C -0.135 4.135 4 C -0.130 4.130 5 C -0.133 4.133 6 C -0.037 4.037 7 C -0.050 4.050 8 C -0.402 4.402 9 S 0.400 5.600 10 C -0.201 4.201 11 C 0.054 3.946 12 C -0.571 4.571 13 H 0.069 0.931 14 C -0.185 4.185 15 N -0.562 5.562 16 Si 0.792 3.208 17 H -0.189 1.189 18 H -0.201 1.201 19 H -0.197 1.197 20 N -0.226 5.226 21 C -0.137 4.137 22 H 0.094 0.906 23 H 0.076 0.924 24 H 0.109 0.891 25 H 0.172 0.828 26 H 0.179 0.821 27 H 0.163 0.837 28 H 0.229 0.771 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.079 0.921 32 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 2.631 18.776 2.397 19.111 hybrid contribution -0.748 -0.347 -0.708 1.087 sum 1.883 18.429 1.689 18.602 Atomic orbital electron populations 1.20831 0.89631 1.03486 1.02981 1.20176 0.97484 0.92582 0.99491 1.21489 0.94747 0.97778 0.99483 1.21430 0.94348 0.98306 0.98903 1.21377 1.00957 0.90726 1.00255 1.18306 0.92955 0.89958 1.02522 1.19271 0.90719 0.91751 1.03219 1.27258 0.98519 1.00619 1.13827 1.83521 1.10158 0.99223 1.67061 1.27494 0.93911 0.99960 0.98745 1.17770 0.96135 0.82884 0.97781 1.21132 1.46072 0.98577 0.91369 0.93126 1.25833 0.94102 0.96103 1.02503 1.70045 1.44479 1.07073 1.34586 0.85403 0.78558 0.78046 0.78807 1.18914 1.20104 1.19726 1.66189 1.39692 0.98185 1.18551 1.21198 0.93658 0.98321 1.00475 0.90593 0.92368 0.89118 0.82817 0.82128 0.83737 0.77122 0.94898 0.96242 0.92121 0.88001 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.25 10.01 71.23 0.71 -1.53 16 2 C -0.10 -2.47 5.87 -19.90 -0.12 -2.58 16 3 C -0.12 -2.30 9.69 22.31 0.22 -2.08 16 4 C -0.11 -2.12 10.03 22.24 0.22 -1.89 16 5 C -0.11 -2.74 9.48 22.49 0.21 -2.53 16 6 C -0.03 -1.15 5.88 -20.04 -0.12 -1.27 16 7 C 0.08 3.11 6.64 40.95 0.27 3.38 16 8 C -0.26 -8.42 10.62 67.04 0.71 -7.71 16 9 S 0.14 5.25 23.16 -56.49 -1.31 3.94 16 10 C 0.08 3.65 6.55 88.55 0.58 4.23 16 11 C 0.09 5.18 5.55 29.10 0.16 5.34 16 12 C -0.53 -30.86 9.09 25.60 0.23 -30.62 16 13 H 0.05 2.94 7.74 -2.91 -0.02 2.92 16 14 C 0.01 0.81 5.46 84.65 0.46 1.27 16 15 N -0.92 -54.86 13.29 21.45 0.28 -54.58 16 16 Si 0.97 44.38 29.54 68.60 2.03 46.41 16 17 H -0.26 -11.47 7.11 99.48 0.71 -10.77 16 18 H -0.28 -12.21 7.11 99.48 0.71 -11.50 16 19 H -0.27 -12.39 7.11 99.48 0.71 -11.68 16 20 N -0.51 -23.98 9.93 -180.57 -1.79 -25.77 16 21 C -0.12 -3.92 9.29 22.49 0.21 -3.71 16 22 H 0.08 1.41 8.14 -2.38 -0.02 1.40 16 23 H 0.06 1.26 8.08 -2.39 -0.02 1.24 16 24 H 0.09 1.30 8.08 -2.39 -0.02 1.28 16 25 H 0.15 1.95 8.06 -2.91 -0.02 1.92 16 26 H 0.16 1.80 8.06 -2.91 -0.02 1.78 16 27 H 0.14 2.68 6.69 -2.91 -0.02 2.66 16 28 H 0.21 4.67 6.92 -2.91 -0.02 4.65 16 29 H 0.03 1.81 8.14 -2.38 -0.02 1.79 16 30 H 0.02 1.16 8.14 -2.39 -0.02 1.14 16 31 H 0.27 14.95 8.31 -92.71 -0.77 14.18 16 32 H 0.10 3.95 7.71 -2.91 -0.02 3.93 16 Total: -1.00 -68.86 295.49 4.09 -64.77 By element: Atomic # 1 Polarization: 3.82 SS G_CDS: 1.12 Total: 4.94 kcal Atomic # 6 Polarization: -43.46 SS G_CDS: 3.76 Total: -39.70 kcal Atomic # 7 Polarization: -78.84 SS G_CDS: -1.51 Total: -80.35 kcal Atomic # 14 Polarization: 44.38 SS G_CDS: 2.03 Total: 46.41 kcal Atomic # 16 Polarization: 5.25 SS G_CDS: -1.31 Total: 3.94 kcal Total: -68.86 4.09 -64.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259286576.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 97.573 kcal (2) G-P(sol) polarization free energy of solvation -68.857 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.716 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.092 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.765 kcal (6) G-S(sol) free energy of system = (1) + (5) 32.808 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds