Wall clock time and date at job start Mon Mar 30 2020 07:07:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38322 * 119.94271 * 2 1 4 4 C 1.38316 * 120.24531 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.94132 * 180.02562 * 4 3 2 6 6 C 1.38018 * 120.12054 * 0.02562 * 4 3 2 7 7 C 1.39340 * 119.87767 * 359.97438 * 6 4 3 8 8 C 1.48408 * 120.12099 * 180.02562 * 7 6 4 9 9 C 1.38035 * 121.16511 * 179.97438 * 8 7 6 10 10 C 1.39845 * 110.98918 * 180.02562 * 9 8 7 11 11 C 1.40174 * 127.94537 * 179.74129 * 10 9 8 12 12 H 1.08000 * 120.00639 * 359.97438 * 11 10 9 13 13 C 1.40187 * 119.99979 * 179.97438 * 11 10 9 14 14 N 1.30753 * 119.99500 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00139 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47160 * 59.99887 * 15 13 11 17 17 H 1.48498 * 109.47162 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46960 * 299.99908 * 15 13 11 19 19 S 1.77028 * 104.10552 * 0.02562 * 10 9 8 20 20 N 1.30663 * 121.16126 * 0.02583 * 8 7 6 21 21 C 1.38024 * 119.93895 * 180.27362 * 2 1 3 22 22 H 1.09000 * 109.46785 * 89.99658 * 1 2 3 23 23 H 1.08998 * 109.47311 * 209.99951 * 1 2 3 24 24 H 1.08996 * 109.47020 * 330.00636 * 1 2 3 25 25 H 1.08001 * 119.87663 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.47236 * 269.98349 * 5 4 3 27 27 H 1.08993 * 109.46791 * 29.98115 * 5 4 3 28 28 H 1.08997 * 109.47188 * 149.98186 * 5 4 3 29 29 H 1.08000 * 120.06639 * 179.97438 * 6 4 3 30 30 H 1.07999 * 124.50979 * 0.02562 * 9 8 7 31 31 H 0.97000 * 119.99983 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.05948 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1986 0.0000 4 6 3.5806 1.2059 0.0005 5 6 4.3258 2.5157 0.0011 6 6 4.2795 0.0158 0.0005 7 6 3.5891 -1.1946 0.0005 8 6 4.3352 -2.4775 0.0011 9 6 3.6733 -3.6888 0.0017 10 6 4.5788 -4.7545 0.0027 11 6 4.2946 -6.1271 0.0085 12 1 3.2693 -6.4663 0.0133 13 6 5.3413 -7.0596 0.0081 14 7 6.5826 -6.6490 0.0029 15 14 4.9626 -8.8888 0.0151 16 1 4.1729 -9.2354 -1.1937 17 1 6.2332 -9.6574 0.0141 18 1 4.1806 -9.2277 1.2312 19 16 6.1665 -3.9715 0.0036 20 7 5.6416 -2.4999 0.0021 21 6 2.1959 -1.1960 -0.0057 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6545 2.1322 0.0004 26 1 4.5062 2.8317 -1.0264 27 1 3.7316 3.2715 0.5146 28 1 5.2787 2.3914 0.5156 29 1 5.3595 0.0225 0.0005 30 1 2.5989 -3.7990 0.0013 31 1 7.3069 -7.2942 0.0030 32 1 1.6558 -2.1313 -0.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259317797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:59 Heat of formation + Delta-G solvation = 20.074875 kcal Electronic energy + Delta-G solvation = -15885.456509 eV Core-core repulsion = 13321.622126 eV Total energy + Delta-G solvation = -2563.834383 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.16573 -36.91108 -34.28844 -33.19027 -31.42190 -29.92935 -27.15791 -26.65503 -25.70913 -23.55587 -20.72306 -20.00470 -18.44952 -17.79412 -15.91207 -15.66012 -15.21723 -14.57935 -14.30504 -13.80160 -13.33820 -13.01575 -12.84864 -12.65047 -12.52755 -12.33602 -12.07405 -11.67239 -11.55330 -11.39622 -11.09965 -11.09066 -10.76769 -10.47133 -10.37225 -9.85488 -8.89669 -8.71992 -8.47750 -8.09799 -8.06819 -7.12480 -6.67358 -4.73449 1.65065 1.87154 2.60599 2.89426 2.93024 3.11252 3.52397 3.65540 3.79782 4.07343 4.54940 4.96128 5.09323 5.21552 5.37319 5.53715 5.58297 5.75705 5.81453 5.88955 6.00044 6.03789 6.09669 6.16514 6.54819 6.61146 6.75548 6.91275 7.02037 7.03172 7.16427 7.30184 7.48690 7.61478 7.86516 8.26271 8.37550 8.60320 9.76948 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.005024 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.735306 B = 5571.772544 C = 6367.054255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.092 4.092 3 C -0.135 4.135 4 C -0.094 4.094 5 C -0.108 4.108 6 C -0.102 4.102 7 C 0.014 3.986 8 C 0.149 3.851 9 C -0.372 4.372 10 C -0.007 4.007 11 C -0.372 4.372 12 H 0.094 0.906 13 C 0.054 3.946 14 N -0.776 5.776 15 Si 0.936 3.064 16 H -0.261 1.261 17 H -0.273 1.273 18 H -0.261 1.261 19 S 0.327 5.673 20 N -0.664 5.664 21 C -0.113 4.113 22 H 0.065 0.935 23 H 0.064 0.936 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.065 0.935 27 H 0.060 0.940 28 H 0.063 0.937 29 H 0.126 0.874 30 H 0.124 0.876 31 H 0.299 0.701 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.574 6.261 -0.028 8.383 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.092 4.092 3 C -0.155 4.155 4 C -0.094 4.094 5 C -0.165 4.165 6 C -0.122 4.122 7 C 0.010 3.990 8 C -0.016 4.016 9 C -0.404 4.404 10 C -0.134 4.134 11 C -0.411 4.411 12 H 0.112 0.888 13 C -0.168 4.168 14 N -0.404 5.404 15 Si 0.759 3.241 16 H -0.185 1.185 17 H -0.198 1.198 18 H -0.185 1.185 19 S 0.483 5.517 20 N -0.493 5.493 21 C -0.133 4.133 22 H 0.084 0.916 23 H 0.083 0.917 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.083 0.917 27 H 0.079 0.921 28 H 0.082 0.918 29 H 0.144 0.856 30 H 0.142 0.858 31 H 0.111 0.889 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -3.101 6.647 -0.025 7.335 hybrid contribution -2.041 -0.926 -0.014 2.242 sum -5.142 5.721 -0.039 7.692 Atomic orbital electron populations 1.20723 0.91666 1.02255 1.01855 1.19714 0.95553 0.93035 1.00920 1.20738 0.93401 0.96963 1.04349 1.19779 0.93716 0.95036 1.00911 1.20721 0.99841 0.94106 1.01816 1.21147 1.00305 0.90780 0.99993 1.18636 0.92143 0.91804 0.96465 1.18825 0.88547 0.92106 1.02101 1.20877 0.98844 0.90577 1.30131 1.23669 0.97137 0.96912 0.95668 1.19015 0.94960 0.88586 1.38493 0.88804 1.26232 0.94263 1.03526 0.92811 1.69066 1.00297 1.38637 1.32364 0.85861 0.79063 0.78853 0.80315 1.18483 1.19764 1.18487 1.81885 1.12203 0.88699 1.68962 1.71916 1.14694 1.25926 1.36792 1.21112 0.93380 0.97463 1.01354 0.91627 0.91710 0.92070 0.86951 0.91667 0.92083 0.91766 0.85584 0.85791 0.88891 0.85827 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.09 -1.47 5.88 -104.67 -0.61 -2.09 16 3 C -0.14 -2.08 9.35 -39.52 -0.37 -2.45 16 4 C -0.09 -1.56 5.87 -104.67 -0.61 -2.18 16 5 C -0.11 -1.38 10.01 36.01 0.36 -1.02 16 6 C -0.10 -2.05 9.25 -39.25 -0.36 -2.41 16 7 C 0.01 0.31 5.88 -104.89 -0.62 -0.31 16 8 C 0.15 3.80 6.57 -84.25 -0.55 3.24 16 9 C -0.37 -9.51 9.82 -39.06 -0.38 -9.89 16 10 C -0.01 -0.18 6.41 -38.25 -0.25 -0.42 16 11 C -0.37 -9.29 9.40 -38.12 -0.36 -9.65 16 12 H 0.09 2.19 7.85 -52.49 -0.41 1.78 16 13 C 0.05 1.25 5.50 -17.28 -0.10 1.15 16 14 N -0.78 -18.39 10.97 55.56 0.61 -17.78 16 15 Si 0.94 17.00 29.56 -169.99 -5.03 11.98 16 16 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 17 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.26 -4.68 7.11 56.52 0.40 -4.28 16 19 S 0.33 8.56 20.79 -107.50 -2.23 6.33 16 20 N -0.66 -17.63 10.49 26.19 0.27 -17.36 16 21 C -0.11 -2.14 9.10 -39.26 -0.36 -2.50 16 22 H 0.07 0.73 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.75 8.09 -51.93 -0.42 0.33 16 24 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.11 1.41 8.06 -52.49 -0.42 0.98 16 26 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 27 H 0.06 0.66 8.08 -51.93 -0.42 0.24 16 28 H 0.06 0.80 8.08 -51.93 -0.42 0.38 16 29 H 0.13 2.63 7.61 -52.49 -0.40 2.23 16 30 H 0.12 2.92 6.65 -52.49 -0.35 2.57 16 31 H 0.30 6.32 8.29 -40.82 -0.34 5.99 16 32 H 0.12 2.26 6.45 -52.49 -0.34 1.92 16 LS Contribution 289.69 15.07 4.37 4.37 Total: -1.00 -28.17 289.69 -9.44 -37.62 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: -3.58 Total: 4.32 kcal Atomic # 6 Polarization: -25.62 SS G_CDS: -3.85 Total: -29.47 kcal Atomic # 7 Polarization: -36.02 SS G_CDS: 0.88 Total: -35.14 kcal Atomic # 14 Polarization: 17.00 SS G_CDS: -5.03 Total: 11.98 kcal Atomic # 16 Polarization: 8.56 SS G_CDS: -2.23 Total: 6.33 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.17 -9.44 -37.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.691 kcal (2) G-P(sol) polarization free energy of solvation -28.174 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.442 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.075 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds