Wall clock time and date at job start Mon Mar 30 2020 07:07:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38322 * 119.94271 * 2 1 4 4 C 1.38316 * 120.24531 * 179.97438 * 3 2 1 5 5 C 1.50703 * 119.94132 * 180.02562 * 4 3 2 6 6 C 1.38018 * 120.12054 * 0.02562 * 4 3 2 7 7 C 1.39340 * 119.87767 * 359.97438 * 6 4 3 8 8 C 1.48408 * 120.12099 * 180.02562 * 7 6 4 9 9 C 1.38035 * 121.16511 * 179.97438 * 8 7 6 10 10 C 1.39845 * 110.98918 * 180.02562 * 9 8 7 11 11 C 1.40174 * 127.94537 * 179.74129 * 10 9 8 12 12 H 1.08000 * 120.00639 * 359.97438 * 11 10 9 13 13 C 1.40187 * 119.99979 * 179.97438 * 11 10 9 14 14 N 1.30753 * 119.99500 * 0.02562 * 13 11 10 15 15 Si 1.86797 * 120.00139 * 180.02562 * 13 11 10 16 16 H 1.48496 * 109.47160 * 59.99887 * 15 13 11 17 17 H 1.48498 * 109.47162 * 180.02562 * 15 13 11 18 18 H 1.48499 * 109.46960 * 299.99908 * 15 13 11 19 19 S 1.77028 * 104.10552 * 0.02562 * 10 9 8 20 20 N 1.30663 * 121.16126 * 0.02583 * 8 7 6 21 21 C 1.38024 * 119.93895 * 180.27362 * 2 1 3 22 22 H 1.09000 * 109.46785 * 89.99658 * 1 2 3 23 23 H 1.08998 * 109.47311 * 209.99951 * 1 2 3 24 24 H 1.08996 * 109.47020 * 330.00636 * 1 2 3 25 25 H 1.08001 * 119.87663 * 0.02562 * 3 2 1 26 26 H 1.09004 * 109.47236 * 269.98349 * 5 4 3 27 27 H 1.08993 * 109.46791 * 29.98115 * 5 4 3 28 28 H 1.08997 * 109.47188 * 149.98186 * 5 4 3 29 29 H 1.08000 * 120.06639 * 179.97438 * 6 4 3 30 30 H 1.07999 * 124.50979 * 0.02562 * 9 8 7 31 31 H 0.97000 * 119.99983 * 179.97438 * 14 13 11 32 32 H 1.08001 * 120.05948 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1986 0.0000 4 6 3.5806 1.2059 0.0005 5 6 4.3258 2.5157 0.0011 6 6 4.2795 0.0158 0.0005 7 6 3.5891 -1.1946 0.0005 8 6 4.3352 -2.4775 0.0011 9 6 3.6733 -3.6888 0.0017 10 6 4.5788 -4.7545 0.0027 11 6 4.2946 -6.1271 0.0085 12 1 3.2693 -6.4663 0.0133 13 6 5.3413 -7.0596 0.0081 14 7 6.5826 -6.6490 0.0029 15 14 4.9626 -8.8888 0.0151 16 1 4.1729 -9.2354 -1.1937 17 1 6.2332 -9.6574 0.0141 18 1 4.1806 -9.2277 1.2312 19 16 6.1665 -3.9715 0.0036 20 7 5.6416 -2.4999 0.0021 21 6 2.1959 -1.1960 -0.0057 22 1 -0.3633 0.0001 -1.0277 23 1 -0.3634 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5137 25 1 1.6545 2.1322 0.0004 26 1 4.5062 2.8317 -1.0264 27 1 3.7316 3.2715 0.5146 28 1 5.2787 2.3914 0.5156 29 1 5.3595 0.0225 0.0005 30 1 2.5989 -3.7990 0.0013 31 1 7.3069 -7.2942 0.0030 32 1 1.6558 -2.1313 -0.0106 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259317797.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:58 Heat of formation + Delta-G solvation = 5.890298 kcal Electronic energy + Delta-G solvation = -15886.071598 eV Core-core repulsion = 13321.622126 eV Total energy + Delta-G solvation = -2564.449472 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.63290 -38.67953 -36.15095 -34.40248 -32.88901 -31.82794 -28.54272 -28.04985 -27.18611 -25.23284 -22.34864 -21.39189 -20.18001 -19.74085 -17.47807 -17.38477 -16.88313 -15.98120 -15.83574 -15.14325 -14.75175 -14.55024 -14.17122 -14.04520 -13.95455 -13.75446 -13.27377 -13.19507 -13.10239 -12.91664 -12.66887 -12.40546 -12.12391 -11.93898 -11.83353 -11.52634 -10.89213 -10.65193 -10.08485 -9.95686 -9.43680 -8.92398 -8.55306 -6.70845 0.12890 0.49381 0.83722 1.38982 1.54421 1.56033 1.58706 2.06860 2.13424 2.21014 2.89489 3.14808 3.94934 3.95771 4.03279 4.30432 4.51296 4.51851 4.72566 4.76005 4.82780 4.90448 4.91988 4.96968 5.01261 5.09489 5.23708 5.34667 5.36975 5.51399 5.65170 5.72216 5.81066 5.94873 6.18678 6.34052 6.46050 6.69091 8.00392 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.034317 B = 0.005024 C = 0.004397 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 815.735306 B = 5571.772544 C = 6367.054255 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.086 4.086 3 C -0.124 4.124 4 C -0.092 4.092 5 C -0.106 4.106 6 C -0.124 4.124 7 C -0.028 4.028 8 C 0.147 3.853 9 C -0.399 4.399 10 C -0.030 4.030 11 C -0.388 4.388 12 H 0.107 0.893 13 C 0.016 3.984 14 N -0.794 5.794 15 Si 1.016 2.984 16 H -0.254 1.254 17 H -0.260 1.260 18 H -0.254 1.254 19 S 0.286 5.714 20 N -0.692 5.692 21 C -0.125 4.125 22 H 0.080 0.920 23 H 0.067 0.933 24 H 0.088 0.912 25 H 0.156 0.844 26 H 0.079 0.921 27 H 0.090 0.910 28 H 0.059 0.941 29 H 0.103 0.897 30 H 0.136 0.864 31 H 0.312 0.688 32 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.783 6.717 -0.031 10.281 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C -0.086 4.086 3 C -0.142 4.142 4 C -0.092 4.092 5 C -0.163 4.163 6 C -0.144 4.144 7 C -0.032 4.032 8 C -0.018 4.018 9 C -0.431 4.431 10 C -0.157 4.157 11 C -0.427 4.427 12 H 0.125 0.875 13 C -0.205 4.205 14 N -0.421 5.421 15 Si 0.833 3.167 16 H -0.177 1.177 17 H -0.184 1.184 18 H -0.178 1.178 19 S 0.441 5.559 20 N -0.521 5.521 21 C -0.145 4.145 22 H 0.099 0.901 23 H 0.086 0.914 24 H 0.106 0.894 25 H 0.174 0.826 26 H 0.097 0.903 27 H 0.109 0.891 28 H 0.078 0.922 29 H 0.121 0.879 30 H 0.153 0.847 31 H 0.125 0.875 32 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -5.305 7.152 -0.028 8.905 hybrid contribution -1.398 -1.025 -0.016 1.734 sum -6.703 6.127 -0.044 9.082 Atomic orbital electron populations 1.20809 0.88394 1.03794 1.03276 1.20190 0.97840 0.91996 0.98602 1.21259 0.92913 0.98443 1.01629 1.20192 0.94735 0.95172 0.99068 1.20795 0.99740 0.92641 1.03095 1.21111 0.99460 0.91911 1.01940 1.18748 0.93476 0.90915 1.00105 1.19393 0.88523 0.93945 0.99903 1.21081 0.99376 0.90687 1.31989 1.24073 0.97176 0.98119 0.96328 1.19521 0.96448 0.88522 1.38174 0.87543 1.27347 0.93466 1.08407 0.91298 1.69118 1.01512 1.40962 1.30539 0.84702 0.79430 0.71911 0.80607 1.17737 1.18376 1.17750 1.81663 1.13175 0.89635 1.71428 1.71990 1.15464 1.25490 1.39195 1.21208 0.92227 0.98973 1.02092 0.90091 0.91439 0.89364 0.82607 0.90270 0.89084 0.92186 0.87876 0.84675 0.87539 0.86117 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.18 10.01 71.24 0.71 -1.46 16 2 C -0.09 -2.56 5.88 -19.89 -0.12 -2.67 16 3 C -0.12 -3.38 9.35 22.31 0.21 -3.17 16 4 C -0.09 -2.89 5.87 -19.90 -0.12 -3.01 16 5 C -0.11 -2.44 10.01 71.24 0.71 -1.73 16 6 C -0.12 -5.15 9.25 22.48 0.21 -4.94 16 7 C -0.03 -1.28 5.88 -20.04 -0.12 -1.40 16 8 C 0.15 7.94 6.57 41.98 0.28 8.21 16 9 C -0.40 -21.54 9.82 22.61 0.22 -21.31 16 10 C -0.03 -1.68 6.41 23.13 0.15 -1.53 16 11 C -0.39 -19.74 9.40 23.21 0.22 -19.52 16 12 H 0.11 4.99 7.85 -2.91 -0.02 4.97 16 13 C 0.02 0.72 5.50 85.33 0.47 1.18 16 14 N -0.79 -38.00 10.97 21.87 0.24 -37.76 16 15 Si 1.02 33.50 29.56 68.60 2.03 35.53 16 16 H -0.25 -8.08 7.11 99.48 0.71 -7.38 16 17 H -0.26 -7.99 7.11 99.48 0.71 -7.28 16 18 H -0.25 -8.09 7.11 99.48 0.71 -7.38 16 19 S 0.29 15.94 20.79 -56.49 -1.17 14.77 16 20 N -0.69 -39.33 10.49 -71.06 -0.75 -40.08 16 21 C -0.12 -4.78 9.10 22.48 0.20 -4.57 16 22 H 0.08 1.47 8.14 -2.39 -0.02 1.45 16 23 H 0.07 1.37 8.09 -2.39 -0.02 1.35 16 24 H 0.09 1.37 8.08 -2.39 -0.02 1.35 16 25 H 0.16 2.95 8.06 -2.91 -0.02 2.93 16 26 H 0.08 1.63 8.14 -2.38 -0.02 1.61 16 27 H 0.09 1.57 8.08 -2.39 -0.02 1.55 16 28 H 0.06 1.43 8.08 -2.39 -0.02 1.41 16 29 H 0.10 4.63 7.61 -2.91 -0.02 4.60 16 30 H 0.14 6.69 6.65 -2.91 -0.02 6.67 16 31 H 0.31 13.09 8.29 -92.71 -0.77 12.32 16 32 H 0.12 4.54 6.45 -2.91 -0.02 4.52 16 Total: -1.00 -65.28 289.69 4.51 -60.77 By element: Atomic # 1 Polarization: 21.56 SS G_CDS: 1.13 Total: 22.69 kcal Atomic # 6 Polarization: -58.95 SS G_CDS: 3.03 Total: -55.92 kcal Atomic # 7 Polarization: -77.34 SS G_CDS: -0.51 Total: -77.84 kcal Atomic # 14 Polarization: 33.50 SS G_CDS: 2.03 Total: 35.53 kcal Atomic # 16 Polarization: 15.94 SS G_CDS: -1.17 Total: 14.77 kcal Total: -65.28 4.51 -60.77 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259317797.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.665 kcal (2) G-P(sol) polarization free energy of solvation -65.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.384 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.506 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.890 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds