Wall clock time and date at job start Mon Mar 30 2020 07:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38339 * 119.87882 * 2 1 4 4 C 1.37994 * 120.12289 * 180.02562 * 3 2 1 5 5 C 1.39356 * 119.87678 * 359.97438 * 4 3 2 6 6 C 1.48410 * 120.12141 * 179.97438 * 5 4 3 7 7 C 1.38042 * 121.16787 * 353.63181 * 6 5 4 8 8 C 1.39839 * 110.99222 * 180.02562 * 7 6 5 9 9 C 1.40176 * 127.94821 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99772 * 0.02562 * 9 8 7 11 11 C 1.40177 * 120.00065 * 179.97438 * 9 8 7 12 12 N 1.30750 * 119.99897 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00170 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47078 * 60.00206 * 13 11 9 15 15 H 1.48494 * 109.47416 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47155 * 300.00683 * 13 11 9 17 17 S 1.77030 * 104.10682 * 359.97438 * 8 7 6 18 18 N 1.30659 * 121.16451 * 173.34622 * 6 5 4 19 19 C 1.39314 * 119.76085 * 0.02562 * 5 4 3 20 20 C 1.50698 * 120.06607 * 179.97438 * 19 5 4 21 21 C 1.38038 * 119.87308 * 0.25356 * 19 5 4 22 22 H 1.08995 * 109.47330 * 89.99900 * 1 2 3 23 23 H 1.08997 * 109.47070 * 210.00148 * 1 2 3 24 24 H 1.09001 * 109.46863 * 329.99847 * 1 2 3 25 25 H 1.08001 * 119.94358 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.06788 * 180.02562 * 4 3 2 27 27 H 1.08004 * 124.50309 * 0.02562 * 7 6 5 28 28 H 0.96997 * 119.99916 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.46655 * 83.17591 * 20 19 5 30 30 H 1.08998 * 109.46951 * 323.18429 * 20 19 5 31 31 H 1.08988 * 109.47496 * 203.17595 * 20 19 5 32 32 H 1.08009 * 119.93795 * 179.75143 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1995 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2754 0.0000 -0.0005 6 6 5.7595 0.0000 -0.0017 7 6 6.4739 1.1738 -0.1338 8 6 7.8503 0.9282 -0.1079 9 6 8.8940 1.8581 -0.2126 10 1 8.6716 2.9086 -0.3289 11 6 10.2262 1.4248 -0.1652 12 7 10.4954 0.1531 -0.0239 13 14 11.6170 2.6640 -0.3040 14 1 11.5191 3.6446 0.8070 15 1 12.9202 1.9563 -0.2267 16 1 11.5174 3.3765 -1.6032 17 16 7.9718 -0.8269 0.0890 18 7 6.4358 -1.1105 0.1278 19 6 3.5764 -1.2050 -0.0005 20 6 4.3257 -2.5125 -0.0011 21 6 2.1960 -1.1991 -0.0058 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6533 2.1332 0.0004 26 1 4.1132 2.1423 -0.0001 27 1 6.0289 2.1519 -0.2426 28 1 11.4173 -0.1468 0.0085 29 1 4.6126 -2.7672 1.0191 30 1 5.2199 -2.4186 -0.6173 31 1 3.6866 -3.2974 -0.4054 32 1 1.6530 -2.1328 -0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259328422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:51 Heat of formation + Delta-G solvation = 30.343207 kcal Electronic energy + Delta-G solvation = -16088.456045 eV Core-core repulsion = 13525.066931 eV Total energy + Delta-G solvation = -2563.389114 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.23678 -36.87795 -34.32795 -32.77442 -31.60747 -29.90736 -27.20423 -26.72101 -25.68676 -22.33994 -21.66161 -19.80694 -18.67007 -17.77235 -15.96609 -15.41232 -15.19862 -14.43277 -14.32603 -13.79436 -13.43597 -13.11420 -12.71237 -12.45433 -12.28663 -12.20679 -11.97266 -11.54600 -11.44337 -11.36237 -11.10160 -10.91951 -10.81222 -10.40620 -10.36686 -9.85060 -8.89308 -8.47383 -8.40038 -8.15769 -8.04895 -7.10494 -6.62556 -4.73290 1.63651 1.92533 2.60370 2.89388 2.92867 3.11040 3.53085 3.65623 3.81785 4.08895 4.53688 4.95629 5.17518 5.22080 5.45065 5.60336 5.71225 5.74241 5.87728 6.01272 6.08913 6.25196 6.46867 6.54555 6.60291 6.75159 6.89708 6.93457 7.00458 7.09794 7.29489 7.31144 7.49669 7.66471 7.86647 8.26663 8.37441 8.59115 9.76869 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.042037 B = 0.005060 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.914471 B = 5532.736065 C = 6174.133075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.102 4.102 3 C -0.133 4.133 4 C -0.100 4.100 5 C -0.004 4.004 6 C 0.152 3.848 7 C -0.373 4.373 8 C -0.004 4.004 9 C -0.372 4.372 10 H 0.093 0.907 11 C 0.055 3.945 12 N -0.774 5.774 13 Si 0.935 3.065 14 H -0.261 1.261 15 H -0.273 1.273 16 H -0.261 1.261 17 S 0.313 5.687 18 N -0.654 5.654 19 C -0.059 4.059 20 C -0.105 4.105 21 C -0.130 4.130 22 H 0.063 0.937 23 H 0.060 0.940 24 H 0.061 0.939 25 H 0.115 0.885 26 H 0.124 0.876 27 H 0.123 0.877 28 H 0.298 0.702 29 H 0.064 0.936 30 H 0.103 0.897 31 H 0.038 0.962 32 H 0.114 0.886 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.486 0.665 -0.282 7.521 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.103 4.103 3 C -0.152 4.152 4 C -0.121 4.121 5 C -0.009 4.009 6 C -0.012 4.012 7 C -0.406 4.406 8 C -0.131 4.131 9 C -0.411 4.411 10 H 0.111 0.889 11 C -0.168 4.168 12 N -0.402 5.402 13 Si 0.758 3.242 14 H -0.185 1.185 15 H -0.198 1.198 16 H -0.185 1.185 17 S 0.469 5.531 18 N -0.483 5.483 19 C -0.061 4.061 20 C -0.162 4.162 21 C -0.148 4.148 22 H 0.082 0.918 23 H 0.079 0.921 24 H 0.080 0.920 25 H 0.133 0.867 26 H 0.142 0.858 27 H 0.141 0.859 28 H 0.111 0.889 29 H 0.083 0.917 30 H 0.121 0.879 31 H 0.057 0.943 32 H 0.132 0.868 Dipole moment (debyes) X Y Z Total from point charges -6.561 -1.638 -0.016 6.762 hybrid contribution -0.308 2.321 -0.211 2.351 sum -6.869 0.683 -0.227 6.907 Atomic orbital electron populations 1.20709 0.91916 1.02082 1.01674 1.19789 0.95407 0.93320 1.01747 1.20797 0.93957 0.96989 1.03409 1.21222 0.93598 0.97802 0.99450 1.18563 0.91265 0.92302 0.98758 1.18813 0.91873 0.88904 1.01593 1.20868 0.92141 0.97632 1.29920 1.23639 0.94938 0.98955 0.95541 1.19018 0.88933 0.95185 1.37977 0.88861 1.26220 1.01161 0.96555 0.92874 1.69079 1.23573 1.15500 1.32091 0.85873 0.77985 0.79996 0.80306 1.18499 1.19776 1.18498 1.81984 1.00914 1.01894 1.68309 1.72293 1.09392 1.29582 1.37001 1.20064 0.92912 0.95654 0.97467 1.20971 1.00444 0.91593 1.03183 1.20779 0.93455 0.97024 1.03584 0.91779 0.92091 0.92033 0.86692 0.85772 0.85889 0.88931 0.91744 0.87883 0.94342 0.86809 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.21 10.01 36.01 0.36 -0.85 16 2 C -0.10 -1.56 5.88 -104.56 -0.62 -2.17 16 3 C -0.13 -2.14 9.68 -39.63 -0.38 -2.52 16 4 C -0.10 -1.90 9.45 -39.25 -0.37 -2.27 16 5 C 0.00 -0.10 5.87 -104.89 -0.62 -0.71 16 6 C 0.15 3.79 6.48 -84.25 -0.55 3.24 16 7 C -0.37 -9.42 9.81 -39.05 -0.38 -9.81 16 8 C 0.00 -0.09 6.41 -38.26 -0.25 -0.34 16 9 C -0.37 -9.26 9.40 -38.13 -0.36 -9.62 16 10 H 0.09 2.17 7.85 -52.49 -0.41 1.76 16 11 C 0.05 1.25 5.50 -17.28 -0.10 1.15 16 12 N -0.77 -18.24 10.97 55.56 0.61 -17.63 16 13 Si 0.94 16.97 29.56 -169.99 -5.03 11.94 16 14 H -0.26 -4.69 7.11 56.52 0.40 -4.29 16 15 H -0.27 -4.80 7.11 56.52 0.40 -4.39 16 16 H -0.26 -4.69 7.11 56.52 0.40 -4.28 16 17 S 0.31 8.00 20.79 -107.50 -2.23 5.77 16 18 N -0.65 -16.55 7.36 26.20 0.19 -16.36 16 19 C -0.06 -1.17 5.91 -104.30 -0.62 -1.78 16 20 C -0.10 -2.02 8.64 36.00 0.31 -1.71 16 21 C -0.13 -2.18 9.31 -39.63 -0.37 -2.55 16 22 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 23 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 24 H 0.06 0.62 8.08 -51.93 -0.42 0.20 16 25 H 0.12 1.51 8.06 -52.49 -0.42 1.09 16 26 H 0.12 2.24 6.49 -52.49 -0.34 1.90 16 27 H 0.12 2.88 6.70 -52.48 -0.35 2.52 16 28 H 0.30 6.29 8.29 -40.82 -0.34 5.95 16 29 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 30 H 0.10 2.26 5.72 -51.93 -0.30 1.96 16 31 H 0.04 0.62 8.03 -51.94 -0.42 0.20 16 32 H 0.11 1.63 8.05 -52.48 -0.42 1.20 16 LS Contribution 284.01 15.07 4.28 4.28 Total: -1.00 -27.24 284.01 -9.59 -36.83 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.48 Total: 5.12 kcal Atomic # 6 Polarization: -26.02 SS G_CDS: -3.93 Total: -29.94 kcal Atomic # 7 Polarization: -34.80 SS G_CDS: 0.80 Total: -33.99 kcal Atomic # 14 Polarization: 16.97 SS G_CDS: -5.03 Total: 11.94 kcal Atomic # 16 Polarization: 8.00 SS G_CDS: -2.23 Total: 5.77 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.24 -9.59 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259328422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.171 kcal (2) G-P(sol) polarization free energy of solvation -27.240 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.932 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.588 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.828 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.343 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds