Wall clock time and date at job start Mon Mar 30 2020 07:09:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38339 * 119.87882 * 2 1 4 4 C 1.37994 * 120.12289 * 180.02562 * 3 2 1 5 5 C 1.39356 * 119.87678 * 359.97438 * 4 3 2 6 6 C 1.48410 * 120.12141 * 179.97438 * 5 4 3 7 7 C 1.38042 * 121.16787 * 353.63181 * 6 5 4 8 8 C 1.39839 * 110.99222 * 180.02562 * 7 6 5 9 9 C 1.40176 * 127.94821 * 180.02562 * 8 7 6 10 10 H 1.08002 * 119.99772 * 0.02562 * 9 8 7 11 11 C 1.40177 * 120.00065 * 179.97438 * 9 8 7 12 12 N 1.30750 * 119.99897 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00170 * 180.02562 * 11 9 8 14 14 H 1.48506 * 109.47078 * 60.00206 * 13 11 9 15 15 H 1.48494 * 109.47416 * 180.02562 * 13 11 9 16 16 H 1.48507 * 109.47155 * 300.00683 * 13 11 9 17 17 S 1.77030 * 104.10682 * 359.97438 * 8 7 6 18 18 N 1.30659 * 121.16451 * 173.34622 * 6 5 4 19 19 C 1.39314 * 119.76085 * 0.02562 * 5 4 3 20 20 C 1.50698 * 120.06607 * 179.97438 * 19 5 4 21 21 C 1.38038 * 119.87308 * 0.25356 * 19 5 4 22 22 H 1.08995 * 109.47330 * 89.99900 * 1 2 3 23 23 H 1.08997 * 109.47070 * 210.00148 * 1 2 3 24 24 H 1.09001 * 109.46863 * 329.99847 * 1 2 3 25 25 H 1.08001 * 119.94358 * 0.02562 * 3 2 1 26 26 H 1.07998 * 120.06788 * 180.02562 * 4 3 2 27 27 H 1.08004 * 124.50309 * 0.02562 * 7 6 5 28 28 H 0.96997 * 119.99916 * 179.97438 * 12 11 9 29 29 H 1.09002 * 109.46655 * 83.17591 * 20 19 5 30 30 H 1.08998 * 109.46951 * 323.18429 * 20 19 5 31 31 H 1.08988 * 109.47496 * 203.17595 * 20 19 5 32 32 H 1.08009 * 119.93795 * 179.75143 * 21 19 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1962 1.1995 0.0000 4 6 3.5761 1.2054 -0.0005 5 6 4.2754 0.0000 -0.0005 6 6 5.7595 0.0000 -0.0017 7 6 6.4739 1.1738 -0.1338 8 6 7.8503 0.9282 -0.1079 9 6 8.8940 1.8581 -0.2126 10 1 8.6716 2.9086 -0.3289 11 6 10.2262 1.4248 -0.1652 12 7 10.4954 0.1531 -0.0239 13 14 11.6170 2.6640 -0.3040 14 1 11.5191 3.6446 0.8070 15 1 12.9202 1.9563 -0.2267 16 1 11.5174 3.3765 -1.6032 17 16 7.9718 -0.8269 0.0890 18 7 6.4358 -1.1105 0.1278 19 6 3.5764 -1.2050 -0.0005 20 6 4.3257 -2.5125 -0.0011 21 6 2.1960 -1.1991 -0.0058 22 1 -0.3634 0.0000 -1.0276 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3633 0.8900 0.5139 25 1 1.6533 2.1332 0.0004 26 1 4.1132 2.1423 -0.0001 27 1 6.0289 2.1519 -0.2426 28 1 11.4173 -0.1468 0.0085 29 1 4.6126 -2.7672 1.0191 30 1 5.2199 -2.4186 -0.6173 31 1 3.6866 -3.2974 -0.4054 32 1 1.6530 -2.1328 -0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259328422.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:51 Heat of formation + Delta-G solvation = 17.494678 kcal Electronic energy + Delta-G solvation = -16089.013199 eV Core-core repulsion = 13525.066931 eV Total energy + Delta-G solvation = -2563.946268 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.72002 -38.58003 -36.14798 -34.17176 -32.99041 -31.77281 -28.68447 -28.09546 -27.38586 -23.91556 -23.17095 -21.32162 -20.33976 -19.69147 -17.66958 -17.15416 -16.69476 -15.89198 -15.69540 -15.29923 -14.94247 -14.40861 -14.19054 -13.95348 -13.84055 -13.76132 -13.26128 -13.16246 -13.04015 -12.88107 -12.56006 -12.44333 -12.18817 -11.95243 -11.74190 -11.51616 -10.85549 -10.30401 -10.02102 -9.86000 -9.57171 -8.88110 -8.44420 -6.67131 0.15270 0.54272 0.85733 1.39112 1.55421 1.58515 1.58813 2.09407 2.16566 2.25261 2.91300 3.15966 3.97700 4.02655 4.12221 4.22720 4.49799 4.54306 4.77456 4.85816 4.90565 4.92764 4.95442 5.00856 5.08346 5.14504 5.26033 5.39817 5.47850 5.58179 5.65020 5.72004 5.91839 5.97336 6.21163 6.37696 6.49027 6.71669 8.02488 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.042037 B = 0.005060 C = 0.004534 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 665.914471 B = 5532.736065 C = 6174.133075 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.105 4.105 2 C -0.088 4.088 3 C -0.130 4.130 4 C -0.108 4.108 5 C -0.051 4.051 6 C 0.150 3.850 7 C -0.402 4.402 8 C -0.028 4.028 9 C -0.393 4.393 10 H 0.103 0.897 11 C 0.017 3.983 12 N -0.794 5.794 13 Si 1.014 2.986 14 H -0.255 1.255 15 H -0.260 1.260 16 H -0.255 1.255 17 S 0.273 5.727 18 N -0.665 5.665 19 C -0.076 4.076 20 C -0.097 4.097 21 C -0.132 4.132 22 H 0.081 0.919 23 H 0.075 0.925 24 H 0.079 0.921 25 H 0.150 0.850 26 H 0.122 0.878 27 H 0.132 0.868 28 H 0.311 0.689 29 H 0.051 0.949 30 H 0.071 0.929 31 H 0.069 0.931 32 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.109 1.781 -0.431 9.292 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.089 4.089 3 C -0.148 4.148 4 C -0.129 4.129 5 C -0.055 4.055 6 C -0.015 4.015 7 C -0.434 4.434 8 C -0.155 4.155 9 C -0.432 4.432 10 H 0.121 0.879 11 C -0.204 4.204 12 N -0.421 5.421 13 Si 0.831 3.169 14 H -0.179 1.179 15 H -0.184 1.184 16 H -0.179 1.179 17 S 0.428 5.572 18 N -0.494 5.494 19 C -0.078 4.078 20 C -0.155 4.155 21 C -0.150 4.150 22 H 0.099 0.901 23 H 0.094 0.906 24 H 0.098 0.902 25 H 0.168 0.832 26 H 0.140 0.860 27 H 0.150 0.850 28 H 0.123 0.877 29 H 0.070 0.930 30 H 0.090 0.910 31 H 0.088 0.912 32 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -8.217 -0.548 -0.163 8.237 hybrid contribution 0.084 1.977 -0.169 1.986 sum -8.133 1.429 -0.332 8.265 Atomic orbital electron populations 1.20808 0.88289 1.03835 1.03256 1.20348 0.97917 0.92314 0.98307 1.21194 0.92697 0.99038 1.01882 1.21345 0.95124 0.96767 0.99619 1.18695 0.89709 0.94412 1.02717 1.19330 0.93976 0.88487 0.99678 1.21068 0.92119 0.98372 1.31822 1.24038 0.95956 0.99311 0.96196 1.19479 0.89976 0.95549 1.38153 0.87892 1.27284 1.03053 0.98591 0.91481 1.69134 1.25060 1.17305 1.30624 0.84737 0.74473 0.77175 0.80470 1.17867 1.18385 1.17862 1.81813 1.02400 1.02494 1.70497 1.72460 1.08717 1.29711 1.38486 1.20230 0.94500 0.94833 0.98274 1.20822 0.99854 0.92894 1.01900 1.21105 0.92109 0.99099 1.02647 0.90058 0.90559 0.90218 0.83221 0.86007 0.85039 0.87675 0.93019 0.91023 0.91227 0.83934 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.84 10.01 71.24 0.71 -1.13 16 2 C -0.09 -2.38 5.88 -19.82 -0.12 -2.50 16 3 C -0.13 -3.83 9.68 22.24 0.22 -3.62 16 4 C -0.11 -4.08 9.45 22.48 0.21 -3.87 16 5 C -0.05 -2.27 5.87 -20.04 -0.12 -2.39 16 6 C 0.15 7.83 6.48 41.98 0.27 8.11 16 7 C -0.40 -21.38 9.81 22.61 0.22 -21.16 16 8 C -0.03 -1.56 6.41 23.13 0.15 -1.41 16 9 C -0.39 -20.03 9.40 23.21 0.22 -19.81 16 10 H 0.10 4.87 7.85 -2.91 -0.02 4.85 16 11 C 0.02 0.76 5.50 85.33 0.47 1.23 16 12 N -0.79 -37.91 10.97 21.87 0.24 -37.67 16 13 Si 1.01 33.78 29.56 68.60 2.03 35.80 16 14 H -0.25 -8.24 7.11 99.48 0.71 -7.53 16 15 H -0.26 -8.07 7.11 99.48 0.71 -7.36 16 16 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 17 S 0.27 14.80 20.79 -56.49 -1.17 13.62 16 18 N -0.67 -35.77 7.36 -71.03 -0.52 -36.29 16 19 C -0.08 -3.02 5.91 -19.65 -0.12 -3.14 16 20 C -0.10 -3.84 8.64 71.24 0.62 -3.23 16 21 C -0.13 -4.09 9.31 22.24 0.21 -3.88 16 22 H 0.08 1.23 8.14 -2.39 -0.02 1.22 16 23 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 24 H 0.08 1.16 8.08 -2.39 -0.02 1.14 16 25 H 0.15 3.33 8.06 -2.91 -0.02 3.30 16 26 H 0.12 4.49 6.49 -2.91 -0.02 4.48 16 27 H 0.13 6.48 6.70 -2.91 -0.02 6.46 16 28 H 0.31 13.05 8.29 -92.71 -0.77 12.28 16 29 H 0.05 2.11 8.14 -2.39 -0.02 2.09 16 30 H 0.07 3.31 5.72 -2.39 -0.01 3.30 16 31 H 0.07 2.21 8.03 -2.39 -0.02 2.19 16 32 H 0.14 3.54 8.05 -2.91 -0.02 3.52 16 Total: -1.00 -62.44 284.01 4.65 -57.79 By element: Atomic # 1 Polarization: 22.40 SS G_CDS: 1.13 Total: 23.54 kcal Atomic # 6 Polarization: -59.74 SS G_CDS: 2.94 Total: -56.79 kcal Atomic # 7 Polarization: -73.68 SS G_CDS: -0.28 Total: -73.96 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.80 kcal Atomic # 16 Polarization: 14.80 SS G_CDS: -1.17 Total: 13.62 kcal Total: -62.44 4.65 -57.79 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259328422.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.284 kcal (2) G-P(sol) polarization free energy of solvation -62.435 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.848 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.789 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.495 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds