Wall clock time and date at job start Mon Mar 30 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38376 * 119.92767 * 2 1 4 4 C 1.38333 * 120.28375 * 180.02562 * 3 2 1 5 5 C 1.37980 * 120.14367 * 359.95764 * 4 3 2 6 6 C 1.39535 * 119.85634 * 0.02562 * 5 4 3 7 7 C 1.47875 * 120.13964 * 180.02562 * 6 5 4 8 8 N 1.30219 * 125.47589 * 359.72525 * 7 6 5 9 9 C 1.31305 * 117.04361 * 179.81140 * 8 7 6 10 10 C 1.50697 * 122.07625 * 180.22975 * 9 8 7 11 11 C 1.50697 * 109.47058 * 305.26453 * 10 9 8 12 12 H 1.08000 * 120.00506 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99964 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46967 * 59.99951 * 15 13 11 17 17 H 1.48503 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47222 * 299.99770 * 15 13 11 19 19 C 1.33719 * 115.84463 * 0.47708 * 9 8 7 20 20 S 1.76177 * 125.46745 * 180.02562 * 7 6 5 21 21 C 1.37941 * 119.92850 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47059 * 270.02734 * 1 2 3 23 23 H 1.09001 * 109.46831 * 30.02128 * 1 2 3 24 24 H 1.08993 * 109.47512 * 150.02197 * 1 2 3 25 25 H 1.07998 * 119.85503 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.92401 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.07360 * 180.29915 * 5 4 3 28 28 H 1.08995 * 109.47216 * 65.26399 * 10 9 8 29 29 H 1.09006 * 109.47027 * 185.26529 * 10 9 8 30 30 H 0.96999 * 119.99883 * 180.02562 * 14 13 11 31 31 H 1.08003 * 125.89292 * 179.78301 * 19 9 8 32 32 H 1.08003 * 120.07349 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2078 -0.0005 5 6 4.2810 0.0190 -0.0002 6 6 3.5908 -1.1938 0.0002 7 6 4.3351 -2.4716 0.0011 8 7 5.6318 -2.5910 -0.0034 9 6 6.1191 -3.8102 0.0022 10 6 7.6018 -4.0795 0.0030 11 6 8.2422 -3.3676 -1.1607 12 1 7.6361 -2.7794 -1.8338 13 6 9.6018 -3.4680 -1.3667 14 7 10.3397 -4.1855 -0.5480 15 14 10.3958 -2.5850 -2.8087 16 1 10.1585 -1.1243 -2.6861 17 1 11.8569 -2.8504 -2.8080 18 1 9.8033 -3.0780 -4.0780 19 6 5.2179 -4.7982 0.0019 20 16 3.6096 -4.0771 0.0010 21 6 2.1952 -1.1955 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6539 2.1325 0.0004 26 1 4.1136 2.1472 -0.0009 27 1 5.3610 0.0270 0.0043 28 1 8.0364 -3.7169 0.9344 29 1 7.7764 -5.1517 -0.0864 30 1 11.2962 -4.2559 -0.6927 31 1 5.4376 -5.8556 0.0027 32 1 1.6553 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259343796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:21 Heat of formation + Delta-G solvation = 52.866337 kcal Electronic energy + Delta-G solvation = -15736.444591 eV Core-core repulsion = 13174.032153 eV Total energy + Delta-G solvation = -2562.412438 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -39.56925 -38.64582 -33.55369 -32.79481 -31.82105 -29.86022 -27.52555 -26.89592 -24.75424 -23.22158 -22.10106 -20.63549 -18.53831 -17.34826 -16.47466 -16.04651 -15.33947 -15.05848 -14.58985 -14.17304 -14.02138 -13.67630 -13.10921 -12.86579 -12.64784 -12.30249 -12.24544 -11.86510 -11.65655 -11.27101 -11.21475 -11.04280 -10.72647 -10.52030 -9.69133 -9.58993 -9.24844 -9.04071 -8.80217 -8.64446 -8.39625 -7.65124 -6.02502 -4.03599 0.61375 1.39048 1.79674 1.85698 2.23332 3.35294 3.38357 3.41422 3.51854 3.97166 4.30563 4.47900 4.76537 4.89009 5.11305 5.21516 5.32189 5.37680 5.44297 5.51070 5.69579 5.73808 5.87895 5.93179 6.11631 6.20523 6.48003 6.52287 6.57595 6.94154 6.97972 7.42967 7.51537 7.93703 8.26856 8.52884 8.99174 9.58860 11.08533 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.005230 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.177542 B = 5352.631276 C = 6242.606092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.091 4.091 3 C -0.114 4.114 4 C -0.117 4.117 5 C -0.079 4.079 6 C -0.007 4.007 7 C 0.100 3.900 8 N -0.430 5.430 9 C 0.113 3.887 10 C 0.082 3.918 11 C -0.503 4.503 12 H 0.058 0.942 13 C 0.057 3.943 14 N -0.898 5.898 15 Si 0.897 3.103 16 H -0.276 1.276 17 H -0.287 1.287 18 H -0.277 1.277 19 C -0.257 4.257 20 S 0.017 5.983 21 C -0.103 4.103 22 H 0.069 0.931 23 H 0.066 0.934 24 H 0.066 0.934 25 H 0.122 0.878 26 H 0.127 0.873 27 H 0.139 0.861 28 H 0.040 0.960 29 H 0.037 0.963 30 H 0.262 0.738 31 H 0.173 0.827 32 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.192 6.719 1.982 19.494 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.091 4.091 3 C -0.133 4.133 4 C -0.136 4.136 5 C -0.100 4.100 6 C -0.011 4.011 7 C -0.176 4.176 8 N -0.143 5.143 9 C -0.018 4.018 10 C 0.042 3.958 11 C -0.542 4.542 12 H 0.077 0.923 13 C -0.144 4.144 14 N -0.537 5.537 15 Si 0.725 3.275 16 H -0.201 1.201 17 H -0.212 1.212 18 H -0.203 1.203 19 C -0.394 4.394 20 S 0.272 5.728 21 C -0.123 4.123 22 H 0.088 0.912 23 H 0.085 0.915 24 H 0.085 0.915 25 H 0.140 0.860 26 H 0.145 0.855 27 H 0.157 0.843 28 H 0.058 0.942 29 H 0.055 0.945 30 H 0.072 0.928 31 H 0.191 0.809 32 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -18.681 6.617 2.008 19.920 hybrid contribution 1.447 0.073 -0.805 1.658 sum -17.234 6.690 1.203 18.526 Atomic orbital electron populations 1.20771 0.91001 1.02771 1.02314 1.19718 0.96040 0.92696 1.00623 1.21118 0.94311 0.97349 1.00565 1.21119 0.94087 0.98036 1.00318 1.21408 1.01305 0.90654 0.96643 1.17879 0.91899 0.89517 1.01812 1.25850 0.91460 0.94883 1.05381 1.66409 1.08905 1.25736 1.13267 1.21151 1.00653 0.84782 0.95208 1.18070 0.81081 0.97885 0.98728 1.20953 0.92429 1.30101 1.10686 0.92337 1.24974 0.97200 0.95511 0.96672 1.69934 1.06144 1.40298 1.37357 0.86568 0.77983 0.80285 0.82681 1.20121 1.21245 1.20276 1.26769 0.92235 1.04512 1.15908 1.84375 1.12069 1.03598 1.72785 1.21009 0.92416 0.98044 1.00864 0.91188 0.91521 0.91524 0.86010 0.85503 0.84279 0.94161 0.94458 0.92798 0.80923 0.85892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.09 -1.01 5.87 -104.68 -0.61 -1.63 16 3 C -0.11 -1.23 9.69 -39.50 -0.38 -1.61 16 4 C -0.12 -1.43 10.03 -39.64 -0.40 -1.82 16 5 C -0.08 -1.21 9.68 -39.19 -0.38 -1.59 16 6 C -0.01 -0.12 5.87 -104.98 -0.62 -0.73 16 7 C 0.10 1.89 7.35 -14.29 -0.11 1.78 16 8 N -0.43 -9.66 9.92 -7.55 -0.07 -9.73 16 9 C 0.11 2.60 5.99 -84.40 -0.51 2.09 16 10 C 0.08 2.16 5.45 -29.04 -0.16 2.01 16 11 C -0.50 -14.50 8.97 -34.44 -0.31 -14.81 16 12 H 0.06 1.71 7.72 -52.49 -0.41 1.30 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.56 16 14 N -0.90 -26.74 13.29 55.43 0.74 -26.01 16 15 Si 0.90 22.06 29.54 -169.99 -5.02 17.04 16 16 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 17 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 18 H -0.28 -6.72 7.11 56.52 0.40 -6.32 16 19 C -0.26 -4.98 11.02 29.15 0.32 -4.66 16 20 S 0.02 0.29 22.40 -107.50 -2.41 -2.12 16 21 C -0.10 -1.36 9.25 -39.20 -0.36 -1.73 16 22 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 23 H 0.07 0.44 8.08 -51.93 -0.42 0.02 16 24 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 25 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 26 H 0.13 1.24 8.06 -52.49 -0.42 0.82 16 27 H 0.14 2.32 7.82 -52.49 -0.41 1.91 16 28 H 0.04 1.13 8.14 -51.93 -0.42 0.71 16 29 H 0.04 0.99 8.01 -51.93 -0.42 0.58 16 30 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 31 H 0.17 2.95 8.06 -52.48 -0.42 2.53 16 32 H 0.12 1.47 7.30 -52.48 -0.38 1.09 16 LS Contribution 296.89 15.07 4.47 4.47 Total: -1.00 -31.22 296.89 -9.24 -40.46 By element: Atomic # 1 Polarization: 1.26 SS G_CDS: -3.70 Total: -2.44 kcal Atomic # 6 Polarization: -18.43 SS G_CDS: -3.25 Total: -21.67 kcal Atomic # 7 Polarization: -36.40 SS G_CDS: 0.66 Total: -35.74 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.02 Total: 17.04 kcal Atomic # 16 Polarization: 0.29 SS G_CDS: -2.41 Total: -2.12 kcal Total LS contribution 4.47 Total: 4.47 kcal Total: -31.22 -9.24 -40.46 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259343796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.327 kcal (2) G-P(sol) polarization free energy of solvation -31.217 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 62.110 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.244 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.461 kcal (6) G-S(sol) free energy of system = (1) + (5) 52.866 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds