Wall clock time and date at job start Mon Mar 30 2020 07:09:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 C 1.38376 * 119.92767 * 2 1 4 4 C 1.38333 * 120.28375 * 180.02562 * 3 2 1 5 5 C 1.37980 * 120.14367 * 359.95764 * 4 3 2 6 6 C 1.39535 * 119.85634 * 0.02562 * 5 4 3 7 7 C 1.47875 * 120.13964 * 180.02562 * 6 5 4 8 8 N 1.30219 * 125.47589 * 359.72525 * 7 6 5 9 9 C 1.31305 * 117.04361 * 179.81140 * 8 7 6 10 10 C 1.50697 * 122.07625 * 180.22975 * 9 8 7 11 11 C 1.50697 * 109.47058 * 305.26453 * 10 9 8 12 12 H 1.08000 * 120.00506 * 359.97438 * 11 10 9 13 13 C 1.37884 * 119.99964 * 180.02562 * 11 10 9 14 14 N 1.31513 * 119.99854 * 0.02562 * 13 11 10 15 15 Si 1.86800 * 120.00043 * 180.02562 * 13 11 10 16 16 H 1.48495 * 109.46967 * 59.99951 * 15 13 11 17 17 H 1.48503 * 109.47206 * 179.97438 * 15 13 11 18 18 H 1.48499 * 109.47222 * 299.99770 * 15 13 11 19 19 C 1.33719 * 115.84463 * 0.47708 * 9 8 7 20 20 S 1.76177 * 125.46745 * 180.02562 * 7 6 5 21 21 C 1.37941 * 119.92850 * 179.97438 * 2 1 3 22 22 H 1.09002 * 109.47059 * 270.02734 * 1 2 3 23 23 H 1.09001 * 109.46831 * 30.02128 * 1 2 3 24 24 H 1.08993 * 109.47512 * 150.02197 * 1 2 3 25 25 H 1.07998 * 119.85503 * 0.02562 * 3 2 1 26 26 H 1.08000 * 119.92401 * 179.97438 * 4 3 2 27 27 H 1.08002 * 120.07360 * 180.29915 * 5 4 3 28 28 H 1.08995 * 109.47216 * 65.26399 * 10 9 8 29 29 H 1.09006 * 109.47027 * 185.26529 * 10 9 8 30 30 H 0.96999 * 119.99883 * 180.02562 * 14 13 11 31 31 H 1.08003 * 125.89292 * 179.78301 * 19 9 8 32 32 H 1.08003 * 120.07349 * 359.97438 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1992 0.0000 4 6 3.5807 1.2078 -0.0005 5 6 4.2810 0.0190 -0.0002 6 6 3.5908 -1.1938 0.0002 7 6 4.3351 -2.4716 0.0011 8 7 5.6318 -2.5910 -0.0034 9 6 6.1191 -3.8102 0.0022 10 6 7.6018 -4.0795 0.0030 11 6 8.2422 -3.3676 -1.1607 12 1 7.6361 -2.7794 -1.8338 13 6 9.6018 -3.4680 -1.3667 14 7 10.3397 -4.1855 -0.5480 15 14 10.3958 -2.5850 -2.8087 16 1 10.1585 -1.1243 -2.6861 17 1 11.8569 -2.8504 -2.8080 18 1 9.8033 -3.0780 -4.0780 19 6 5.2179 -4.7982 0.0019 20 16 3.6096 -4.0771 0.0010 21 6 2.1952 -1.1955 0.0005 22 1 -0.3633 0.0005 1.0277 23 1 -0.3633 0.8898 -0.5142 24 1 -0.3634 -0.8901 -0.5134 25 1 1.6539 2.1325 0.0004 26 1 4.1136 2.1472 -0.0009 27 1 5.3610 0.0270 0.0043 28 1 8.0364 -3.7169 0.9344 29 1 7.7764 -5.1517 -0.0864 30 1 11.2962 -4.2559 -0.6927 31 1 5.4376 -5.8556 0.0027 32 1 1.6553 -2.1308 0.0014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259343796.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:21 Heat of formation + Delta-G solvation = 35.286240 kcal Electronic energy + Delta-G solvation = -15737.206921 eV Core-core repulsion = 13174.032153 eV Total energy + Delta-G solvation = -2563.174768 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.87611 -39.90823 -35.40517 -34.11779 -33.00341 -31.44805 -29.33979 -27.71504 -26.22647 -25.12367 -23.11386 -21.94943 -19.97774 -18.94745 -18.27316 -17.42265 -16.69592 -16.42530 -16.05458 -15.66747 -15.25563 -14.59641 -14.49596 -14.06368 -14.02769 -13.95843 -13.63182 -13.20692 -12.96961 -12.89493 -12.66009 -12.40717 -12.25852 -12.00288 -11.69944 -11.52291 -10.72376 -10.62213 -10.53862 -10.07421 -9.69403 -9.03969 -8.23383 -6.33454 -0.67967 0.37759 0.41177 0.61990 0.71022 1.36246 1.39790 1.48057 2.00130 2.40249 2.85561 3.01120 3.10386 3.91481 3.97639 4.06275 4.22245 4.35775 4.42905 4.50862 4.57712 4.73274 4.92139 4.94934 5.01099 5.11275 5.28853 5.33210 5.36836 5.52637 5.55308 5.60722 5.69102 6.00981 6.12371 6.73781 6.96255 7.33261 8.87322 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.024191 B = 0.005230 C = 0.004484 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1157.177542 B = 5352.631276 C = 6242.606092 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.086 4.086 3 C -0.102 4.102 4 C -0.116 4.116 5 C -0.103 4.103 6 C -0.040 4.040 7 C 0.092 3.908 8 N -0.480 5.480 9 C 0.079 3.921 10 C 0.090 3.910 11 C -0.522 4.522 12 H 0.047 0.953 13 C 0.007 3.993 14 N -0.929 5.929 15 Si 0.965 3.035 16 H -0.272 1.272 17 H -0.275 1.275 18 H -0.268 1.268 19 C -0.265 4.265 20 S 0.111 5.889 21 C -0.105 4.105 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.073 0.927 25 H 0.160 0.840 26 H 0.149 0.851 27 H 0.109 0.891 28 H 0.007 0.993 29 H 0.026 0.974 30 H 0.267 0.733 31 H 0.192 0.808 32 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.352 8.141 1.164 22.881 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.087 4.087 3 C -0.121 4.121 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.044 4.044 7 C -0.183 4.183 8 N -0.194 5.194 9 C -0.052 4.052 10 C 0.051 3.949 11 C -0.560 4.560 12 H 0.065 0.935 13 C -0.191 4.191 14 N -0.569 5.569 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.200 1.200 18 H -0.193 1.193 19 C -0.403 4.403 20 S 0.367 5.633 21 C -0.125 4.125 22 H 0.102 0.898 23 H 0.104 0.896 24 H 0.092 0.908 25 H 0.178 0.822 26 H 0.167 0.833 27 H 0.128 0.872 28 H 0.025 0.975 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.209 0.791 32 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -21.863 8.027 1.194 23.320 hybrid contribution 2.226 -0.289 -0.500 2.300 sum -19.637 7.738 0.694 21.118 Atomic orbital electron populations 1.20862 0.88139 1.04157 1.03584 1.20178 0.98015 0.91901 0.98561 1.21585 0.93636 0.98901 0.97936 1.21384 0.95118 0.97566 0.99373 1.21353 1.00256 0.92147 0.98749 1.18048 0.93139 0.88502 1.04745 1.26427 0.90982 0.97422 1.03456 1.66305 1.11199 1.25936 1.16000 1.20670 0.99380 0.86370 0.98769 1.17726 0.84138 0.96558 0.96517 1.21183 0.93053 1.30375 1.11374 0.93514 1.25851 0.97633 0.96152 0.99493 1.70046 1.06548 1.41341 1.38979 0.85511 0.77390 0.78962 0.79250 1.19769 1.19970 1.19348 1.27014 0.94200 1.05001 1.14082 1.83882 1.08212 1.00360 1.70886 1.21189 0.91025 0.99692 1.00602 0.89814 0.89565 0.90846 0.82227 0.83332 0.87239 0.97474 0.95625 0.92432 0.79135 0.84731 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.23 10.01 71.24 0.71 -0.52 16 2 C -0.09 -1.62 5.87 -19.90 -0.12 -1.73 16 3 C -0.10 -1.81 9.69 22.33 0.22 -1.59 16 4 C -0.12 -2.63 10.03 22.23 0.22 -2.41 16 5 C -0.10 -3.24 9.68 22.52 0.22 -3.03 16 6 C -0.04 -1.30 5.87 -20.09 -0.12 -1.42 16 7 C 0.09 3.54 7.35 87.49 0.64 4.18 16 8 N -0.48 -22.77 9.92 -177.80 -1.76 -24.53 16 9 C 0.08 3.83 5.99 41.61 0.25 4.08 16 10 C 0.09 5.10 5.45 29.10 0.16 5.26 16 11 C -0.52 -31.59 8.97 25.60 0.23 -31.36 16 12 H 0.05 2.87 7.72 -2.91 -0.02 2.85 16 13 C 0.01 0.41 5.46 84.66 0.46 0.87 16 14 N -0.93 -57.17 13.29 21.45 0.28 -56.89 16 15 Si 0.96 46.21 29.54 68.60 2.03 48.24 16 16 H -0.27 -12.82 7.11 99.48 0.71 -12.11 16 17 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 19 C -0.27 -10.42 11.02 66.79 0.74 -9.68 16 20 S 0.11 3.51 22.40 -56.49 -1.27 2.24 16 21 C -0.10 -2.55 9.25 22.52 0.21 -2.34 16 22 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 23 H 0.09 0.67 8.08 -2.39 -0.02 0.65 16 24 H 0.07 0.75 8.08 -2.39 -0.02 0.73 16 25 H 0.16 1.67 8.06 -2.91 -0.02 1.65 16 26 H 0.15 2.61 8.06 -2.91 -0.02 2.58 16 27 H 0.11 4.00 7.82 -2.91 -0.02 3.97 16 28 H 0.01 0.44 8.14 -2.39 -0.02 0.42 16 29 H 0.03 1.46 8.01 -2.38 -0.02 1.44 16 30 H 0.27 15.36 8.31 -92.71 -0.77 14.59 16 31 H 0.19 6.52 8.06 -2.91 -0.02 6.50 16 32 H 0.13 2.84 7.30 -2.91 -0.02 2.81 16 Total: -1.00 -71.57 296.89 4.22 -67.35 By element: Atomic # 1 Polarization: 2.17 SS G_CDS: 1.12 Total: 3.28 kcal Atomic # 6 Polarization: -43.51 SS G_CDS: 3.82 Total: -39.69 kcal Atomic # 7 Polarization: -79.94 SS G_CDS: -1.48 Total: -81.42 kcal Atomic # 14 Polarization: 46.21 SS G_CDS: 2.03 Total: 48.24 kcal Atomic # 16 Polarization: 3.51 SS G_CDS: -1.27 Total: 2.24 kcal Total: -71.57 4.22 -67.35 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259343796.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 102.634 kcal (2) G-P(sol) polarization free energy of solvation -71.568 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.066 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.348 kcal (6) G-S(sol) free energy of system = (1) + (5) 35.286 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds