Wall clock time and date at job start Mon Mar 30 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38024 * 120.06479 * 2 1 4 4 C 1.38305 * 120.12496 * 179.72485 * 3 2 1 5 5 C 1.38348 * 120.24949 * 0.55171 * 4 3 2 6 6 C 1.37993 * 120.12189 * 359.72499 * 5 4 3 7 7 C 1.39350 * 120.05880 * 180.27522 * 2 1 3 8 8 C 1.48338 * 120.12655 * 0.02562 * 7 2 1 9 9 C 1.34841 * 122.96622 * 173.47584 * 8 7 2 10 10 S 1.76177 * 107.87515 * 179.97438 * 9 8 7 11 11 C 1.70914 * 90.43632 * 0.29457 * 10 9 8 12 12 C 1.50704 * 124.75245 * 179.85165 * 11 10 9 13 13 C 1.50699 * 109.46986 * 269.97562 * 12 11 10 14 14 H 1.08000 * 119.99923 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00198 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46948 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47098 * 120.00254 * 17 15 13 20 20 H 1.48495 * 109.47312 * 240.00110 * 17 15 13 21 21 N 1.28795 * 110.49331 * 359.82910 * 11 10 9 22 22 H 1.09008 * 109.46442 * 263.06341 * 1 2 3 23 23 H 1.08990 * 109.47057 * 143.06317 * 1 2 3 24 24 H 1.09002 * 109.46845 * 23.05434 * 1 2 3 25 25 H 1.08008 * 119.93721 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.87588 * 180.27334 * 4 3 2 27 27 H 1.07999 * 119.94038 * 179.74621 * 5 4 3 28 28 H 1.08002 * 120.06061 * 179.97438 * 6 5 4 29 29 H 1.08002 * 126.05718 * 359.97438 * 9 8 7 30 30 H 1.08996 * 109.47131 * 29.97463 * 12 11 10 31 31 H 1.08994 * 109.47161 * 149.97513 * 12 11 10 32 32 H 0.96998 * 119.99955 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1945 0.0000 4 6 3.5816 1.1960 0.0057 5 6 4.2798 0.0017 0.0000 6 6 3.5989 -1.1986 -0.0058 7 6 2.2050 -1.2061 -0.0058 8 6 1.4675 -2.4931 -0.0125 9 6 2.0780 -3.6879 -0.1469 10 16 0.8369 -4.9375 -0.1008 11 6 -0.3744 -3.7459 0.0841 12 6 -1.8491 -4.0317 0.2053 13 6 -2.4732 -4.0418 -1.1664 14 1 -1.8630 -3.8591 -2.0386 15 6 -3.8230 -4.2842 -1.3079 16 7 -4.5659 -4.5072 -0.2459 17 14 -4.5967 -4.2960 -3.0082 18 1 -3.5535 -4.0205 -4.0286 19 1 -5.2026 -5.6268 -3.2671 20 1 -5.6488 -3.2506 -3.0806 21 7 0.1498 -2.5697 0.1059 22 1 -0.3632 -0.1241 1.0203 23 1 -0.3633 -0.8213 -0.6175 24 1 -0.3633 0.9456 -0.4025 25 1 1.6585 2.1299 -0.0004 26 1 4.1185 2.1331 0.0102 27 1 5.3598 0.0087 0.0004 28 1 4.1450 -2.1303 -0.0106 29 1 3.1395 -3.8500 -0.2622 30 1 -1.9934 -5.0035 0.6772 31 1 -2.3202 -3.2592 0.8131 32 1 -5.5157 -4.6773 -0.3454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259361185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:18 Heat of formation + Delta-G solvation = 58.762829 kcal Electronic energy + Delta-G solvation = -16087.481599 eV Core-core repulsion = 13525.324852 eV Total energy + Delta-G solvation = -2562.156747 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -39.91250 -38.18527 -33.62264 -32.52109 -31.96300 -29.82966 -27.85897 -26.30494 -24.83179 -23.24873 -21.41473 -20.70667 -19.03349 -17.37712 -16.49179 -16.18279 -15.18380 -14.82782 -14.50837 -14.18693 -14.14326 -13.12177 -13.07036 -12.90021 -12.55972 -12.11940 -11.81165 -11.71526 -11.49489 -11.36949 -10.91547 -10.82235 -10.72103 -10.59156 -10.06199 -9.71674 -9.12668 -8.75686 -8.70098 -8.56030 -8.47854 -7.63495 -6.16320 -4.21041 0.92554 1.52075 1.78829 2.01762 2.43369 3.25311 3.32695 3.36626 3.42768 4.11746 4.36219 4.56977 4.97954 5.02026 5.15123 5.20504 5.39037 5.49520 5.53852 5.77777 5.96279 6.01679 6.13131 6.17367 6.33820 6.50506 6.57314 6.68640 6.81868 7.00012 7.21440 7.26930 7.34886 7.77782 8.08274 8.46612 8.80996 9.43306 10.93793 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.005549 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.333731 B = 5044.858380 C = 5704.790167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.046 4.046 3 C -0.129 4.129 4 C -0.117 4.117 5 C -0.134 4.134 6 C -0.103 4.103 7 C -0.017 4.017 8 C 0.109 3.891 9 C -0.288 4.288 10 S 0.094 5.906 11 C 0.125 3.875 12 C 0.084 3.916 13 C -0.513 4.513 14 H 0.059 0.941 15 C 0.064 3.936 16 N -0.890 5.890 17 Si 0.900 3.100 18 H -0.272 1.272 19 H -0.282 1.282 20 H -0.281 1.281 21 N -0.481 5.481 22 H 0.071 0.929 23 H 0.106 0.894 24 H 0.048 0.952 25 H 0.122 0.878 26 H 0.118 0.882 27 H 0.120 0.880 28 H 0.122 0.878 29 H 0.166 0.834 30 H 0.044 0.956 31 H 0.055 0.945 32 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.362 5.948 1.088 15.583 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C -0.047 4.047 3 C -0.147 4.147 4 C -0.136 4.136 5 C -0.152 4.152 6 C -0.122 4.122 7 C -0.020 4.020 8 C -0.022 4.022 9 C -0.428 4.428 10 S 0.352 5.648 11 C -0.154 4.154 12 C 0.043 3.957 13 C -0.553 4.553 14 H 0.078 0.922 15 C -0.139 4.139 16 N -0.528 5.528 17 Si 0.727 3.273 18 H -0.196 1.196 19 H -0.208 1.208 20 H -0.207 1.207 21 N -0.195 5.195 22 H 0.090 0.910 23 H 0.124 0.876 24 H 0.067 0.933 25 H 0.140 0.860 26 H 0.137 0.863 27 H 0.138 0.862 28 H 0.139 0.861 29 H 0.183 0.817 30 H 0.062 0.938 31 H 0.073 0.927 32 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 13.809 5.195 1.151 14.799 hybrid contribution 0.133 0.763 -0.903 1.189 sum 13.941 5.958 0.249 15.163 Atomic orbital electron populations 1.21098 0.89615 1.02782 1.03841 1.20194 0.97275 0.91610 0.95669 1.21031 0.94139 0.97474 1.02026 1.21141 0.94284 0.97863 1.00284 1.20930 0.99522 0.92280 1.02490 1.21089 0.92850 0.98244 0.99994 1.18075 0.91994 0.90159 1.01739 1.18833 0.88865 0.92428 1.02057 1.26719 1.03700 0.95442 1.16941 1.83909 0.98622 1.14126 1.68151 1.28275 1.03242 0.88803 0.95043 1.18180 0.79500 0.98739 0.99254 1.20925 0.93484 1.49725 0.91188 0.92230 1.24946 0.96947 0.94760 0.97237 1.69945 1.06577 1.47676 1.28644 0.86403 0.79296 0.77756 0.83844 1.19617 1.20779 1.20734 1.66541 1.09194 1.24082 1.19677 0.91004 0.87599 0.93318 0.86035 0.86350 0.86179 0.86055 0.81661 0.93811 0.92678 0.92582 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.00 8.71 36.01 0.31 -1.68 16 2 C -0.05 -0.75 5.91 -104.28 -0.62 -1.37 16 3 C -0.13 -1.72 9.66 -39.64 -0.38 -2.10 16 4 C -0.12 -1.37 10.04 -39.52 -0.40 -1.77 16 5 C -0.13 -1.58 10.03 -39.63 -0.40 -1.97 16 6 C -0.10 -1.39 9.48 -39.24 -0.37 -1.77 16 7 C -0.02 -0.28 5.88 -104.90 -0.62 -0.90 16 8 C 0.11 2.05 6.53 -84.61 -0.55 1.49 16 9 C -0.29 -4.82 10.62 29.53 0.31 -4.51 16 10 S 0.09 1.71 23.16 -107.50 -2.49 -0.78 16 11 C 0.12 2.73 6.55 -13.55 -0.09 2.65 16 12 C 0.08 2.09 5.55 -29.03 -0.16 1.93 16 13 C -0.51 -13.95 9.09 -34.44 -0.31 -14.26 16 14 H 0.06 1.63 7.74 -52.49 -0.41 1.23 16 15 C 0.06 1.74 5.46 -17.82 -0.10 1.64 16 16 N -0.89 -25.31 13.29 55.43 0.74 -24.58 16 17 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 18 H -0.27 -6.33 7.11 56.52 0.40 -5.92 16 19 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 20 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 21 N -0.48 -10.23 6.83 -8.42 -0.06 -10.29 16 22 H 0.07 1.25 8.14 -51.92 -0.42 0.83 16 23 H 0.11 2.14 5.72 -51.93 -0.30 1.84 16 24 H 0.05 0.72 8.04 -51.93 -0.42 0.30 16 25 H 0.12 1.37 8.06 -52.48 -0.42 0.95 16 26 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 27 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 28 H 0.12 1.40 6.70 -52.49 -0.35 1.05 16 29 H 0.17 2.20 6.94 -52.49 -0.36 1.83 16 30 H 0.04 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.06 1.47 8.14 -51.93 -0.42 1.04 16 32 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 LS Contribution 289.72 15.07 4.37 4.37 Total: -1.00 -28.87 289.72 -9.34 -38.21 By element: Atomic # 1 Polarization: 3.14 SS G_CDS: -3.51 Total: -0.37 kcal Atomic # 6 Polarization: -19.25 SS G_CDS: -3.37 Total: -22.62 kcal Atomic # 7 Polarization: -35.54 SS G_CDS: 0.68 Total: -34.86 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 1.71 SS G_CDS: -2.49 Total: -0.78 kcal Total LS contribution 4.37 Total: 4.37 kcal Total: -28.87 -9.34 -38.21 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259361185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.971 kcal (2) G-P(sol) polarization free energy of solvation -28.866 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 68.105 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.208 kcal (6) G-S(sol) free energy of system = (1) + (5) 58.763 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.27 seconds