Wall clock time and date at job start Mon Mar 30 2020 07:08:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50705 * 1 3 3 C 1.38024 * 120.06479 * 2 1 4 4 C 1.38305 * 120.12496 * 179.72485 * 3 2 1 5 5 C 1.38348 * 120.24949 * 0.55171 * 4 3 2 6 6 C 1.37993 * 120.12189 * 359.72499 * 5 4 3 7 7 C 1.39350 * 120.05880 * 180.27522 * 2 1 3 8 8 C 1.48338 * 120.12655 * 0.02562 * 7 2 1 9 9 C 1.34841 * 122.96622 * 173.47584 * 8 7 2 10 10 S 1.76177 * 107.87515 * 179.97438 * 9 8 7 11 11 C 1.70914 * 90.43632 * 0.29457 * 10 9 8 12 12 C 1.50704 * 124.75245 * 179.85165 * 11 10 9 13 13 C 1.50699 * 109.46986 * 269.97562 * 12 11 10 14 14 H 1.08000 * 119.99923 * 359.97438 * 13 12 11 15 15 C 1.37870 * 119.99945 * 179.97438 * 13 12 11 16 16 N 1.31512 * 120.00198 * 359.97438 * 15 13 12 17 17 Si 1.86808 * 119.99978 * 179.97438 * 15 13 12 18 18 H 1.48499 * 109.46948 * 0.02562 * 17 15 13 19 19 H 1.48500 * 109.47098 * 120.00254 * 17 15 13 20 20 H 1.48495 * 109.47312 * 240.00110 * 17 15 13 21 21 N 1.28795 * 110.49331 * 359.82910 * 11 10 9 22 22 H 1.09008 * 109.46442 * 263.06341 * 1 2 3 23 23 H 1.08990 * 109.47057 * 143.06317 * 1 2 3 24 24 H 1.09002 * 109.46845 * 23.05434 * 1 2 3 25 25 H 1.08008 * 119.93721 * 359.97438 * 3 2 1 26 26 H 1.08004 * 119.87588 * 180.27334 * 4 3 2 27 27 H 1.07999 * 119.94038 * 179.74621 * 5 4 3 28 28 H 1.08002 * 120.06061 * 179.97438 * 6 5 4 29 29 H 1.08002 * 126.05718 * 359.97438 * 9 8 7 30 30 H 1.08996 * 109.47131 * 29.97463 * 12 11 10 31 31 H 1.08994 * 109.47161 * 149.97513 * 12 11 10 32 32 H 0.96998 * 119.99955 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1985 1.1945 0.0000 4 6 3.5816 1.1960 0.0057 5 6 4.2798 0.0017 0.0000 6 6 3.5989 -1.1986 -0.0058 7 6 2.2050 -1.2061 -0.0058 8 6 1.4675 -2.4931 -0.0125 9 6 2.0780 -3.6879 -0.1469 10 16 0.8369 -4.9375 -0.1008 11 6 -0.3744 -3.7459 0.0841 12 6 -1.8491 -4.0317 0.2053 13 6 -2.4732 -4.0418 -1.1664 14 1 -1.8630 -3.8591 -2.0386 15 6 -3.8230 -4.2842 -1.3079 16 7 -4.5659 -4.5072 -0.2459 17 14 -4.5967 -4.2960 -3.0082 18 1 -3.5535 -4.0205 -4.0286 19 1 -5.2026 -5.6268 -3.2671 20 1 -5.6488 -3.2506 -3.0806 21 7 0.1498 -2.5697 0.1059 22 1 -0.3632 -0.1241 1.0203 23 1 -0.3633 -0.8213 -0.6175 24 1 -0.3633 0.9456 -0.4025 25 1 1.6585 2.1299 -0.0004 26 1 4.1185 2.1331 0.0102 27 1 5.3598 0.0087 0.0004 28 1 4.1450 -2.1303 -0.0106 29 1 3.1395 -3.8500 -0.2622 30 1 -1.9934 -5.0035 0.6772 31 1 -2.3202 -3.2592 0.8131 32 1 -5.5157 -4.6773 -0.3454 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259361185.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:18 Heat of formation + Delta-G solvation = 44.019937 kcal Electronic energy + Delta-G solvation = -16088.120899 eV Core-core repulsion = 13525.324852 eV Total energy + Delta-G solvation = -2562.796047 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -41.21385 -39.42428 -35.57739 -33.66603 -33.43832 -31.36945 -29.36715 -27.55469 -26.52600 -24.80326 -22.60802 -22.02796 -20.48150 -18.79967 -18.55880 -17.31882 -16.72605 -16.15308 -15.87806 -15.60999 -15.44844 -14.56802 -14.44023 -14.32204 -13.98746 -13.83662 -13.30982 -13.12205 -12.92204 -12.78248 -12.65716 -12.57874 -12.09724 -11.88990 -11.78364 -11.65825 -10.66914 -10.43176 -10.28299 -10.13826 -9.61832 -8.94841 -8.26138 -6.39509 -0.35939 0.47141 0.51195 0.55207 0.93009 1.39050 1.40109 1.52897 2.04387 2.38857 2.99710 3.05656 3.22822 3.93342 4.02634 4.08548 4.27374 4.32809 4.48473 4.50077 4.72916 4.83859 4.87534 4.99080 5.04723 5.15146 5.23597 5.27682 5.50823 5.60182 5.63928 5.65531 5.81696 6.01296 6.12340 6.67536 6.96524 7.28857 8.83915 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.025698 B = 0.005549 C = 0.004907 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1089.333731 B = 5044.858380 C = 5704.790167 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.109 4.109 2 C -0.076 4.076 3 C -0.133 4.133 4 C -0.109 4.109 5 C -0.126 4.126 6 C -0.104 4.104 7 C -0.047 4.047 8 C 0.084 3.916 9 C -0.266 4.266 10 S 0.135 5.865 11 C 0.074 3.926 12 C 0.096 3.904 13 C -0.528 4.528 14 H 0.051 0.949 15 C 0.015 3.985 16 N -0.923 5.923 17 Si 0.966 3.034 18 H -0.269 1.269 19 H -0.271 1.271 20 H -0.276 1.276 21 N -0.494 5.494 22 H 0.054 0.946 23 H 0.070 0.930 24 H 0.064 0.936 25 H 0.138 0.862 26 H 0.154 0.846 27 H 0.158 0.842 28 H 0.143 0.857 29 H 0.208 0.792 30 H 0.030 0.970 31 H 0.021 0.979 32 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 17.510 6.791 0.044 18.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.077 4.077 3 C -0.151 4.151 4 C -0.128 4.128 5 C -0.144 4.144 6 C -0.123 4.123 7 C -0.050 4.050 8 C -0.046 4.046 9 C -0.405 4.405 10 S 0.392 5.608 11 C -0.203 4.203 12 C 0.055 3.945 13 C -0.568 4.568 14 H 0.069 0.931 15 C -0.185 4.185 16 N -0.562 5.562 17 Si 0.790 3.210 18 H -0.194 1.194 19 H -0.196 1.196 20 H -0.202 1.202 21 N -0.208 5.208 22 H 0.072 0.928 23 H 0.088 0.912 24 H 0.083 0.917 25 H 0.156 0.844 26 H 0.172 0.828 27 H 0.175 0.825 28 H 0.161 0.839 29 H 0.225 0.775 30 H 0.048 0.952 31 H 0.040 0.960 32 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 16.959 6.043 0.113 18.004 hybrid contribution -0.681 0.577 -0.540 1.043 sum 16.278 6.620 -0.427 17.578 Atomic orbital electron populations 1.20900 0.91470 1.02089 1.02095 1.20220 0.96351 0.93053 0.98044 1.21266 0.95332 0.96972 1.01495 1.21597 0.93525 0.99619 0.98014 1.21405 1.01390 0.91369 1.00249 1.21378 0.91432 1.00233 0.99254 1.18256 0.93431 0.89152 1.04159 1.19269 0.88008 0.94428 1.02921 1.27214 1.05179 0.94007 1.14139 1.83572 0.97322 1.12839 1.67080 1.27634 1.02898 0.90805 0.99005 1.17746 0.82164 0.96780 0.97760 1.21152 0.94015 1.49726 0.91859 0.93095 1.25801 0.97370 0.94181 1.01127 1.70049 1.07016 1.48374 1.30769 0.85383 0.78295 0.78239 0.79063 1.19363 1.19567 1.20152 1.66514 1.11182 1.24331 1.18807 0.92759 0.91168 0.91696 0.84388 0.82795 0.82455 0.83885 0.77486 0.95171 0.96047 0.92200 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.93 8.71 71.24 0.62 -3.31 16 2 C -0.08 -2.43 5.91 -19.65 -0.12 -2.55 16 3 C -0.13 -3.26 9.66 22.23 0.21 -3.05 16 4 C -0.11 -2.10 10.04 22.31 0.22 -1.87 16 5 C -0.13 -2.37 10.03 22.24 0.22 -2.15 16 6 C -0.10 -2.48 9.48 22.49 0.21 -2.26 16 7 C -0.05 -1.53 5.88 -20.04 -0.12 -1.64 16 8 C 0.08 3.14 6.53 40.95 0.27 3.41 16 9 C -0.27 -8.41 10.62 67.04 0.71 -7.70 16 10 S 0.14 4.87 23.16 -56.49 -1.31 3.56 16 11 C 0.07 3.42 6.55 88.55 0.58 4.00 16 12 C 0.10 5.13 5.55 29.10 0.16 5.29 16 13 C -0.53 -30.05 9.09 25.60 0.23 -29.81 16 14 H 0.05 2.91 7.74 -2.91 -0.02 2.89 16 15 C 0.01 0.83 5.46 84.65 0.46 1.29 16 16 N -0.92 -54.31 13.29 21.44 0.28 -54.03 16 17 Si 0.97 44.00 29.54 68.60 2.03 46.02 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.34 16 19 H -0.27 -11.77 7.11 99.48 0.71 -11.06 16 20 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 21 N -0.49 -22.01 6.83 -180.57 -1.23 -23.24 16 22 H 0.05 2.06 8.14 -2.38 -0.02 2.04 16 23 H 0.07 3.05 5.72 -2.39 -0.01 3.03 16 24 H 0.06 2.00 8.04 -2.39 -0.02 1.98 16 25 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 26 H 0.15 1.87 8.06 -2.91 -0.02 1.85 16 27 H 0.16 1.81 8.06 -2.91 -0.02 1.79 16 28 H 0.14 2.65 6.70 -2.91 -0.02 2.63 16 29 H 0.21 4.62 6.94 -2.91 -0.02 4.60 16 30 H 0.03 1.64 8.14 -2.39 -0.02 1.62 16 31 H 0.02 1.25 8.14 -2.39 -0.02 1.23 16 32 H 0.27 14.76 8.31 -92.71 -0.77 13.99 16 Total: -1.00 -66.12 289.72 4.57 -61.55 By element: Atomic # 1 Polarization: 5.36 SS G_CDS: 1.13 Total: 6.49 kcal Atomic # 6 Polarization: -44.03 SS G_CDS: 3.68 Total: -40.35 kcal Atomic # 7 Polarization: -76.32 SS G_CDS: -0.95 Total: -77.27 kcal Atomic # 14 Polarization: 44.00 SS G_CDS: 2.03 Total: 46.02 kcal Atomic # 16 Polarization: 4.87 SS G_CDS: -1.31 Total: 3.56 kcal Total: -66.12 4.57 -61.55 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259361185.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 105.571 kcal (2) G-P(sol) polarization free energy of solvation -66.125 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.446 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.574 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.551 kcal (6) G-S(sol) free energy of system = (1) + (5) 44.020 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds