Wall clock time and date at job start Mon Mar 30 2020 07:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38340 * 119.93972 * 2 1 4 4 C 1.38303 * 120.24157 * 179.97438 * 3 2 1 5 5 C 1.38041 * 120.12062 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.05926 * 180.02562 * 5 4 3 7 7 C 1.39310 * 119.87815 * 0.02562 * 5 4 3 8 8 C 1.48405 * 120.11791 * 179.72582 * 7 5 4 9 9 C 1.38047 * 121.16349 * 173.14578 * 8 7 5 10 10 C 1.39846 * 110.98832 * 179.97438 * 9 8 7 11 11 C 1.40170 * 127.94543 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00567 * 6.34524 * 11 10 9 13 13 C 1.40183 * 120.00055 * 186.33912 * 11 10 9 14 14 N 1.30753 * 119.99820 * 353.47660 * 13 11 10 15 15 Si 1.86802 * 120.00318 * 173.47686 * 13 11 10 16 16 H 1.48490 * 109.47339 * 94.97929 * 15 13 11 17 17 H 1.48495 * 109.47015 * 214.98699 * 15 13 11 18 18 H 1.48504 * 109.46908 * 334.98070 * 15 13 11 19 19 S 1.77031 * 104.10548 * 359.97438 * 10 9 8 20 20 N 1.30663 * 121.16885 * 352.86089 * 8 7 5 21 21 C 1.38001 * 119.94034 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.46955 * 90.00164 * 1 2 3 23 23 H 1.09004 * 109.47075 * 210.00026 * 1 2 3 24 24 H 1.08997 * 109.47113 * 330.00126 * 1 2 3 25 25 H 1.07998 * 119.87826 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.93955 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46543 * 263.11314 * 6 5 4 28 28 H 1.08998 * 109.47237 * 23.11049 * 6 5 4 29 29 H 1.08994 * 109.47166 * 143.11665 * 6 5 4 30 30 H 1.07995 * 124.50841 * 359.97438 * 9 8 7 31 31 H 0.97003 * 120.00477 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.05756 * 0.03008 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0157 0.0005 6 6 5.7865 0.0253 0.0017 7 6 3.5892 -1.1944 -0.0005 8 6 4.3353 -2.4772 -0.0067 9 6 3.6812 -3.6848 0.1331 10 6 4.5851 -4.7513 0.0970 11 6 4.3071 -6.1208 0.2060 12 1 3.2833 -6.4637 0.2323 13 6 5.3580 -7.0455 0.2809 14 7 6.5927 -6.6462 0.1211 15 14 4.9943 -8.8482 0.6088 16 1 4.9133 -9.5795 -0.6810 17 1 6.0794 -9.4288 1.4398 18 1 3.7010 -8.9693 1.3285 19 16 6.1610 -3.9740 -0.1182 20 7 5.6338 -2.5037 -0.1501 21 6 2.1957 -1.1958 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6545 2.1324 -0.0004 26 1 4.1145 2.1448 0.0001 27 1 6.1513 -0.0952 -1.0184 28 1 6.1435 0.9726 0.4058 29 1 6.1545 -0.7946 0.6184 30 1 2.6134 -3.7917 0.2543 31 1 7.3200 -7.2860 0.1733 32 1 1.6557 -2.1312 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259435209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:01 Heat of formation + Delta-G solvation = 30.450904 kcal Electronic energy + Delta-G solvation = -16148.282408 eV Core-core repulsion = 13584.897964 eV Total energy + Delta-G solvation = -2563.384444 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -39.23900 -36.84154 -34.33035 -33.21298 -30.56813 -30.00034 -28.70413 -26.12893 -24.50754 -23.38259 -21.59643 -19.67298 -18.59367 -17.76771 -15.81348 -15.40067 -15.19880 -14.50115 -14.45091 -13.76030 -13.55193 -13.07193 -12.66893 -12.40372 -12.27280 -12.21813 -11.90240 -11.56421 -11.41687 -11.36766 -11.04371 -10.91969 -10.78139 -10.42844 -10.38096 -9.86145 -8.89250 -8.56699 -8.45917 -8.06627 -7.97916 -7.12125 -6.65409 -4.73236 1.66562 1.88964 2.58779 2.89496 2.94868 3.10388 3.52480 3.65442 3.82318 4.07393 4.52663 4.94309 5.20724 5.28222 5.47286 5.55537 5.71431 5.79714 5.93965 6.03439 6.09684 6.27287 6.48600 6.54664 6.60367 6.75038 6.91978 6.94686 6.95152 7.10167 7.29330 7.31218 7.49489 7.66418 7.86795 8.26284 8.37132 8.58321 9.76173 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.005561 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.642475 B = 5033.915009 C = 5882.026940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 C -0.104 4.104 3 C -0.130 4.130 4 C -0.128 4.128 5 C -0.067 4.067 6 C -0.103 4.103 7 C 0.004 3.996 8 C 0.152 3.848 9 C -0.372 4.372 10 C -0.004 4.004 11 C -0.373 4.373 12 H 0.094 0.906 13 C 0.055 3.945 14 N -0.774 5.774 15 Si 0.934 3.066 16 H -0.265 1.265 17 H -0.271 1.271 18 H -0.257 1.257 19 S 0.312 5.688 20 N -0.652 5.652 21 C -0.103 4.103 22 H 0.064 0.936 23 H 0.063 0.937 24 H 0.060 0.940 25 H 0.112 0.888 26 H 0.114 0.886 27 H 0.064 0.936 28 H 0.037 0.963 29 H 0.101 0.899 30 H 0.123 0.877 31 H 0.298 0.702 32 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.879 5.241 0.386 7.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.104 4.104 3 C -0.150 4.150 4 C -0.146 4.146 5 C -0.069 4.069 6 C -0.161 4.161 7 C -0.001 4.001 8 C -0.013 4.013 9 C -0.404 4.404 10 C -0.131 4.131 11 C -0.411 4.411 12 H 0.112 0.888 13 C -0.168 4.168 14 N -0.401 5.401 15 Si 0.757 3.243 16 H -0.190 1.190 17 H -0.196 1.196 18 H -0.181 1.181 19 S 0.468 5.532 20 N -0.481 5.481 21 C -0.123 4.123 22 H 0.083 0.917 23 H 0.082 0.918 24 H 0.079 0.921 25 H 0.130 0.870 26 H 0.132 0.868 27 H 0.082 0.918 28 H 0.056 0.944 29 H 0.119 0.881 30 H 0.141 0.859 31 H 0.110 0.890 32 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges -2.431 5.597 0.108 6.103 hybrid contribution -2.095 -0.823 0.307 2.272 sum -4.526 4.774 0.416 6.591 Atomic orbital electron populations 1.20710 0.91737 1.02188 1.01772 1.19702 0.95556 0.93100 1.02050 1.20859 0.94084 0.96913 1.03105 1.20891 0.93966 0.97155 1.02578 1.20070 0.96790 0.91862 0.98215 1.20947 0.90653 1.01326 1.03127 1.18548 0.92083 0.91411 0.98047 1.18813 0.88744 0.92055 1.01672 1.20872 0.99211 0.90627 1.29722 1.23646 0.97057 0.96868 0.95505 1.19045 0.94941 0.88967 1.38195 0.88805 1.26227 0.94286 1.03205 0.93059 1.69116 1.00433 1.38304 1.32290 0.85827 0.79790 0.79168 0.79500 1.19019 1.19580 1.18096 1.81975 1.13438 0.89886 1.67906 1.72296 1.14650 1.24379 1.36797 1.21105 0.93296 0.97460 1.00452 0.91730 0.91792 0.92122 0.86951 0.86750 0.91772 0.94356 0.88060 0.85886 0.89015 0.85832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.31 10.01 36.01 0.36 -0.95 16 2 C -0.10 -1.67 5.87 -104.67 -0.61 -2.28 16 3 C -0.13 -2.01 9.69 -39.52 -0.38 -2.39 16 4 C -0.13 -2.13 9.66 -39.63 -0.38 -2.51 16 5 C -0.07 -1.33 5.91 -104.29 -0.62 -1.95 16 6 C -0.10 -2.00 8.62 36.01 0.31 -1.68 16 7 C 0.00 0.08 5.87 -104.90 -0.62 -0.54 16 8 C 0.15 3.76 6.48 -84.25 -0.55 3.21 16 9 C -0.37 -9.38 9.81 -39.05 -0.38 -9.77 16 10 C 0.00 -0.10 6.40 -38.26 -0.24 -0.34 16 11 C -0.37 -9.26 9.39 -38.13 -0.36 -9.62 16 12 H 0.09 2.19 7.86 -52.49 -0.41 1.78 16 13 C 0.05 1.26 5.49 -17.28 -0.09 1.16 16 14 N -0.77 -18.21 11.01 55.56 0.61 -17.60 16 15 Si 0.93 16.95 29.57 -169.99 -5.03 11.93 16 16 H -0.27 -4.74 7.11 56.52 0.40 -4.34 16 17 H -0.27 -4.80 7.11 56.52 0.40 -4.40 16 18 H -0.26 -4.63 7.11 56.52 0.40 -4.23 16 19 S 0.31 7.97 20.82 -107.50 -2.24 5.73 16 20 N -0.65 -16.52 7.38 26.19 0.19 -16.32 16 21 C -0.10 -1.95 9.10 -39.26 -0.36 -2.31 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.06 0.75 8.08 -51.93 -0.42 0.33 16 24 H 0.06 0.63 8.08 -51.93 -0.42 0.21 16 25 H 0.11 1.39 8.06 -52.49 -0.42 0.97 16 26 H 0.11 1.60 8.06 -52.49 -0.42 1.18 16 27 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 28 H 0.04 0.62 8.04 -51.93 -0.42 0.20 16 29 H 0.10 2.22 5.76 -51.93 -0.30 1.92 16 30 H 0.12 2.88 6.71 -52.49 -0.35 2.53 16 31 H 0.30 6.24 8.29 -40.82 -0.34 5.90 16 32 H 0.12 2.26 6.50 -52.48 -0.34 1.92 16 LS Contribution 284.13 15.07 4.28 4.28 Total: -1.00 -27.24 284.13 -9.59 -36.83 By element: Atomic # 1 Polarization: 8.60 SS G_CDS: -3.49 Total: 5.12 kcal Atomic # 6 Polarization: -26.04 SS G_CDS: -3.93 Total: -29.96 kcal Atomic # 7 Polarization: -34.73 SS G_CDS: 0.81 Total: -33.92 kcal Atomic # 14 Polarization: 16.95 SS G_CDS: -5.03 Total: 11.93 kcal Atomic # 16 Polarization: 7.97 SS G_CDS: -2.24 Total: 5.73 kcal Total LS contribution 4.28 Total: 4.28 kcal Total: -27.24 -9.59 -36.83 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 67.282 kcal (2) G-P(sol) polarization free energy of solvation -27.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.041 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.590 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.831 kcal (6) G-S(sol) free energy of system = (1) + (5) 30.451 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.31 seconds