Wall clock time and date at job start Mon Mar 30 2020 07:08:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38340 * 119.93972 * 2 1 4 4 C 1.38303 * 120.24157 * 179.97438 * 3 2 1 5 5 C 1.38041 * 120.12062 * 0.02562 * 4 3 2 6 6 C 1.50705 * 120.05926 * 180.02562 * 5 4 3 7 7 C 1.39310 * 119.87815 * 0.02562 * 5 4 3 8 8 C 1.48405 * 120.11791 * 179.72582 * 7 5 4 9 9 C 1.38047 * 121.16349 * 173.14578 * 8 7 5 10 10 C 1.39846 * 110.98832 * 179.97438 * 9 8 7 11 11 C 1.40170 * 127.94543 * 179.97438 * 10 9 8 12 12 H 1.07999 * 120.00567 * 6.34524 * 11 10 9 13 13 C 1.40183 * 120.00055 * 186.33912 * 11 10 9 14 14 N 1.30753 * 119.99820 * 353.47660 * 13 11 10 15 15 Si 1.86802 * 120.00318 * 173.47686 * 13 11 10 16 16 H 1.48490 * 109.47339 * 94.97929 * 15 13 11 17 17 H 1.48495 * 109.47015 * 214.98699 * 15 13 11 18 18 H 1.48504 * 109.46908 * 334.98070 * 15 13 11 19 19 S 1.77031 * 104.10548 * 359.97438 * 10 9 8 20 20 N 1.30663 * 121.16885 * 352.86089 * 8 7 5 21 21 C 1.38001 * 119.94034 * 179.97438 * 2 1 3 22 22 H 1.09003 * 109.46955 * 90.00164 * 1 2 3 23 23 H 1.09004 * 109.47075 * 210.00026 * 1 2 3 24 24 H 1.08997 * 109.47113 * 330.00126 * 1 2 3 25 25 H 1.07998 * 119.87826 * 359.97438 * 3 2 1 26 26 H 1.08001 * 119.93955 * 179.97438 * 4 3 2 27 27 H 1.09001 * 109.46543 * 263.11314 * 6 5 4 28 28 H 1.08998 * 109.47237 * 23.11049 * 6 5 4 29 29 H 1.08994 * 109.47166 * 143.11665 * 6 5 4 30 30 H 1.07995 * 124.50841 * 359.97438 * 9 8 7 31 31 H 0.97003 * 120.00477 * 179.97438 * 14 13 11 32 32 H 1.08005 * 120.05756 * 0.03008 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1974 1.1988 0.0000 4 6 3.5804 1.2061 0.0005 5 6 4.2794 0.0157 0.0005 6 6 5.7865 0.0253 0.0017 7 6 3.5892 -1.1944 -0.0005 8 6 4.3353 -2.4772 -0.0067 9 6 3.6812 -3.6848 0.1331 10 6 4.5851 -4.7513 0.0970 11 6 4.3071 -6.1208 0.2060 12 1 3.2833 -6.4637 0.2323 13 6 5.3580 -7.0455 0.2809 14 7 6.5927 -6.6462 0.1211 15 14 4.9943 -8.8482 0.6088 16 1 4.9133 -9.5795 -0.6810 17 1 6.0794 -9.4288 1.4398 18 1 3.7010 -8.9693 1.3285 19 16 6.1610 -3.9740 -0.1182 20 7 5.6338 -2.5037 -0.1501 21 6 2.1957 -1.1958 0.0005 22 1 -0.3633 0.0000 -1.0277 23 1 -0.3633 -0.8900 0.5139 24 1 -0.3633 0.8900 0.5138 25 1 1.6545 2.1324 -0.0004 26 1 4.1145 2.1448 0.0001 27 1 6.1513 -0.0952 -1.0184 28 1 6.1435 0.9726 0.4058 29 1 6.1545 -0.7946 0.6184 30 1 2.6134 -3.7917 0.2543 31 1 7.3200 -7.2860 0.1733 32 1 1.6557 -2.1312 0.0005 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259435209.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:08:01 Heat of formation + Delta-G solvation = 17.579704 kcal Electronic energy + Delta-G solvation = -16148.840545 eV Core-core repulsion = 13584.897964 eV Total energy + Delta-G solvation = -2563.942581 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.34 seconds Orbital eigenvalues (eV) -40.72413 -38.55226 -36.14993 -34.58742 -32.08547 -31.78379 -30.03795 -27.95633 -25.88730 -24.91852 -23.17278 -21.20483 -20.29405 -19.68705 -17.54685 -17.08924 -16.62351 -15.95230 -15.92051 -15.29821 -15.02117 -14.38309 -14.22321 -13.98346 -13.87652 -13.56313 -13.30782 -13.17404 -13.02032 -12.91682 -12.55021 -12.37478 -12.15203 -11.93795 -11.79938 -11.53242 -10.85370 -10.30920 -10.09097 -9.97745 -9.36196 -8.89966 -8.49363 -6.67270 0.16908 0.52211 0.85130 1.38797 1.54506 1.57873 1.59602 2.08882 2.16757 2.24042 2.90455 3.14985 4.01036 4.03259 4.11399 4.23851 4.43375 4.56394 4.81825 4.87335 4.89093 4.92611 4.95628 4.99752 5.03479 5.18095 5.27236 5.38792 5.50373 5.55613 5.60320 5.75141 5.92310 5.97028 6.22027 6.37031 6.48487 6.70589 8.01831 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.031751 B = 0.005561 C = 0.004759 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.642475 B = 5033.915009 C = 5882.026940 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 C -0.100 4.100 3 C -0.117 4.117 4 C -0.124 4.124 5 C -0.089 4.089 6 C -0.096 4.096 7 C -0.040 4.040 8 C 0.148 3.852 9 C -0.400 4.400 10 C -0.028 4.028 11 C -0.393 4.393 12 H 0.103 0.897 13 C 0.017 3.983 14 N -0.793 5.793 15 Si 1.013 2.987 16 H -0.256 1.256 17 H -0.260 1.260 18 H -0.253 1.253 19 S 0.272 5.728 20 N -0.663 5.663 21 C -0.116 4.116 22 H 0.078 0.922 23 H 0.065 0.935 24 H 0.087 0.913 25 H 0.156 0.844 26 H 0.147 0.853 27 H 0.050 0.950 28 H 0.069 0.931 29 H 0.069 0.931 30 H 0.131 0.869 31 H 0.310 0.690 32 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.704 6.051 0.669 9.056 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.100 4.100 3 C -0.136 4.136 4 C -0.142 4.142 5 C -0.091 4.091 6 C -0.153 4.153 7 C -0.044 4.044 8 C -0.016 4.016 9 C -0.432 4.432 10 C -0.155 4.155 11 C -0.431 4.431 12 H 0.121 0.879 13 C -0.204 4.204 14 N -0.421 5.421 15 Si 0.831 3.169 16 H -0.180 1.180 17 H -0.184 1.184 18 H -0.176 1.176 19 S 0.427 5.573 20 N -0.492 5.492 21 C -0.136 4.136 22 H 0.097 0.903 23 H 0.084 0.916 24 H 0.106 0.894 25 H 0.174 0.826 26 H 0.164 0.836 27 H 0.069 0.931 28 H 0.088 0.912 29 H 0.087 0.913 30 H 0.149 0.851 31 H 0.123 0.877 32 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.251 6.445 0.385 7.731 hybrid contribution -1.583 -0.997 0.215 1.883 sum -5.834 5.448 0.600 8.005 Atomic orbital electron populations 1.20790 0.88673 1.03655 1.03099 1.20163 0.97749 0.92160 0.99961 1.21388 0.93737 0.98305 1.00158 1.21247 0.94864 0.96996 1.01053 1.20241 0.96885 0.92564 0.99410 1.20792 0.91055 1.01647 1.01792 1.18694 0.93311 0.90756 1.01649 1.19333 0.88810 0.93689 0.99778 1.21062 0.99615 0.90918 1.31637 1.24042 0.97288 0.98005 0.96158 1.19492 0.96237 0.89036 1.38366 0.87923 1.27293 0.93506 1.07762 0.91812 1.69165 1.01553 1.40435 1.30903 0.84688 0.79897 0.72599 0.79725 1.18011 1.18418 1.17650 1.81802 1.14325 0.91062 1.70072 1.72462 1.15099 1.23383 1.38252 1.21213 0.92383 0.98849 1.01148 0.90319 0.91635 0.89449 0.82605 0.83556 0.93117 0.91183 0.91278 0.85137 0.87690 0.86382 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.19 10.01 71.24 0.71 -1.48 16 2 C -0.10 -2.96 5.87 -19.90 -0.12 -3.07 16 3 C -0.12 -3.12 9.69 22.31 0.22 -2.91 16 4 C -0.12 -3.77 9.66 22.24 0.21 -3.55 16 5 C -0.09 -3.51 5.91 -19.65 -0.12 -3.62 16 6 C -0.10 -3.76 8.62 71.24 0.61 -3.15 16 7 C -0.04 -1.78 5.87 -20.04 -0.12 -1.89 16 8 C 0.15 7.77 6.48 41.98 0.27 8.04 16 9 C -0.40 -21.34 9.81 22.61 0.22 -21.12 16 10 C -0.03 -1.56 6.40 23.13 0.15 -1.41 16 11 C -0.39 -20.02 9.39 23.21 0.22 -19.81 16 12 H 0.10 4.88 7.86 -2.91 -0.02 4.86 16 13 C 0.02 0.78 5.49 85.33 0.47 1.25 16 14 N -0.79 -37.87 11.01 21.87 0.24 -37.63 16 15 Si 1.01 33.78 29.57 68.60 2.03 35.81 16 16 H -0.26 -8.15 7.11 99.48 0.71 -7.44 16 17 H -0.26 -8.19 7.11 99.48 0.71 -7.48 16 18 H -0.25 -8.23 7.11 99.48 0.71 -7.53 16 19 S 0.27 14.77 20.82 -56.49 -1.18 13.59 16 20 N -0.66 -35.70 7.38 -71.05 -0.52 -36.22 16 21 C -0.12 -4.39 9.10 22.48 0.20 -4.19 16 22 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 23 H 0.06 1.35 8.08 -2.39 -0.02 1.34 16 24 H 0.09 1.38 8.08 -2.39 -0.02 1.36 16 25 H 0.16 2.86 8.06 -2.91 -0.02 2.84 16 26 H 0.15 3.47 8.06 -2.91 -0.02 3.45 16 27 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 28 H 0.07 2.21 8.04 -2.39 -0.02 2.20 16 29 H 0.07 3.19 5.76 -2.39 -0.01 3.18 16 30 H 0.13 6.47 6.71 -2.91 -0.02 6.45 16 31 H 0.31 12.98 8.29 -92.71 -0.77 12.21 16 32 H 0.12 4.46 6.50 -2.91 -0.02 4.44 16 Total: -1.00 -62.64 284.13 4.64 -58.00 By element: Atomic # 1 Polarization: 22.23 SS G_CDS: 1.13 Total: 23.36 kcal Atomic # 6 Polarization: -59.85 SS G_CDS: 2.94 Total: -56.90 kcal Atomic # 7 Polarization: -73.57 SS G_CDS: -0.28 Total: -73.85 kcal Atomic # 14 Polarization: 33.78 SS G_CDS: 2.03 Total: 35.81 kcal Atomic # 16 Polarization: 14.77 SS G_CDS: -1.18 Total: 13.59 kcal Total: -62.64 4.64 -58.00 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259435209.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.577 kcal (2) G-P(sol) polarization free energy of solvation -62.639 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.938 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.642 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.998 kcal (6) G-S(sol) free energy of system = (1) + (5) 17.580 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.34 seconds