Wall clock time and date at job start Mon Mar 30 2020 07:09:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.37990 * 120.07073 * 2 1 4 4 C 1.38329 * 120.14519 * 180.02562 * 3 2 1 5 5 C 1.38377 * 120.28520 * 0.02562 * 4 3 2 6 6 C 1.37947 * 120.14016 * 359.69676 * 5 4 3 7 7 C 1.39521 * 120.07546 * 180.02562 * 2 1 3 8 8 C 1.47870 * 120.14134 * 359.94972 * 7 2 1 9 9 N 1.30225 * 125.47125 * 172.00215 * 8 7 2 10 10 C 1.31308 * 117.03931 * 180.02562 * 9 8 7 11 11 C 1.50704 * 122.07437 * 179.97438 * 10 9 8 12 12 C 1.50697 * 109.47156 * 305.01942 * 11 10 9 13 13 H 1.08000 * 120.00026 * 0.02562 * 12 11 10 14 14 C 1.37877 * 119.99907 * 180.02562 * 12 11 10 15 15 N 1.31510 * 120.00310 * 359.97438 * 14 12 11 16 16 Si 1.86804 * 119.99841 * 180.02562 * 14 12 11 17 17 H 1.48498 * 109.47154 * 359.97438 * 16 14 12 18 18 H 1.48493 * 109.47024 * 120.00153 * 16 14 12 19 19 H 1.48504 * 109.46928 * 239.99735 * 16 14 12 20 20 C 1.33726 * 115.84972 * 359.97438 * 10 9 8 21 21 S 1.76177 * 125.47222 * 352.00457 * 8 7 2 22 22 H 1.09007 * 109.46907 * 262.51848 * 1 2 3 23 23 H 1.09000 * 109.47787 * 22.51618 * 1 2 3 24 24 H 1.09006 * 109.47442 * 142.52467 * 1 2 3 25 25 H 1.08005 * 119.93011 * 0.04121 * 3 2 1 26 26 H 1.07998 * 119.86097 * 179.97438 * 4 3 2 27 27 H 1.08003 * 119.92859 * 180.02562 * 5 4 3 28 28 H 1.08004 * 120.07011 * 180.30275 * 6 5 4 29 29 H 1.09005 * 109.47105 * 65.02460 * 11 10 9 30 30 H 1.09000 * 109.47282 * 185.01533 * 11 10 9 31 31 H 0.96998 * 120.00704 * 179.97438 * 15 14 12 32 32 H 1.07995 * 125.89241 * 179.74132 * 20 10 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1984 1.1942 0.0000 4 6 3.5817 1.1960 -0.0005 5 6 4.2811 0.0020 -0.0016 6 6 3.6018 -1.1987 0.0042 7 6 2.2062 -1.2074 -0.0005 8 6 1.4716 -2.4908 0.0000 9 7 2.0077 -3.6683 -0.1480 10 6 1.1970 -4.7009 -0.1211 11 6 1.6954 -6.1140 -0.2815 12 6 2.4832 -6.2266 -1.5612 13 1 2.6107 -5.3613 -2.1948 14 6 3.0413 -7.4343 -1.9232 15 7 2.8866 -8.4879 -1.1515 16 14 4.0186 -7.5736 -3.5091 17 1 4.0455 -6.2549 -4.1915 18 1 5.4069 -7.9996 -3.1992 19 1 3.3796 -8.5773 -4.3977 20 6 -0.0983 -4.4207 0.0575 21 16 -0.2692 -2.6723 0.2009 22 1 -0.3633 -0.1338 1.0190 23 1 -0.3635 0.9493 -0.3935 24 1 -0.3634 -0.8156 -0.6253 25 1 1.6584 2.1295 0.0007 26 1 4.1182 2.1333 -0.0010 27 1 5.3611 0.0101 -0.0016 28 1 4.1488 -2.1299 0.0083 29 1 2.3348 -6.3719 0.5628 30 1 0.8466 -6.7970 -0.3161 31 1 3.2789 -9.3376 -1.4063 32 1 -0.9017 -5.1410 0.1014 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259446807.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:09:24 Heat of formation + Delta-G solvation = 38.491010 kcal Electronic energy + Delta-G solvation = -16008.141489 eV Core-core repulsion = 13445.105689 eV Total energy + Delta-G solvation = -2563.035799 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -40.85620 -39.87779 -35.37087 -34.16541 -33.17364 -31.27581 -29.24492 -28.07926 -26.08823 -25.17074 -22.94929 -21.85673 -20.14363 -18.90909 -18.30636 -17.34499 -16.65626 -16.34968 -16.15903 -15.73738 -15.17177 -14.68453 -14.55686 -14.19636 -14.09576 -13.86787 -13.68767 -13.51486 -13.07416 -12.84144 -12.71066 -12.36808 -12.01980 -11.96902 -11.60789 -11.35477 -10.73752 -10.59756 -10.49389 -9.96569 -9.61260 -9.01418 -8.24297 -6.34624 -0.60848 0.43131 0.44159 0.65591 0.84037 1.34632 1.35753 1.49599 2.05453 2.39414 2.87673 3.05769 3.12730 3.87199 3.91652 4.14436 4.21933 4.39635 4.40665 4.57188 4.65670 4.68313 4.76393 4.83198 5.06797 5.13523 5.22373 5.31765 5.38354 5.51809 5.58769 5.61631 5.68717 6.04030 6.12416 6.73319 7.02764 7.32288 8.86688 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.022903 B = 0.005781 C = 0.004878 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1222.241540 B = 4842.220175 C = 5738.119191 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.134 4.134 2 C -0.071 4.071 3 C -0.116 4.116 4 C -0.096 4.096 5 C -0.130 4.130 6 C -0.096 4.096 7 C -0.053 4.053 8 C 0.085 3.915 9 N -0.484 5.484 10 C 0.076 3.924 11 C 0.089 3.911 12 C -0.519 4.519 13 H 0.045 0.955 14 C 0.005 3.995 15 N -0.930 5.930 16 Si 0.966 3.034 17 H -0.272 1.272 18 H -0.274 1.274 19 H -0.270 1.270 20 C -0.301 4.301 21 S 0.153 5.847 22 H 0.091 0.909 23 H 0.115 0.885 24 H 0.065 0.935 25 H 0.166 0.834 26 H 0.162 0.838 27 H 0.145 0.855 28 H 0.106 0.894 29 H 0.004 0.996 30 H 0.022 0.978 31 H 0.267 0.733 32 H 0.182 0.818 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.455 22.545 2.994 23.175 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.074 4.074 3 C -0.133 4.133 4 C -0.115 4.115 5 C -0.148 4.148 6 C -0.118 4.118 7 C -0.057 4.057 8 C -0.190 4.190 9 N -0.199 5.199 10 C -0.055 4.055 11 C 0.049 3.951 12 C -0.558 4.558 13 H 0.064 0.936 14 C -0.193 4.193 15 N -0.570 5.570 16 Si 0.791 3.209 17 H -0.197 1.197 18 H -0.199 1.199 19 H -0.195 1.195 20 C -0.438 4.438 21 S 0.410 5.590 22 H 0.110 0.890 23 H 0.134 0.866 24 H 0.083 0.917 25 H 0.183 0.817 26 H 0.180 0.820 27 H 0.163 0.837 28 H 0.124 0.876 29 H 0.022 0.978 30 H 0.040 0.960 31 H 0.076 0.924 32 H 0.199 0.801 Dipole moment (debyes) X Y Z Total from point charges -4.799 22.870 3.102 23.573 hybrid contribution 0.945 -2.153 -0.729 2.462 sum -3.854 20.717 2.373 21.205 Atomic orbital electron populations 1.21154 0.89837 1.04304 1.03897 1.20200 0.97032 0.91608 0.98532 1.21342 0.94553 0.97384 1.00034 1.21716 0.94485 0.98730 0.96521 1.21382 1.01268 0.91583 1.00599 1.21336 0.92935 0.99409 0.98080 1.18014 0.93244 0.88211 1.06194 1.26424 0.93884 0.94981 1.03676 1.66277 1.39031 0.98177 1.16410 1.20582 0.89613 0.96372 0.98893 1.17722 0.95465 0.85553 0.96324 1.21242 1.33014 0.95334 1.06171 0.93643 1.25876 0.97361 0.95175 1.00872 1.70061 1.46345 1.01233 1.39363 0.85380 0.78473 0.78125 0.78949 1.19706 1.19889 1.19533 1.27496 1.00331 1.02587 1.13342 1.84274 1.07704 0.97985 1.69026 0.89018 0.86636 0.91723 0.81671 0.82010 0.83702 0.87553 0.97758 0.95969 0.92442 0.80061 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.36 8.25 71.23 0.59 -1.77 16 2 C -0.07 -1.63 5.91 -19.62 -0.12 -1.74 16 3 C -0.12 -1.92 9.66 22.23 0.21 -1.71 16 4 C -0.10 -1.59 10.04 22.32 0.22 -1.36 16 5 C -0.13 -2.93 10.03 22.23 0.22 -2.70 16 6 C -0.10 -3.03 9.68 22.52 0.22 -2.81 16 7 C -0.05 -1.68 5.87 -20.10 -0.12 -1.80 16 8 C 0.08 3.26 7.23 87.48 0.63 3.90 16 9 N -0.48 -23.39 9.96 -177.79 -1.77 -25.16 16 10 C 0.08 3.77 5.99 41.61 0.25 4.02 16 11 C 0.09 5.15 5.45 29.10 0.16 5.31 16 12 C -0.52 -32.07 8.97 25.60 0.23 -31.84 16 13 H 0.05 2.86 7.72 -2.91 -0.02 2.84 16 14 C 0.01 0.30 5.46 84.66 0.46 0.76 16 15 N -0.93 -57.95 13.29 21.45 0.28 -57.66 16 16 Si 0.97 46.86 29.54 68.60 2.03 48.89 16 17 H -0.27 -13.08 7.11 99.48 0.71 -12.37 16 18 H -0.27 -12.77 7.11 99.48 0.71 -12.06 16 19 H -0.27 -12.43 7.11 99.48 0.71 -11.72 16 20 C -0.30 -12.12 11.02 66.79 0.74 -11.38 16 21 S 0.15 4.73 18.39 -56.49 -1.04 3.69 16 22 H 0.09 1.45 7.82 -2.38 -0.02 1.43 16 23 H 0.12 1.23 8.03 -2.39 -0.02 1.22 16 24 H 0.06 1.38 4.89 -18.78 -0.09 1.29 16 25 H 0.17 1.45 8.05 -2.91 -0.02 1.43 16 26 H 0.16 1.46 8.06 -2.91 -0.02 1.44 16 27 H 0.15 2.58 8.06 -2.91 -0.02 2.55 16 28 H 0.11 3.93 7.84 -2.91 -0.02 3.91 16 29 H 0.00 0.27 8.14 -2.38 -0.02 0.25 16 30 H 0.02 1.30 8.01 -2.39 -0.02 1.28 16 31 H 0.27 15.44 8.31 -92.71 -0.77 14.67 16 32 H 0.18 6.51 8.06 -2.91 -0.02 6.48 16 Total: -1.00 -74.98 289.05 4.25 -70.74 By element: Atomic # 1 Polarization: 1.59 SS G_CDS: 1.04 Total: 2.63 kcal Atomic # 6 Polarization: -46.83 SS G_CDS: 3.70 Total: -43.13 kcal Atomic # 7 Polarization: -81.34 SS G_CDS: -1.49 Total: -82.82 kcal Atomic # 14 Polarization: 46.86 SS G_CDS: 2.03 Total: 48.89 kcal Atomic # 16 Polarization: 4.73 SS G_CDS: -1.04 Total: 3.69 kcal Total: -74.98 4.25 -70.74 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259446807.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.229 kcal (2) G-P(sol) polarization free energy of solvation -74.984 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.245 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.246 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.738 kcal (6) G-S(sol) free energy of system = (1) + (5) 38.491 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds