Wall clock time and date at job start Mon Mar 30 2020 07:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38341 * 119.86257 * 2 1 4 4 C 1.37977 * 120.14111 * 180.25836 * 3 2 1 5 5 C 1.39525 * 119.85522 * 359.46823 * 4 3 2 6 6 C 1.47929 * 120.13796 * 180.23342 * 5 4 3 7 7 C 1.37696 * 127.79130 * 179.97438 * 6 5 4 8 8 C 1.37326 * 114.33877 * 179.97438 * 7 6 5 9 9 C 1.50700 * 120.77133 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.47052 * 125.00030 * 9 8 7 11 11 H 1.07992 * 120.00027 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31527 * 120.00194 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47398 * 89.99527 * 14 12 10 16 16 H 1.48497 * 109.47386 * 210.00169 * 14 12 10 17 17 H 1.48506 * 109.46653 * 329.99899 * 14 12 10 18 18 N 1.30014 * 118.46143 * 0.02562 * 8 7 6 19 19 S 1.69692 * 107.56836 * 359.75872 * 18 8 7 20 20 C 1.39519 * 119.72369 * 0.25253 * 5 4 3 21 21 C 1.37973 * 119.85775 * 0.02562 * 20 5 4 22 22 H 1.09004 * 109.46851 * 270.29819 * 1 2 3 23 23 H 1.08994 * 109.46801 * 30.29626 * 1 2 3 24 24 H 1.09000 * 109.47359 * 150.29600 * 1 2 3 25 25 H 1.08004 * 119.93275 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.07529 * 179.75061 * 4 3 2 27 27 H 1.08003 * 122.82801 * 359.96969 * 7 6 5 28 28 H 1.08991 * 109.47543 * 245.00205 * 9 8 7 29 29 H 1.09007 * 109.47121 * 5.00389 * 9 8 7 30 30 H 0.96993 * 119.99648 * 179.97438 * 13 12 10 31 31 H 1.07999 * 120.06846 * 180.02562 * 20 5 4 32 32 H 1.07995 * 119.93156 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5756 1.2064 -0.0054 5 6 4.2761 -0.0002 0.0004 6 6 5.7553 -0.0003 -0.0001 7 6 6.5991 -1.0885 0.0055 8 6 7.9347 -0.7691 0.0028 9 6 8.9857 -1.8490 0.0076 10 6 9.9192 -1.6468 -1.1581 11 1 9.7669 -0.8188 -1.8345 12 6 10.9676 -2.5188 -1.3610 13 7 11.1529 -3.5275 -0.5375 14 14 12.1252 -2.2678 -2.8055 15 1 13.2545 -1.3980 -2.3896 16 1 12.6514 -3.5825 -3.2524 17 1 11.3895 -1.6233 -3.9230 18 7 8.2714 0.4867 -0.0041 19 16 6.8415 1.4004 -0.0146 20 6 3.5755 -1.2068 0.0063 21 6 2.1958 -1.1999 0.0058 22 1 -0.3633 0.0053 1.0277 23 1 -0.3633 0.8873 -0.5184 24 1 -0.3634 -0.8926 -0.5092 25 1 1.6525 2.1331 0.0004 26 1 4.1123 2.1437 -0.0094 27 1 6.2406 -2.1072 0.0117 28 1 9.5511 -1.8017 0.9382 29 1 8.5053 -2.8239 -0.0765 30 1 11.8903 -4.1412 -0.6806 31 1 4.1121 -2.1440 0.0112 32 1 1.6523 -2.1332 0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259618380.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:41 Heat of formation + Delta-G solvation = 45.457066 kcal Electronic energy + Delta-G solvation = -15515.961161 eV Core-core repulsion = 12953.227432 eV Total energy + Delta-G solvation = -2562.733728 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.36 seconds Orbital eigenvalues (eV) -39.48767 -38.11512 -33.84664 -32.85674 -31.11560 -30.26172 -28.81022 -26.91641 -24.25796 -22.96683 -22.21330 -20.45751 -18.60676 -17.61822 -16.50599 -15.93289 -15.27384 -15.06548 -14.63009 -14.05485 -13.88084 -13.59243 -13.55601 -12.91895 -12.52126 -12.42037 -12.29556 -11.87570 -11.64133 -11.33570 -11.20548 -10.79342 -10.77719 -10.49171 -10.14951 -9.72777 -9.47957 -9.35975 -9.06646 -8.46908 -8.06177 -7.89671 -6.07739 -4.09453 0.50143 1.30542 1.82625 1.89632 2.53737 3.20463 3.32079 3.37786 3.43144 3.77549 4.43417 4.55586 4.68739 4.76668 4.89761 5.11766 5.28763 5.29846 5.36127 5.51348 5.56850 5.72512 5.75821 5.86642 5.97036 6.11951 6.33044 6.44406 6.47780 6.72670 6.85023 7.05175 7.40444 7.71075 7.90510 8.24021 8.93426 9.53689 11.03264 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.004154 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.672914 B = 6738.920595 C = 7130.049706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.087 4.087 3 C -0.118 4.118 4 C -0.102 4.102 5 C -0.009 4.009 6 C -0.120 4.120 7 C -0.171 4.171 8 C 0.151 3.849 9 C 0.079 3.921 10 C -0.507 4.507 11 H 0.060 0.940 12 C 0.058 3.942 13 N -0.896 5.896 14 Si 0.899 3.101 15 H -0.279 1.279 16 H -0.286 1.286 17 H -0.274 1.274 18 N -0.424 5.424 19 S 0.139 5.861 20 C -0.092 4.092 21 C -0.118 4.118 22 H 0.070 0.930 23 H 0.065 0.935 24 H 0.066 0.934 25 H 0.124 0.876 26 H 0.125 0.875 27 H 0.155 0.845 28 H 0.045 0.955 29 H 0.043 0.957 30 H 0.263 0.737 31 H 0.130 0.870 32 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.235 5.830 1.923 21.145 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.088 4.088 3 C -0.136 4.136 4 C -0.122 4.122 5 C -0.012 4.012 6 C -0.248 4.248 7 C -0.206 4.206 8 C -0.026 4.026 9 C 0.037 3.963 10 C -0.547 4.547 11 H 0.078 0.922 12 C -0.143 4.143 13 N -0.535 5.535 14 Si 0.726 3.274 15 H -0.205 1.205 16 H -0.211 1.211 17 H -0.198 1.198 18 N -0.243 5.243 19 S 0.294 5.706 20 C -0.113 4.113 21 C -0.136 4.136 22 H 0.088 0.912 23 H 0.084 0.916 24 H 0.085 0.915 25 H 0.142 0.858 26 H 0.143 0.857 27 H 0.173 0.827 28 H 0.063 0.937 29 H 0.061 0.939 30 H 0.072 0.928 31 H 0.148 0.852 32 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.129 7.801 1.939 20.750 hybrid contribution 0.249 -1.627 -0.767 1.816 sum -18.881 6.174 1.172 19.899 Atomic orbital electron populations 1.20797 0.91187 1.02775 1.02296 1.20007 0.96105 0.93192 0.99517 1.20906 0.93662 0.97658 1.01368 1.21247 0.94297 0.97124 0.99496 1.17887 0.88310 0.93859 1.01097 1.24617 0.95911 0.97835 1.06479 1.21758 0.91845 1.00298 1.06667 1.22183 0.95153 0.93465 0.91812 1.18274 0.90207 0.88729 0.99078 1.21017 1.11179 1.11921 1.10541 0.92165 1.24975 0.97561 0.95036 0.96737 1.69944 1.31065 1.15316 1.37143 0.86473 0.80989 0.77407 0.82488 1.20530 1.21128 1.19836 1.77073 1.14752 1.07275 1.25162 1.84700 0.96679 1.16838 1.72393 1.21271 0.94028 0.97431 0.98547 1.20962 0.93782 0.97664 1.01191 0.91160 0.91569 0.91502 0.85778 0.85706 0.82740 0.93710 0.93913 0.92750 0.85214 0.85661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.77 10.00 36.01 0.36 -0.41 16 2 C -0.09 -0.85 5.89 -104.54 -0.62 -1.47 16 3 C -0.12 -1.22 9.68 -39.64 -0.38 -1.60 16 4 C -0.10 -1.26 9.66 -39.20 -0.38 -1.64 16 5 C -0.01 -0.13 5.87 -104.97 -0.62 -0.75 16 6 C -0.12 -2.03 6.65 -35.81 -0.24 -2.27 16 7 C -0.17 -3.19 9.46 -40.11 -0.38 -3.57 16 8 C 0.15 3.40 5.99 -83.69 -0.50 2.90 16 9 C 0.08 2.03 5.41 -29.03 -0.16 1.87 16 10 C -0.51 -14.45 8.94 -34.44 -0.31 -14.76 16 11 H 0.06 1.75 7.70 -52.49 -0.40 1.35 16 12 C 0.06 1.66 5.46 -17.82 -0.10 1.56 16 13 N -0.90 -26.23 13.29 55.43 0.74 -25.50 16 14 Si 0.90 21.92 29.54 -169.99 -5.02 16.90 16 15 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 16 H -0.29 -6.80 7.11 56.52 0.40 -6.40 16 17 H -0.27 -6.61 7.11 56.52 0.40 -6.21 16 18 N -0.42 -9.75 11.74 32.27 0.38 -9.37 16 19 S 0.14 2.51 23.20 -107.50 -2.49 0.02 16 20 C -0.09 -1.14 9.61 -39.20 -0.38 -1.52 16 21 C -0.12 -1.22 9.68 -39.63 -0.38 -1.61 16 22 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 23 H 0.07 0.39 8.08 -51.93 -0.42 -0.03 16 24 H 0.07 0.40 8.08 -51.93 -0.42 -0.02 16 25 H 0.12 0.98 8.06 -52.48 -0.42 0.56 16 26 H 0.13 1.44 7.50 -52.49 -0.39 1.05 16 27 H 0.16 2.50 7.24 -52.48 -0.38 2.12 16 28 H 0.05 1.22 8.14 -51.93 -0.42 0.80 16 29 H 0.04 1.09 7.98 -51.93 -0.41 0.67 16 30 H 0.26 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.13 1.48 7.06 -52.49 -0.37 1.10 16 32 H 0.13 1.01 8.06 -52.49 -0.42 0.58 16 LS Contribution 295.74 15.07 4.46 4.46 Total: -1.00 -30.97 295.74 -9.65 -40.62 By element: Atomic # 1 Polarization: -0.24 SS G_CDS: -3.63 Total: -3.87 kcal Atomic # 6 Polarization: -19.18 SS G_CDS: -4.08 Total: -23.25 kcal Atomic # 7 Polarization: -35.98 SS G_CDS: 1.12 Total: -34.87 kcal Atomic # 14 Polarization: 21.92 SS G_CDS: -5.02 Total: 16.90 kcal Atomic # 16 Polarization: 2.51 SS G_CDS: -2.49 Total: 0.02 kcal Total LS contribution 4.46 Total: 4.46 kcal Total: -30.97 -9.65 -40.62 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618380.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.073 kcal (2) G-P(sol) polarization free energy of solvation -30.969 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 55.103 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 45.457 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.36 seconds