Wall clock time and date at job start Mon Mar 30 2020 07:07:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38341 * 119.86257 * 2 1 4 4 C 1.37977 * 120.14111 * 180.25836 * 3 2 1 5 5 C 1.39525 * 119.85522 * 359.46823 * 4 3 2 6 6 C 1.47929 * 120.13796 * 180.23342 * 5 4 3 7 7 C 1.37696 * 127.79130 * 179.97438 * 6 5 4 8 8 C 1.37326 * 114.33877 * 179.97438 * 7 6 5 9 9 C 1.50700 * 120.77133 * 180.02562 * 8 7 6 10 10 C 1.50707 * 109.47052 * 125.00030 * 9 8 7 11 11 H 1.07992 * 120.00027 * 0.02562 * 10 9 8 12 12 C 1.37872 * 119.99914 * 180.02562 * 10 9 8 13 13 N 1.31527 * 120.00194 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00255 * 180.02562 * 12 10 9 15 15 H 1.48491 * 109.47398 * 89.99527 * 14 12 10 16 16 H 1.48497 * 109.47386 * 210.00169 * 14 12 10 17 17 H 1.48506 * 109.46653 * 329.99899 * 14 12 10 18 18 N 1.30014 * 118.46143 * 0.02562 * 8 7 6 19 19 S 1.69692 * 107.56836 * 359.75872 * 18 8 7 20 20 C 1.39519 * 119.72369 * 0.25253 * 5 4 3 21 21 C 1.37973 * 119.85775 * 0.02562 * 20 5 4 22 22 H 1.09004 * 109.46851 * 270.29819 * 1 2 3 23 23 H 1.08994 * 109.46801 * 30.29626 * 1 2 3 24 24 H 1.09000 * 109.47359 * 150.29600 * 1 2 3 25 25 H 1.08004 * 119.93275 * 0.02562 * 3 2 1 26 26 H 1.08002 * 120.07529 * 179.75061 * 4 3 2 27 27 H 1.08003 * 122.82801 * 359.96969 * 7 6 5 28 28 H 1.08991 * 109.47543 * 245.00205 * 9 8 7 29 29 H 1.09007 * 109.47121 * 5.00389 * 9 8 7 30 30 H 0.96993 * 119.99648 * 179.97438 * 13 12 10 31 31 H 1.07999 * 120.06846 * 180.02562 * 20 5 4 32 32 H 1.07995 * 119.93156 * 179.97438 * 21 20 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1958 1.1997 0.0000 4 6 3.5756 1.2064 -0.0054 5 6 4.2761 -0.0002 0.0004 6 6 5.7553 -0.0003 -0.0001 7 6 6.5991 -1.0885 0.0055 8 6 7.9347 -0.7691 0.0028 9 6 8.9857 -1.8490 0.0076 10 6 9.9192 -1.6468 -1.1581 11 1 9.7669 -0.8188 -1.8345 12 6 10.9676 -2.5188 -1.3610 13 7 11.1529 -3.5275 -0.5375 14 14 12.1252 -2.2678 -2.8055 15 1 13.2545 -1.3980 -2.3896 16 1 12.6514 -3.5825 -3.2524 17 1 11.3895 -1.6233 -3.9230 18 7 8.2714 0.4867 -0.0041 19 16 6.8415 1.4004 -0.0146 20 6 3.5755 -1.2068 0.0063 21 6 2.1958 -1.1999 0.0058 22 1 -0.3633 0.0053 1.0277 23 1 -0.3633 0.8873 -0.5184 24 1 -0.3634 -0.8926 -0.5092 25 1 1.6525 2.1331 0.0004 26 1 4.1123 2.1437 -0.0094 27 1 6.2406 -2.1072 0.0117 28 1 9.5511 -1.8017 0.9382 29 1 8.5053 -2.8239 -0.0765 30 1 11.8903 -4.1412 -0.6806 31 1 4.1121 -2.1440 0.0112 32 1 1.6523 -2.1332 0.0099 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259618380.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:41 Heat of formation + Delta-G solvation = 29.005577 kcal Electronic energy + Delta-G solvation = -15516.674551 eV Core-core repulsion = 12953.227432 eV Total energy + Delta-G solvation = -2563.447118 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -40.48450 -39.58662 -35.29482 -34.54738 -31.99735 -31.48997 -30.78534 -27.92937 -26.08989 -23.97349 -23.40700 -21.66607 -20.16196 -18.98248 -18.51221 -17.26346 -16.58113 -16.13728 -15.97393 -15.39700 -15.23918 -14.61467 -14.40162 -14.29833 -14.11951 -13.83060 -13.50850 -13.05934 -13.03529 -12.74860 -12.67606 -12.36774 -12.21991 -12.02409 -11.77745 -11.53259 -11.15261 -10.93493 -10.63409 -9.92762 -9.52802 -9.10486 -8.25178 -6.35010 -0.74298 0.44990 0.46895 0.66199 0.94547 1.37540 1.39173 1.49979 1.67404 2.39377 2.84430 3.08241 3.37238 3.88062 4.01627 4.04126 4.21810 4.29945 4.44638 4.49919 4.64489 4.82287 4.89521 4.92143 4.95799 5.11325 5.16416 5.27106 5.29961 5.43168 5.53741 5.65245 5.66347 5.94308 6.01659 6.15394 6.72456 7.31794 8.85858 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.036513 B = 0.004154 C = 0.003926 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 766.672914 B = 6738.920595 C = 7130.049706 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.076 4.076 3 C -0.121 4.121 4 C -0.105 4.105 5 C -0.048 4.048 6 C -0.085 4.085 7 C -0.201 4.201 8 C 0.140 3.860 9 C 0.085 3.915 10 C -0.527 4.527 11 H 0.047 0.953 12 C 0.010 3.990 13 N -0.925 5.925 14 Si 0.964 3.036 15 H -0.275 1.275 16 H -0.272 1.272 17 H -0.270 1.270 18 N -0.483 5.483 19 S 0.175 5.825 20 C -0.095 4.095 21 C -0.122 4.122 22 H 0.083 0.917 23 H 0.078 0.922 24 H 0.078 0.922 25 H 0.152 0.848 26 H 0.128 0.872 27 H 0.173 0.827 28 H 0.016 0.984 29 H 0.037 0.963 30 H 0.268 0.732 31 H 0.133 0.867 32 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.207 6.429 1.201 24.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.076 4.076 3 C -0.139 4.139 4 C -0.125 4.125 5 C -0.050 4.050 6 C -0.214 4.214 7 C -0.234 4.234 8 C -0.036 4.036 9 C 0.044 3.956 10 C -0.566 4.566 11 H 0.065 0.935 12 C -0.189 4.189 13 N -0.564 5.564 14 Si 0.789 3.211 15 H -0.201 1.201 16 H -0.197 1.197 17 H -0.195 1.195 18 N -0.303 5.303 19 S 0.330 5.670 20 C -0.116 4.116 21 C -0.140 4.140 22 H 0.101 0.899 23 H 0.097 0.903 24 H 0.097 0.903 25 H 0.170 0.830 26 H 0.146 0.854 27 H 0.191 0.809 28 H 0.034 0.966 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.151 0.849 32 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges -22.097 8.386 1.222 23.667 hybrid contribution 0.875 -1.719 -0.498 1.992 sum -21.223 6.668 0.725 22.257 Atomic orbital electron populations 1.20894 0.88642 1.04083 1.03466 1.20485 0.97967 0.92658 0.96535 1.21252 0.92830 0.99280 1.00516 1.21402 0.95455 0.96516 0.99135 1.17965 0.86483 0.95561 1.05001 1.24996 0.97368 0.96394 1.02647 1.21708 0.90517 1.01847 1.09332 1.21890 0.95827 0.92759 0.93096 1.17976 0.90681 0.90006 0.96959 1.21238 1.12350 1.11714 1.11285 0.93451 1.25812 0.99017 0.94638 0.99441 1.70040 1.31777 1.15963 1.38637 0.85457 0.78709 0.77847 0.79097 1.20100 1.19718 1.19490 1.76789 1.18468 1.07963 1.27109 1.84366 0.94917 1.15892 1.71795 1.21454 0.95147 0.96954 0.98050 1.21301 0.92976 0.99271 1.00480 0.89863 0.90263 0.90332 0.83012 0.85442 0.80947 0.96561 0.94438 0.92316 0.84893 0.83094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.01 10.00 71.24 0.71 -0.30 16 2 C -0.08 -1.18 5.89 -19.81 -0.12 -1.29 16 3 C -0.12 -2.06 9.68 22.23 0.22 -1.85 16 4 C -0.11 -2.37 9.66 22.52 0.22 -2.16 16 5 C -0.05 -1.28 5.87 -20.09 -0.12 -1.40 16 6 C -0.08 -2.86 6.65 24.71 0.16 -2.70 16 7 C -0.20 -7.70 9.46 21.93 0.21 -7.49 16 8 C 0.14 6.62 5.99 42.61 0.26 6.88 16 9 C 0.09 4.65 5.41 29.10 0.16 4.81 16 10 C -0.53 -31.22 8.94 25.60 0.23 -30.99 16 11 H 0.05 2.86 7.70 -2.91 -0.02 2.84 16 12 C 0.01 0.56 5.46 84.65 0.46 1.03 16 13 N -0.92 -55.42 13.29 21.45 0.28 -55.14 16 14 Si 0.96 45.57 29.54 68.60 2.03 47.60 16 15 H -0.28 -12.77 7.11 99.48 0.71 -12.06 16 16 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 17 H -0.27 -12.52 7.11 99.48 0.71 -11.82 16 18 N -0.48 -23.12 11.74 -51.82 -0.61 -23.73 16 19 S 0.17 6.38 23.20 -56.49 -1.31 5.07 16 20 C -0.10 -2.18 9.61 22.52 0.22 -1.96 16 21 C -0.12 -2.13 9.68 22.24 0.22 -1.92 16 22 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 23 H 0.08 0.54 8.08 -2.39 -0.02 0.53 16 24 H 0.08 0.56 8.08 -2.39 -0.02 0.54 16 25 H 0.15 1.72 8.06 -2.91 -0.02 1.70 16 26 H 0.13 2.71 7.50 -2.91 -0.02 2.69 16 27 H 0.17 5.74 7.24 -2.91 -0.02 5.72 16 28 H 0.02 0.96 8.14 -2.39 -0.02 0.94 16 29 H 0.04 2.02 7.98 -2.38 -0.02 2.00 16 30 H 0.27 15.00 8.31 -92.71 -0.77 14.23 16 31 H 0.13 2.86 7.06 -2.91 -0.02 2.84 16 32 H 0.15 1.83 8.06 -2.91 -0.02 1.80 16 Total: -1.00 -68.84 295.74 4.33 -64.51 By element: Atomic # 1 Polarization: -0.08 SS G_CDS: 1.12 Total: 1.04 kcal Atomic # 6 Polarization: -42.17 SS G_CDS: 2.82 Total: -39.35 kcal Atomic # 7 Polarization: -78.55 SS G_CDS: -0.32 Total: -78.87 kcal Atomic # 14 Polarization: 45.57 SS G_CDS: 2.03 Total: 47.60 kcal Atomic # 16 Polarization: 6.38 SS G_CDS: -1.31 Total: 5.07 kcal Total: -68.84 4.33 -64.51 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259618380.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.512 kcal (2) G-P(sol) polarization free energy of solvation -68.837 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.331 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds