Wall clock time and date at job start Mon Mar 30 2020 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99583 * 2 1 4 4 H 1.48502 * 109.47258 * 239.99981 * 3 2 1 5 5 H 1.48502 * 109.47412 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47061 * 119.99999 * 3 2 1 7 7 C 1.37876 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00077 * 180.27158 * 7 2 1 9 9 C 1.50701 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47194 * 176.60188 * 10 9 7 12 12 S 1.75845 * 125.23427 * 93.29101 * 11 10 9 13 13 C 1.75808 * 91.16239 * 179.97438 * 12 11 10 14 14 C 1.32997 * 109.95629 * 0.34704 * 13 12 11 15 15 C 1.34664 * 125.23399 * 273.59608 * 11 10 9 16 16 C 1.48236 * 122.78744 * 0.02562 * 15 11 10 17 17 C 1.39852 * 120.91051 * 303.65059 * 16 15 11 18 18 C 1.37896 * 119.01761 * 179.77608 * 17 16 15 19 19 N 1.31980 * 120.88500 * 0.51367 * 18 17 16 20 20 C 1.31967 * 122.01254 * 359.73404 * 19 18 17 21 21 C 1.37905 * 120.88915 * 0.02562 * 20 19 18 22 22 H 0.96993 * 120.00512 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47092 * 299.99723 * 9 7 2 24 24 H 1.09004 * 109.47325 * 60.00031 * 9 7 2 25 25 H 1.09003 * 109.46604 * 296.60251 * 10 9 7 26 26 H 1.09006 * 109.46743 * 56.59857 * 10 9 7 27 27 H 1.07998 * 125.01928 * 180.02562 * 13 12 11 28 28 H 1.08004 * 122.54015 * 179.75816 * 14 13 12 29 29 H 1.08001 * 120.49382 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.55958 * 180.25276 * 18 17 16 31 31 H 1.08001 * 119.55825 * 179.97438 * 20 19 18 32 32 H 1.08002 * 120.49300 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0050 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4939 -4.9655 0.0847 12 16 0.9948 -5.9395 -1.2916 13 6 0.2646 -7.1334 -0.2275 14 6 0.4139 -6.7625 1.0410 15 6 1.0962 -5.5607 1.2254 16 6 1.3596 -4.9846 2.5656 17 6 2.6628 -4.6854 2.9755 18 6 2.8626 -4.1461 4.2288 19 7 1.8458 -3.9220 5.0398 20 6 0.6018 -4.1946 4.6940 21 6 0.3122 -4.7312 3.4570 22 1 -0.4850 0.8399 -0.0004 23 1 0.6242 -2.5567 0.8903 24 1 0.6248 -2.5571 -0.8897 25 1 2.8313 -3.6391 -0.9184 26 1 2.9116 -3.5705 0.8585 27 1 -0.2362 -8.0323 -0.5556 28 1 0.0363 -7.3486 1.8659 29 1 3.4999 -4.8701 2.3186 30 1 3.8649 -3.9079 4.5527 31 1 -0.2003 -3.9955 5.3892 32 1 -0.7082 -4.9522 3.1808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259639913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:59 Heat of formation + Delta-G solvation = 50.952912 kcal Electronic energy + Delta-G solvation = -16301.389075 eV Core-core repulsion = 13738.893664 eV Total energy + Delta-G solvation = -2562.495411 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -39.93962 -37.69010 -33.99734 -32.33069 -31.61025 -30.88047 -28.14451 -25.56288 -23.57924 -23.08723 -22.03981 -20.92758 -18.75368 -16.93552 -16.39310 -16.00702 -15.72932 -15.41882 -14.54755 -14.47619 -13.72727 -13.48663 -13.20871 -12.93419 -12.60275 -12.36512 -12.03808 -11.82099 -11.37289 -11.13398 -10.91577 -10.69673 -10.57292 -9.94506 -9.73747 -9.49873 -9.22349 -9.16166 -8.84361 -8.38436 -8.20105 -7.97864 -6.03091 -4.06759 1.15661 1.46190 1.57711 1.89444 2.27914 2.94529 3.31764 3.36281 3.38464 4.14641 4.43096 4.73154 4.86641 5.15095 5.22572 5.32768 5.38140 5.43020 5.46942 5.77674 5.86979 6.02428 6.05150 6.15306 6.37687 6.44462 6.46039 6.65249 6.75214 6.89497 6.98214 7.59992 7.71200 7.94329 8.25810 8.33466 8.98705 9.57444 11.07875 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.007806 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.336718 B = 3586.234388 C = 4908.994040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.892 5.892 2 C 0.060 3.940 3 Si 0.892 3.108 4 H -0.276 1.276 5 H -0.287 1.287 6 H -0.276 1.276 7 C -0.524 4.524 8 H 0.056 0.944 9 C 0.036 3.964 10 C -0.057 4.057 11 C -0.111 4.111 12 S 0.101 5.899 13 C -0.237 4.237 14 C -0.108 4.108 15 C -0.110 4.110 16 C 0.042 3.958 17 C -0.158 4.158 18 C 0.100 3.900 19 N -0.493 5.493 20 C 0.099 3.901 21 C -0.160 4.160 22 H 0.262 0.738 23 H 0.019 0.981 24 H 0.017 0.983 25 H 0.064 0.936 26 H 0.076 0.924 27 H 0.160 0.840 28 H 0.135 0.865 29 H 0.133 0.867 30 H 0.153 0.847 31 H 0.152 0.848 32 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.692 -13.658 3.251 14.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.531 5.531 2 C -0.142 4.142 3 Si 0.719 3.281 4 H -0.202 1.202 5 H -0.212 1.212 6 H -0.202 1.202 7 C -0.562 4.562 8 H 0.074 0.926 9 C -0.002 4.002 10 C -0.096 4.096 11 C -0.229 4.229 12 S 0.367 5.633 13 C -0.372 4.372 14 C -0.139 4.139 15 C -0.121 4.121 16 C 0.032 3.968 17 C -0.178 4.178 18 C -0.057 4.057 19 N -0.203 5.203 20 C -0.058 4.058 21 C -0.180 4.180 22 H 0.071 0.929 23 H 0.037 0.963 24 H 0.035 0.965 25 H 0.082 0.918 26 H 0.094 0.906 27 H 0.178 0.822 28 H 0.153 0.847 29 H 0.151 0.849 30 H 0.170 0.830 31 H 0.170 0.830 32 H 0.150 0.850 Dipole moment (debyes) X Y Z Total from point charges 1.822 -13.091 2.469 13.446 hybrid contribution -0.080 0.460 0.525 0.703 sum 1.742 -12.631 2.994 13.098 Atomic orbital electron populations 1.69952 1.06054 1.26809 1.50269 1.24995 0.94838 0.99212 0.95127 0.86661 0.79634 0.83096 0.78670 1.20175 1.21211 1.20153 1.21125 0.92953 0.90750 1.51365 0.92623 1.19052 0.93463 0.90075 0.97624 1.20633 0.98341 0.88784 1.01879 1.25267 1.02707 1.00808 0.94093 1.84247 1.54312 1.14594 1.10175 1.25254 1.10634 1.04781 0.96498 1.19945 1.00697 0.96396 0.96857 1.17522 1.05656 0.96914 0.92008 1.18660 0.93019 0.93809 0.91330 1.22158 0.97032 1.00901 0.97691 1.22566 0.98064 0.94735 0.90296 1.67612 1.00048 1.16501 1.36099 1.22563 0.93876 0.94678 0.94654 1.22148 0.99767 1.01196 0.94867 0.92867 0.96294 0.96451 0.91785 0.90555 0.82227 0.84718 0.84911 0.82985 0.83036 0.85013 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.29 55.43 0.74 -26.14 16 2 C 0.06 1.72 5.46 -17.82 -0.10 1.63 16 3 Si 0.89 21.72 29.54 -169.99 -5.02 16.70 16 4 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 5 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 6 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.52 -14.71 9.11 -34.44 -0.31 -15.02 16 8 H 0.06 1.50 7.74 -52.49 -0.41 1.10 16 9 C 0.04 0.92 4.96 -27.88 -0.14 0.78 16 10 C -0.06 -1.17 5.27 -27.88 -0.15 -1.32 16 11 C -0.11 -1.99 5.77 -35.57 -0.21 -2.19 16 12 S 0.10 1.55 23.31 -107.50 -2.51 -0.96 16 13 C -0.24 -3.14 11.18 28.91 0.32 -2.82 16 14 C -0.11 -1.53 9.94 -40.96 -0.41 -1.94 16 15 C -0.11 -1.83 5.34 -106.61 -0.57 -2.40 16 16 C 0.04 0.71 5.23 -104.58 -0.55 0.16 16 17 C -0.16 -2.48 8.31 -39.10 -0.32 -2.81 16 18 C 0.10 1.53 11.17 -17.61 -0.20 1.33 16 19 N -0.49 -8.17 10.35 -13.36 -0.14 -8.31 16 20 C 0.10 1.51 11.17 -17.62 -0.20 1.32 16 21 C -0.16 -2.50 9.82 -39.10 -0.38 -2.89 16 22 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 23 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 24 H 0.02 0.48 8.14 -51.93 -0.42 0.05 16 25 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 26 H 0.08 1.52 5.70 -51.93 -0.30 1.22 16 27 H 0.16 1.63 8.06 -52.49 -0.42 1.21 16 28 H 0.14 1.60 8.06 -52.48 -0.42 1.18 16 29 H 0.13 1.88 7.40 -52.49 -0.39 1.49 16 30 H 0.15 1.88 8.06 -52.49 -0.42 1.46 16 31 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 32 H 0.13 1.84 8.06 -52.49 -0.42 1.42 16 LS Contribution 294.40 15.07 4.44 4.44 Total: -1.00 -31.41 294.40 -9.30 -40.72 By element: Atomic # 1 Polarization: 3.33 SS G_CDS: -3.61 Total: -0.28 kcal Atomic # 6 Polarization: -22.97 SS G_CDS: -3.20 Total: -26.17 kcal Atomic # 7 Polarization: -35.05 SS G_CDS: 0.60 Total: -34.45 kcal Atomic # 14 Polarization: 21.72 SS G_CDS: -5.02 Total: 16.70 kcal Atomic # 16 Polarization: 1.55 SS G_CDS: -2.51 Total: -0.96 kcal Total LS contribution 4.44 Total: 4.44 kcal Total: -31.41 -9.30 -40.72 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 91.672 kcal (2) G-P(sol) polarization free energy of solvation -31.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 60.257 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.304 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.719 kcal (6) G-S(sol) free energy of system = (1) + (5) 50.953 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds