Wall clock time and date at job start Mon Mar 30 2020 07:06:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86802 * 119.99583 * 2 1 4 4 H 1.48502 * 109.47258 * 239.99981 * 3 2 1 5 5 H 1.48502 * 109.47412 * 359.97438 * 3 2 1 6 6 H 1.48505 * 109.47061 * 119.99999 * 3 2 1 7 7 C 1.37876 * 120.00452 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00077 * 180.27158 * 7 2 1 9 9 C 1.50701 * 119.99662 * 0.02562 * 7 2 1 10 10 C 1.53004 * 109.47058 * 179.97438 * 9 7 2 11 11 C 1.50699 * 109.47194 * 176.60188 * 10 9 7 12 12 S 1.75845 * 125.23427 * 93.29101 * 11 10 9 13 13 C 1.75808 * 91.16239 * 179.97438 * 12 11 10 14 14 C 1.32997 * 109.95629 * 0.34704 * 13 12 11 15 15 C 1.34664 * 125.23399 * 273.59608 * 11 10 9 16 16 C 1.48236 * 122.78744 * 0.02562 * 15 11 10 17 17 C 1.39852 * 120.91051 * 303.65059 * 16 15 11 18 18 C 1.37896 * 119.01761 * 179.77608 * 17 16 15 19 19 N 1.31980 * 120.88500 * 0.51367 * 18 17 16 20 20 C 1.31967 * 122.01254 * 359.73404 * 19 18 17 21 21 C 1.37905 * 120.88915 * 0.02562 * 20 19 18 22 22 H 0.96993 * 120.00512 * 0.02562 * 1 2 3 23 23 H 1.08998 * 109.47092 * 299.99723 * 9 7 2 24 24 H 1.09004 * 109.47325 * 60.00031 * 9 7 2 25 25 H 1.09003 * 109.46604 * 296.60251 * 10 9 7 26 26 H 1.09006 * 109.46743 * 56.59857 * 10 9 7 27 27 H 1.07998 * 125.01928 * 180.02562 * 13 12 11 28 28 H 1.08004 * 122.54015 * 179.75816 * 14 13 12 29 29 H 1.08001 * 120.49382 * 0.02562 * 17 16 15 30 30 H 1.08000 * 119.55958 * 180.25276 * 18 17 16 31 31 H 1.08001 * 119.55825 * 179.97438 * 20 19 18 32 32 H 1.08002 * 120.49300 * 179.97438 * 21 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6966 -1.2125 5 1 1.2840 2.7465 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1939 0.0050 9 6 1.2512 -2.4991 0.0005 10 6 2.2455 -3.6620 0.0005 11 6 1.4939 -4.9655 0.0847 12 16 0.9948 -5.9395 -1.2916 13 6 0.2646 -7.1334 -0.2275 14 6 0.4139 -6.7625 1.0410 15 6 1.0962 -5.5607 1.2254 16 6 1.3596 -4.9846 2.5656 17 6 2.6628 -4.6854 2.9755 18 6 2.8626 -4.1461 4.2288 19 7 1.8458 -3.9220 5.0398 20 6 0.6018 -4.1946 4.6940 21 6 0.3122 -4.7312 3.4570 22 1 -0.4850 0.8399 -0.0004 23 1 0.6242 -2.5567 0.8903 24 1 0.6248 -2.5571 -0.8897 25 1 2.8313 -3.6391 -0.9184 26 1 2.9116 -3.5705 0.8585 27 1 -0.2362 -8.0323 -0.5556 28 1 0.0363 -7.3486 1.8659 29 1 3.4999 -4.8701 2.3186 30 1 3.8649 -3.9079 4.5527 31 1 -0.2003 -3.9955 5.3892 32 1 -0.7082 -4.9522 3.1808 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259639913.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:06:59 Heat of formation + Delta-G solvation = 33.927612 kcal Electronic energy + Delta-G solvation = -16302.127347 eV Core-core repulsion = 13738.893664 eV Total energy + Delta-G solvation = -2563.233683 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -41.14720 -38.92377 -35.89560 -33.86053 -33.17791 -32.09819 -29.74582 -27.19372 -25.16611 -24.28543 -23.29322 -22.65847 -19.96570 -18.71558 -17.87074 -17.40814 -16.97964 -16.62707 -16.54105 -15.63173 -15.18238 -14.75269 -14.64482 -14.46959 -14.06126 -13.80060 -13.56964 -13.31339 -12.96532 -12.79034 -12.55714 -12.47601 -11.87393 -11.73245 -11.63135 -11.30992 -10.72413 -10.58076 -10.42174 -10.03765 -9.44998 -9.23501 -8.22335 -6.34334 -0.10176 0.26792 0.37686 0.68755 1.10340 1.37733 1.40649 1.48233 1.75660 2.38409 2.93583 3.10853 3.60463 3.69315 3.93812 4.03714 4.20119 4.24716 4.32317 4.47227 4.66060 4.69296 4.73321 4.90246 4.96094 5.04947 5.14557 5.23891 5.42849 5.47799 5.49371 5.66869 5.78377 5.80510 6.17229 6.80930 7.05594 7.34962 8.88935 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.014848 B = 0.007806 C = 0.005702 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1885.336718 B = 3586.234388 C = 4908.994040 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.930 5.930 2 C 0.003 3.997 3 Si 0.961 3.039 4 H -0.264 1.264 5 H -0.283 1.283 6 H -0.268 1.268 7 C -0.543 4.543 8 H 0.063 0.937 9 C 0.048 3.952 10 C -0.041 4.041 11 C -0.157 4.157 12 S 0.102 5.898 13 C -0.210 4.210 14 C -0.123 4.123 15 C -0.099 4.099 16 C 0.021 3.979 17 C -0.167 4.167 18 C 0.093 3.907 19 N -0.513 5.513 20 C 0.092 3.908 21 C -0.170 4.170 22 H 0.263 0.737 23 H -0.014 1.014 24 H -0.012 1.012 25 H 0.066 0.934 26 H 0.078 0.922 27 H 0.199 0.801 28 H 0.161 0.839 29 H 0.143 0.857 30 H 0.179 0.821 31 H 0.179 0.821 32 H 0.145 0.855 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.140 -14.546 3.482 15.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.195 4.195 3 Si 0.786 3.214 4 H -0.189 1.189 5 H -0.208 1.208 6 H -0.193 1.193 7 C -0.581 4.581 8 H 0.081 0.919 9 C 0.010 3.990 10 C -0.080 4.080 11 C -0.275 4.275 12 S 0.368 5.632 13 C -0.344 4.344 14 C -0.152 4.152 15 C -0.112 4.112 16 C 0.010 3.990 17 C -0.187 4.187 18 C -0.063 4.063 19 N -0.223 5.223 20 C -0.064 4.064 21 C -0.190 4.190 22 H 0.072 0.928 23 H 0.004 0.996 24 H 0.006 0.994 25 H 0.085 0.915 26 H 0.096 0.904 27 H 0.216 0.784 28 H 0.179 0.821 29 H 0.161 0.839 30 H 0.196 0.804 31 H 0.196 0.804 32 H 0.163 0.837 Dipole moment (debyes) X Y Z Total from point charges 2.287 -13.989 2.692 14.428 hybrid contribution -0.275 0.650 0.466 0.846 sum 2.011 -13.339 3.158 13.855 Atomic orbital electron populations 1.70093 1.07800 1.27814 1.51322 1.25943 0.95718 1.03241 0.94605 0.85558 0.78382 0.78237 0.79267 1.18863 1.20833 1.19289 1.21596 0.93567 0.92001 1.50949 0.91903 1.18803 0.93687 0.92028 0.94473 1.20231 0.97174 0.88522 1.02078 1.24983 1.05418 1.01117 0.95944 1.84186 1.54468 1.14866 1.09727 1.25723 1.08479 1.04733 0.95507 1.20167 1.01021 0.95885 0.98165 1.17812 1.04404 0.97375 0.91560 1.18947 0.93818 0.94488 0.91741 1.22351 0.97206 1.00991 0.98163 1.23028 0.99089 0.94118 0.90101 1.67672 1.00723 1.17169 1.36732 1.23033 0.94311 0.93990 0.95078 1.22369 1.00280 1.01322 0.94997 0.92785 0.99569 0.99402 0.91539 0.90412 0.78435 0.82125 0.83895 0.80432 0.80423 0.83745 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.29 13.29 21.45 0.28 -57.01 16 2 C 0.00 0.18 5.46 84.65 0.46 0.64 16 3 Si 0.96 44.63 29.54 68.60 2.03 46.66 16 4 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 5 H -0.28 -12.87 7.11 99.48 0.71 -12.17 16 6 H -0.27 -12.02 7.11 99.48 0.71 -11.31 16 7 C -0.54 -31.05 9.11 25.60 0.23 -30.82 16 8 H 0.06 3.41 7.74 -2.92 -0.02 3.39 16 9 C 0.05 2.56 4.96 29.85 0.15 2.71 16 10 C -0.04 -1.72 5.27 29.85 0.16 -1.56 16 11 C -0.16 -5.64 5.77 24.87 0.14 -5.50 16 12 S 0.10 3.01 23.31 -56.49 -1.32 1.70 16 13 C -0.21 -4.93 11.18 66.65 0.75 -4.19 16 14 C -0.12 -3.19 9.94 21.39 0.21 -2.98 16 15 C -0.10 -3.24 5.34 -21.15 -0.11 -3.35 16 16 C 0.02 0.68 5.23 -19.84 -0.10 0.57 16 17 C -0.17 -5.20 8.31 22.58 0.19 -5.01 16 18 C 0.09 2.78 11.17 84.59 0.94 3.72 16 19 N -0.51 -16.64 10.35 -196.18 -2.03 -18.67 16 20 C 0.09 2.75 11.17 84.59 0.94 3.69 16 21 C -0.17 -5.24 9.82 22.58 0.22 -5.02 16 22 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 23 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 24 H -0.01 -0.73 8.14 -2.38 -0.02 -0.75 16 25 H 0.07 2.66 8.14 -2.39 -0.02 2.65 16 26 H 0.08 3.15 5.70 -2.38 -0.01 3.13 16 27 H 0.20 3.11 8.06 -2.91 -0.02 3.09 16 28 H 0.16 3.31 8.06 -2.91 -0.02 3.29 16 29 H 0.14 4.01 7.40 -2.91 -0.02 3.99 16 30 H 0.18 4.17 8.06 -2.91 -0.02 4.14 16 31 H 0.18 4.13 8.06 -2.91 -0.02 4.10 16 32 H 0.14 3.94 8.06 -2.91 -0.02 3.92 16 Total: -1.00 -68.50 294.40 4.27 -64.24 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: 1.12 Total: 10.17 kcal Atomic # 6 Polarization: -51.27 SS G_CDS: 4.18 Total: -47.08 kcal Atomic # 7 Polarization: -73.93 SS G_CDS: -1.75 Total: -75.68 kcal Atomic # 14 Polarization: 44.63 SS G_CDS: 2.03 Total: 46.66 kcal Atomic # 16 Polarization: 3.01 SS G_CDS: -1.32 Total: 1.70 kcal Total: -68.50 4.27 -64.24 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259639913.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 98.166 kcal (2) G-P(sol) polarization free energy of solvation -68.504 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.662 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.265 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.239 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds