Wall clock time and date at job start Mon Mar 30 2020 07:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38085 * 125.98618 * 2 1 4 4 C 1.40265 * 126.28584 * 359.97438 * 3 2 1 5 5 H 1.07998 * 119.99841 * 359.97438 * 4 3 2 6 6 C 1.39953 * 119.99927 * 179.97438 * 4 3 2 7 7 N 1.30912 * 120.00325 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99993 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46923 * 60.00325 * 8 6 4 10 10 H 1.48498 * 109.47047 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47217 * 300.00539 * 8 6 4 12 12 N 1.39114 * 107.43043 * 180.02562 * 3 2 1 13 13 H 0.97001 * 126.17631 * 179.97438 * 12 3 2 14 14 C 1.37990 * 107.64414 * 0.26505 * 12 3 2 15 15 N 1.31611 * 143.59195 * 179.71091 * 14 12 3 16 16 C 1.34287 * 109.36913 * 180.02562 * 15 14 12 17 17 C 1.50699 * 125.78784 * 180.02562 * 16 15 14 18 18 F 1.39902 * 109.47007 * 4.97165 * 17 16 15 19 19 F 1.39893 * 109.47196 * 124.97665 * 17 16 15 20 20 F 1.39900 * 109.47128 * 244.97804 * 17 16 15 21 21 C 1.34517 * 108.43118 * 359.57157 * 16 15 14 22 22 N 1.36369 * 108.18883 * 359.57122 * 14 12 3 23 23 H 1.08993 * 109.46994 * 89.97594 * 1 2 3 24 24 H 1.09001 * 109.47134 * 209.97784 * 1 2 3 25 25 H 1.08995 * 109.47025 * 329.97600 * 1 2 3 26 26 H 0.97000 * 120.00530 * 179.97438 * 7 6 4 27 27 H 1.07996 * 126.54272 * 179.86873 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3184 1.1173 0.0000 4 6 1.8913 2.4534 -0.0005 5 1 0.8360 2.6829 -0.0014 6 6 2.8327 3.4890 0.0001 7 7 4.1119 3.2108 0.0006 8 14 2.2639 5.2683 -0.0013 9 1 1.4451 5.5271 1.2102 10 1 3.4468 6.1661 -0.0010 11 1 1.4477 5.5261 -1.2147 12 7 3.6372 0.6746 -0.0006 13 1 4.4292 1.2347 -0.0011 14 6 3.6153 -0.7051 -0.0070 15 7 4.3795 -1.7766 -0.0151 16 6 3.6067 -2.8748 -0.0178 17 6 4.0992 -4.2990 -0.0261 18 9 5.4939 -4.3107 0.0836 19 9 3.5406 -4.9919 1.0531 20 9 3.7206 -4.9164 -1.2231 21 6 2.3183 -2.4883 -0.0018 22 7 2.3131 -1.1101 -0.0007 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.7645 3.9285 0.0007 27 1 1.4531 -3.1345 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259675350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:25 Heat of formation + Delta-G solvation = -62.895621 kcal Electronic energy + Delta-G solvation = -19015.220102 eV Core-core repulsion = 15359.637894 eV Total energy + Delta-G solvation = -3655.582208 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.063 amu Computer time = 0.28 seconds Orbital eigenvalues (eV) -49.56470 -47.12261 -47.03336 -42.06654 -37.39422 -33.94247 -32.41480 -30.25579 -28.74359 -27.46793 -25.57025 -23.64391 -20.79486 -20.53586 -19.24761 -17.99957 -17.97195 -17.68994 -16.55994 -15.65605 -15.34544 -15.15333 -14.71772 -13.99224 -13.87034 -13.53522 -13.45187 -13.24741 -13.23579 -13.01764 -12.38982 -12.24359 -11.88995 -11.75517 -11.70437 -11.20171 -11.06914 -11.02526 -10.59407 -9.98213 -9.70870 -9.28488 -7.74446 -7.43101 -6.67731 -4.90227 2.48675 2.81143 2.83598 2.84802 3.12317 3.41898 3.53851 3.59212 3.72371 3.99162 4.70239 4.74197 4.74887 5.06488 5.60368 5.97003 6.07367 6.18369 6.42020 6.57633 6.66083 6.73242 6.85985 7.32941 7.48216 7.54801 7.97039 8.17240 8.50826 8.73247 9.16609 9.63387 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.042583 B = 0.005376 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.380336 B = 5206.859243 C = 5684.425596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.025 4.025 2 C -0.249 4.249 3 C 0.307 3.693 4 C -0.432 4.432 5 H 0.109 0.891 6 C 0.073 3.927 7 N -0.823 5.823 8 Si 0.942 3.058 9 H -0.259 1.259 10 H -0.275 1.275 11 H -0.259 1.259 12 N -0.572 5.572 13 H 0.442 0.558 14 C 0.362 3.638 15 N -0.498 5.498 16 C -0.080 4.080 17 C 0.562 3.438 18 F -0.173 7.173 19 F -0.181 7.181 20 F -0.182 7.182 21 C -0.055 4.055 22 N -0.340 5.340 23 H 0.039 0.961 24 H 0.039 0.961 25 H 0.064 0.936 26 H 0.298 0.702 27 H 0.167 0.833 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.997 -2.720 0.055 4.048 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.083 4.083 2 C -0.352 4.352 3 C 0.197 3.803 4 C -0.465 4.465 5 H 0.127 0.873 6 C -0.145 4.145 7 N -0.452 5.452 8 Si 0.765 3.235 9 H -0.184 1.184 10 H -0.199 1.199 11 H -0.184 1.184 12 N -0.204 5.204 13 H 0.294 0.706 14 C 0.013 3.987 15 N -0.226 5.226 16 C -0.214 4.214 17 C 0.506 3.494 18 F -0.154 7.154 19 F -0.163 7.163 20 F -0.163 7.163 21 C -0.195 4.195 22 N -0.012 5.012 23 H 0.057 0.943 24 H 0.058 0.942 25 H 0.082 0.918 26 H 0.110 0.890 27 H 0.185 0.815 Dipole moment (debyes) X Y Z Total from point charges -1.989 -2.598 0.058 3.272 hybrid contribution -0.452 0.639 -0.006 0.783 sum -2.442 -1.958 0.052 3.130 Atomic orbital electron populations 1.19504 0.88505 1.00612 0.99710 1.19645 0.92776 0.80763 1.42052 1.17618 0.78900 0.92464 0.91290 1.18903 0.95839 0.86853 1.44942 0.87309 1.26149 0.93984 1.03681 0.90689 1.68791 1.02279 1.37171 1.36943 0.85765 0.79230 0.78084 0.80405 1.18356 1.19925 1.18356 1.42498 1.10007 0.98893 1.68984 0.70606 1.20460 0.81560 0.87556 1.09151 1.69768 1.30067 0.93320 1.29422 1.19485 0.90877 0.91626 1.19368 1.16937 0.74762 0.84652 0.73033 1.93162 1.29626 1.96912 1.95711 1.93162 1.85445 1.81419 1.56266 1.93169 1.91271 1.84736 1.47148 1.21020 0.97739 0.81452 1.19302 1.42847 1.08977 1.04375 1.44993 0.94264 0.94241 0.91756 0.88960 0.81522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.03 -0.47 10.17 36.01 0.37 -0.10 15 2 C -0.25 -5.76 7.30 -80.25 -0.59 -6.34 15 3 C 0.31 7.41 6.69 -83.85 -0.56 6.84 15 4 C -0.43 -9.69 9.03 -38.18 -0.34 -10.04 15 5 H 0.11 2.23 7.20 -52.49 -0.38 1.85 15 6 C 0.07 1.53 5.50 -17.30 -0.10 1.44 15 7 N -0.82 -18.03 10.70 55.55 0.59 -17.43 15 8 Si 0.94 15.86 29.56 -169.99 -5.03 10.83 15 9 H -0.26 -4.32 7.11 56.52 0.40 -3.92 15 10 H -0.27 -4.58 7.11 56.52 0.40 -4.18 15 11 H -0.26 -4.33 7.11 56.52 0.40 -3.92 15 12 N -0.57 -14.12 5.92 -11.10 -0.07 -14.18 15 13 H 0.44 10.71 6.34 -40.82 -0.26 10.45 15 14 C 0.36 9.14 9.59 -319.35 -3.06 6.08 15 15 N -0.50 -12.34 11.09 -10.09 -0.11 -12.45 15 16 C -0.08 -1.76 6.36 -82.83 -0.53 -2.28 15 17 C 0.56 10.61 3.48 36.01 0.13 10.74 15 18 F -0.17 -3.35 17.15 2.25 0.04 -3.32 15 19 F -0.18 -3.17 17.28 2.25 0.04 -3.13 15 20 F -0.18 -3.22 17.30 2.25 0.04 -3.18 15 21 C -0.05 -1.18 11.92 -16.18 -0.19 -1.37 15 22 N -0.34 -8.11 3.45 -58.62 -0.20 -8.31 15 23 H 0.04 0.68 8.14 -51.93 -0.42 0.26 15 24 H 0.04 0.67 8.14 -51.93 -0.42 0.25 15 25 H 0.06 1.11 7.45 -51.93 -0.39 0.72 15 26 H 0.30 5.92 8.30 -40.82 -0.34 5.58 15 27 H 0.17 2.95 8.06 -52.49 -0.42 2.53 15 LS Contribution 257.44 15.07 3.88 3.88 Total: -1.00 -25.58 257.44 -7.12 -32.70 By element: Atomic # 1 Polarization: 11.05 SS G_CDS: -1.43 Total: 9.62 kcal Atomic # 6 Polarization: 9.84 SS G_CDS: -4.88 Total: 4.96 kcal Atomic # 7 Polarization: -52.59 SS G_CDS: 0.21 Total: -52.38 kcal Atomic # 9 Polarization: -9.74 SS G_CDS: 0.12 Total: -9.62 kcal Atomic # 14 Polarization: 15.86 SS G_CDS: -5.03 Total: 10.83 kcal Total LS contribution 3.88 Total: 3.88 kcal Total: -25.58 -7.12 -32.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259675350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.194 kcal (2) G-P(sol) polarization free energy of solvation -25.582 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.776 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.120 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -32.702 kcal (6) G-S(sol) free energy of system = (1) + (5) -62.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.28 seconds