Wall clock time and date at job start Mon Mar 30 2020 07:01:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.38085 * 125.98618 * 2 1 4 4 C 1.40265 * 126.28584 * 359.97438 * 3 2 1 5 5 H 1.07998 * 119.99841 * 359.97438 * 4 3 2 6 6 C 1.39953 * 119.99927 * 179.97438 * 4 3 2 7 7 N 1.30912 * 120.00325 * 0.02562 * 6 4 3 8 8 Si 1.86805 * 119.99993 * 179.97438 * 6 4 3 9 9 H 1.48499 * 109.46923 * 60.00325 * 8 6 4 10 10 H 1.48498 * 109.47047 * 180.02562 * 8 6 4 11 11 H 1.48498 * 109.47217 * 300.00539 * 8 6 4 12 12 N 1.39114 * 107.43043 * 180.02562 * 3 2 1 13 13 H 0.97001 * 126.17631 * 179.97438 * 12 3 2 14 14 C 1.37990 * 107.64414 * 0.26505 * 12 3 2 15 15 N 1.31611 * 143.59195 * 179.71091 * 14 12 3 16 16 C 1.34287 * 109.36913 * 180.02562 * 15 14 12 17 17 C 1.50699 * 125.78784 * 180.02562 * 16 15 14 18 18 F 1.39902 * 109.47007 * 4.97165 * 17 16 15 19 19 F 1.39893 * 109.47196 * 124.97665 * 17 16 15 20 20 F 1.39900 * 109.47128 * 244.97804 * 17 16 15 21 21 C 1.34517 * 108.43118 * 359.57157 * 16 15 14 22 22 N 1.36369 * 108.18883 * 359.57122 * 14 12 3 23 23 H 1.08993 * 109.46994 * 89.97594 * 1 2 3 24 24 H 1.09001 * 109.47134 * 209.97784 * 1 2 3 25 25 H 1.08995 * 109.47025 * 329.97600 * 1 2 3 26 26 H 0.97000 * 120.00530 * 179.97438 * 7 6 4 27 27 H 1.07996 * 126.54272 * 179.86873 * 21 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3184 1.1173 0.0000 4 6 1.8913 2.4534 -0.0005 5 1 0.8360 2.6829 -0.0014 6 6 2.8327 3.4890 0.0001 7 7 4.1119 3.2108 0.0006 8 14 2.2639 5.2683 -0.0013 9 1 1.4451 5.5271 1.2102 10 1 3.4468 6.1661 -0.0010 11 1 1.4477 5.5261 -1.2147 12 7 3.6372 0.6746 -0.0006 13 1 4.4292 1.2347 -0.0011 14 6 3.6153 -0.7051 -0.0070 15 7 4.3795 -1.7766 -0.0151 16 6 3.6067 -2.8748 -0.0178 17 6 4.0992 -4.2990 -0.0261 18 9 5.4939 -4.3107 0.0836 19 9 3.5406 -4.9919 1.0531 20 9 3.7206 -4.9164 -1.2231 21 6 2.3183 -2.4883 -0.0018 22 7 2.3131 -1.1101 -0.0007 23 1 -0.3633 0.0004 -1.0276 24 1 -0.3633 -0.8902 0.5135 25 1 -0.3633 0.8897 0.5142 26 1 4.7645 3.9285 0.0007 27 1 1.4531 -3.1345 -0.0014 RHF calculation, no. of doubly occupied orbitals= 46 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259675350.mol2 27 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:01:25 Heat of formation + Delta-G solvation = -73.565982 kcal Electronic energy + Delta-G solvation = -19015.682804 eV Core-core repulsion = 15359.637894 eV Total energy + Delta-G solvation = -3656.044910 eV No. of doubly occupied orbitals = 46 Molecular weight (most abundant/longest-lived isotopes) = 259.063 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -51.06101 -48.58099 -48.55243 -43.82321 -39.13380 -35.60414 -34.15563 -31.92438 -30.43734 -29.11073 -27.19382 -25.29183 -22.50407 -22.28294 -20.93922 -19.66654 -19.45968 -19.22307 -18.20286 -17.37908 -16.93188 -16.90800 -16.41846 -15.45736 -15.37310 -15.01110 -14.97829 -14.74024 -14.72717 -14.64287 -13.91000 -13.83045 -13.40770 -13.29487 -13.26418 -12.77957 -12.62263 -12.58551 -11.98903 -11.75257 -11.26347 -11.08573 -9.49840 -9.02753 -8.44968 -6.61073 0.85316 1.36527 1.43157 1.54730 1.58203 1.77719 1.84356 1.96460 2.13529 2.37332 3.04048 3.07183 3.17452 3.54212 3.93282 4.38297 4.49167 4.53785 4.95626 5.03270 5.08901 5.11844 5.24121 5.61151 5.78073 5.84478 6.26671 6.47218 6.76365 6.99604 7.34861 8.05332 Molecular weight = 259.06amu Principal moments of inertia in cm(-1) A = 0.042583 B = 0.005376 C = 0.004925 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 657.380336 B = 5206.859243 C = 5684.425596 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 C -0.267 4.267 3 C 0.277 3.723 4 C -0.451 4.451 5 H 0.125 0.875 6 C 0.035 3.965 7 N -0.848 5.848 8 Si 1.014 2.986 9 H -0.253 1.253 10 H -0.272 1.272 11 H -0.253 1.253 12 N -0.581 5.581 13 H 0.438 0.562 14 C 0.328 3.672 15 N -0.525 5.525 16 C -0.094 4.094 17 C 0.574 3.426 18 F -0.177 7.177 19 F -0.169 7.169 20 F -0.172 7.172 21 C -0.052 4.052 22 N -0.346 5.346 23 H 0.049 0.951 24 H 0.053 0.947 25 H 0.076 0.924 26 H 0.306 0.694 27 H 0.204 0.796 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.443 -2.301 0.072 5.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.078 4.078 2 C -0.370 4.370 3 C 0.168 3.832 4 C -0.483 4.483 5 H 0.143 0.857 6 C -0.180 4.180 7 N -0.476 5.476 8 Si 0.833 3.167 9 H -0.177 1.177 10 H -0.197 1.197 11 H -0.177 1.177 12 N -0.213 5.213 13 H 0.289 0.711 14 C -0.021 4.021 15 N -0.254 5.254 16 C -0.227 4.227 17 C 0.518 3.482 18 F -0.158 7.158 19 F -0.151 7.151 20 F -0.153 7.153 21 C -0.191 4.191 22 N -0.018 5.018 23 H 0.068 0.932 24 H 0.072 0.928 25 H 0.094 0.906 26 H 0.118 0.882 27 H 0.221 0.779 Dipole moment (debyes) X Y Z Total from point charges -3.442 -2.215 0.075 4.094 hybrid contribution 0.036 0.473 -0.013 0.475 sum -3.406 -1.742 0.063 3.826 Atomic orbital electron populations 1.19579 0.85605 1.01882 1.00748 1.20373 0.94596 0.80316 1.41743 1.18210 0.78885 0.93780 0.92318 1.19332 0.97037 0.86732 1.45203 0.85704 1.27115 0.93709 1.07636 0.89506 1.68827 1.03428 1.38690 1.36698 0.84703 0.78753 0.72581 0.80619 1.17674 1.19687 1.17735 1.42591 1.10311 0.98897 1.69540 0.71115 1.20764 0.82636 0.87913 1.10753 1.69712 1.31200 0.94118 1.30338 1.20022 0.91214 0.92403 1.19059 1.16558 0.74534 0.83499 0.73601 1.93157 1.29984 1.96869 1.95775 1.93185 1.85227 1.80918 1.55751 1.93189 1.91151 1.84334 1.46637 1.21694 0.98809 0.80953 1.17693 1.43112 1.08580 1.05289 1.44866 0.93194 0.92828 0.90559 0.88191 0.77873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.02 -0.71 10.17 71.24 0.72 0.01 15 2 C -0.27 -12.21 7.30 41.69 0.30 -11.91 15 3 C 0.28 13.46 6.69 38.44 0.26 13.72 15 4 C -0.45 -20.00 9.03 23.18 0.21 -19.79 15 5 H 0.13 4.94 7.20 -2.91 -0.02 4.92 15 6 C 0.04 1.46 5.50 85.25 0.47 1.93 15 7 N -0.85 -37.31 10.70 21.84 0.23 -37.08 15 8 Si 1.01 31.13 29.56 68.60 2.03 33.16 15 9 H -0.25 -7.47 7.11 99.48 0.71 -6.76 15 10 H -0.27 -8.18 7.11 99.48 0.71 -7.47 15 11 H -0.25 -7.51 7.11 99.48 0.71 -6.81 15 12 N -0.58 -29.46 5.92 -189.05 -1.12 -30.58 15 13 H 0.44 22.02 6.34 -92.71 -0.59 21.43 15 14 C 0.33 16.87 9.59 260.28 2.50 19.37 15 15 N -0.52 -26.32 11.09 -185.82 -2.06 -28.38 15 16 C -0.09 -4.07 6.36 41.33 0.26 -3.81 15 17 C 0.57 20.90 3.48 71.24 0.25 21.14 15 18 F -0.18 -6.71 17.15 44.97 0.77 -5.94 15 19 F -0.17 -5.58 17.28 44.97 0.78 -4.81 15 20 F -0.17 -5.77 17.30 44.97 0.78 -4.99 15 21 C -0.05 -2.17 11.92 82.90 0.99 -1.18 15 22 N -0.35 -16.40 3.45 -339.38 -1.17 -17.57 15 23 H 0.05 1.64 8.14 -2.39 -0.02 1.62 15 24 H 0.05 1.71 8.14 -2.39 -0.02 1.69 15 25 H 0.08 2.47 7.45 -2.39 -0.02 2.45 15 26 H 0.31 12.12 8.30 -92.71 -0.77 11.35 15 27 H 0.20 6.62 8.06 -2.91 -0.02 6.60 15 Total: -1.00 -54.56 257.44 6.86 -47.70 By element: Atomic # 1 Polarization: 28.34 SS G_CDS: 0.66 Total: 29.01 kcal Atomic # 6 Polarization: 13.53 SS G_CDS: 5.96 Total: 19.49 kcal Atomic # 7 Polarization: -109.49 SS G_CDS: -4.12 Total: -113.61 kcal Atomic # 9 Polarization: -18.06 SS G_CDS: 2.33 Total: -15.74 kcal Atomic # 14 Polarization: 31.13 SS G_CDS: 2.03 Total: 33.16 kcal Total: -54.56 6.86 -47.70 kcal The number of atoms in the molecule is 27 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259675350.mol2 27 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.869 kcal (2) G-P(sol) polarization free energy of solvation -54.558 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -80.427 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 6.861 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.697 kcal (6) G-S(sol) free energy of system = (1) + (5) -73.566 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds