Wall clock time and date at job start Mon Mar 30 2020 07:07:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38451 * 119.90936 * 2 1 4 4 C 1.38435 * 120.36127 * 179.97438 * 3 2 1 5 5 C 1.50705 * 119.91265 * 180.02562 * 4 3 2 6 6 C 1.37855 * 120.18290 * 0.02562 * 4 3 2 7 7 C 1.39946 * 119.81243 * 0.02562 * 6 4 3 8 8 C 1.47189 * 120.17566 * 179.97438 * 7 6 4 9 9 S 1.72013 * 127.40583 * 351.88714 * 8 7 6 10 10 N 1.69403 * 96.23400 * 180.02562 * 9 8 7 11 11 C 1.29267 * 108.41187 * 359.97438 * 10 9 8 12 12 C 1.39809 * 117.06985 * 0.02562 * 11 10 9 13 13 C 1.40825 * 123.45003 * 179.72944 * 12 11 10 14 14 H 1.08000 * 119.99963 * 135.92083 * 13 12 11 15 15 C 1.39884 * 119.99955 * 315.91369 * 13 12 11 16 16 N 1.30939 * 120.00154 * 351.86438 * 15 13 12 17 17 Si 1.86795 * 119.99936 * 171.86029 * 15 13 12 18 18 H 1.48503 * 109.47235 * 90.00308 * 17 15 13 19 19 H 1.48502 * 109.47359 * 210.00476 * 17 15 13 20 20 H 1.48501 * 109.47250 * 330.00300 * 17 15 13 21 21 C 1.37846 * 119.91317 * 180.29758 * 2 1 3 22 22 H 1.09007 * 109.46876 * 90.00466 * 1 2 3 23 23 H 1.08998 * 109.47100 * 209.99925 * 1 2 3 24 24 H 1.08993 * 109.47747 * 330.00402 * 1 2 3 25 25 H 1.08004 * 119.81875 * 0.02562 * 3 2 1 26 26 H 1.09001 * 109.46911 * 269.97572 * 5 4 3 27 27 H 1.08995 * 109.46867 * 29.97619 * 5 4 3 28 28 H 1.08998 * 109.47429 * 149.97666 * 5 4 3 29 29 H 1.07992 * 120.09555 * 179.97438 * 6 4 3 30 30 H 1.08007 * 121.46082 * 180.02562 * 11 10 9 31 31 H 0.96999 * 119.99994 * 179.97438 * 16 15 13 32 32 H 1.08002 * 120.09577 * 0.02562 * 21 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1973 1.2001 0.0000 4 6 3.5816 1.2110 0.0005 5 6 4.3228 2.5232 0.0011 6 6 4.2841 0.0249 0.0005 7 6 3.5938 -1.1925 -0.0005 8 6 4.3358 -2.4637 -0.0011 9 16 6.0309 -2.6841 -0.1934 10 7 6.0117 -4.3736 -0.0716 11 6 4.7898 -4.7563 0.1059 12 6 3.8115 -3.7588 0.1552 13 6 2.4405 -4.0245 0.3371 14 1 1.8605 -3.4243 1.0226 15 6 1.8300 -5.0655 -0.3701 16 7 2.4877 -5.6890 -1.3151 17 14 0.0764 -5.5664 0.0339 18 1 -0.8677 -4.7793 -0.7995 19 1 -0.1026 -7.0134 -0.2480 20 1 -0.1948 -5.3048 1.4703 21 6 2.1944 -1.1948 -0.0062 22 1 -0.3633 -0.0001 -1.0277 23 1 -0.3633 -0.8900 0.5138 24 1 -0.3634 0.8899 0.5137 25 1 1.6529 2.1329 0.0004 26 1 4.5023 2.8395 -1.0264 27 1 3.7262 3.2772 0.5145 28 1 5.2760 2.4019 0.5156 29 1 5.3640 0.0350 0.0005 30 1 4.5359 -5.8008 0.2115 31 1 2.0645 -6.4111 -1.8053 32 1 1.6545 -2.1302 -0.0115 RHF calculation, no. of doubly occupied orbitals= 44 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259698131.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 07:07:44 Heat of formation + Delta-G solvation = 20.885849 kcal Electronic energy + Delta-G solvation = -16437.091867 eV Core-core repulsion = 13873.292651 eV Total energy + Delta-G solvation = -2563.799216 eV No. of doubly occupied orbitals = 44 Molecular weight (most abundant/longest-lived isotopes) = 259.073 amu Computer time = 0.38 seconds Orbital eigenvalues (eV) -40.27343 -39.05645 -35.35510 -34.26514 -33.93945 -30.93348 -28.26344 -27.69992 -27.15088 -24.82817 -22.63198 -21.62070 -20.52790 -19.11406 -17.55831 -17.04343 -16.76412 -15.99613 -15.86627 -14.97148 -14.90374 -14.54650 -14.21959 -13.94552 -13.85390 -13.66555 -13.32840 -13.21115 -12.93863 -12.77039 -12.71655 -12.45161 -12.16735 -11.99427 -11.66145 -11.55324 -11.03877 -11.00124 -10.54356 -9.30840 -9.16794 -8.87311 -8.67637 -6.40332 -0.23581 0.65640 1.02664 1.19362 1.37043 1.39524 1.48736 1.56604 2.04674 2.23096 2.95491 3.19239 3.99353 4.06432 4.16963 4.45888 4.52641 4.60568 4.68317 4.84199 4.87106 4.88695 4.92342 5.01429 5.08953 5.13974 5.20285 5.33662 5.41913 5.56377 5.81264 5.87259 5.90790 6.08306 6.21582 6.39191 6.59038 6.77739 8.31005 Molecular weight = 259.07amu Principal moments of inertia in cm(-1) A = 0.016230 B = 0.009330 C = 0.006073 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1724.752733 B = 3000.229216 C = 4609.283904 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.086 4.086 3 C -0.149 4.149 4 C -0.083 4.083 5 C -0.105 4.105 6 C -0.163 4.163 7 C 0.029 3.971 8 C -0.314 4.314 9 S 0.146 5.854 10 N -0.499 5.499 11 C 0.114 3.886 12 C 0.030 3.970 13 C -0.446 4.446 14 H 0.094 0.906 15 C 0.038 3.962 16 N -0.838 5.838 17 Si 0.980 3.020 18 H -0.261 1.261 19 H -0.268 1.268 20 H -0.253 1.253 21 C -0.158 4.158 22 H 0.074 0.926 23 H 0.061 0.939 24 H 0.086 0.914 25 H 0.145 0.855 26 H 0.077 0.923 27 H 0.084 0.916 28 H 0.066 0.934 29 H 0.111 0.889 30 H 0.167 0.833 31 H 0.292 0.708 32 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.025 9.842 1.985 11.227 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C -0.087 4.087 3 C -0.168 4.168 4 C -0.083 4.083 5 C -0.162 4.162 6 C -0.182 4.182 7 C 0.027 3.973 8 C -0.441 4.441 9 S 0.298 5.702 10 N -0.315 5.315 11 C -0.090 4.090 12 C 0.016 3.984 13 C -0.480 4.480 14 H 0.111 0.889 15 C -0.177 4.177 16 N -0.465 5.465 17 Si 0.800 3.200 18 H -0.185 1.185 19 H -0.193 1.193 20 H -0.177 1.177 21 C -0.178 4.178 22 H 0.093 0.907 23 H 0.080 0.920 24 H 0.105 0.895 25 H 0.163 0.837 26 H 0.096 0.904 27 H 0.103 0.897 28 H 0.085 0.915 29 H 0.129 0.871 30 H 0.184 0.816 31 H 0.103 0.897 32 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -2.751 9.909 1.519 10.395 hybrid contribution -2.004 -1.372 0.106 2.431 sum -4.755 8.537 1.625 9.906 Atomic orbital electron populations 1.20794 0.89506 1.03353 1.02796 1.20173 0.97355 0.92551 0.98586 1.21135 0.93328 0.97770 1.04539 1.20044 0.94332 0.95316 0.98595 1.20782 0.99858 0.92562 1.02962 1.21148 0.99028 0.91747 1.06294 1.17945 0.92979 0.89482 0.96935 1.23627 0.97625 0.97376 1.25425 1.82487 1.07086 1.04738 1.75863 1.75972 1.24472 1.06357 1.24746 1.23130 0.87930 1.01984 0.95974 1.18430 0.96550 0.88537 0.94907 1.19168 0.92795 1.13943 1.22128 0.88859 1.26700 1.04566 0.93581 0.92804 1.69806 1.40650 1.19187 1.16879 0.85204 0.76204 0.78333 0.80244 1.18541 1.19255 1.17660 1.21960 0.93531 0.99636 1.02648 0.90714 0.91964 0.89477 0.83728 0.90433 0.89743 0.91535 0.87076 0.81592 0.89737 0.84610 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -2.81 10.00 71.23 0.71 -2.10 16 2 C -0.09 -2.95 5.87 -19.91 -0.12 -3.06 16 3 C -0.15 -4.51 9.35 22.37 0.21 -4.30 16 4 C -0.08 -2.63 5.87 -19.91 -0.12 -2.75 16 5 C -0.11 -2.37 10.01 71.24 0.71 -1.65 16 6 C -0.16 -6.35 9.28 22.59 0.21 -6.14 16 7 C 0.03 1.32 5.88 -20.10 -0.12 1.20 16 8 C -0.31 -15.69 6.48 25.20 0.16 -15.53 16 9 S 0.15 6.86 22.84 -56.49 -1.29 5.57 16 10 N -0.50 -25.17 11.96 -59.85 -0.72 -25.89 16 11 C 0.11 5.84 9.99 85.45 0.85 6.70 16 12 C 0.03 1.56 5.29 -21.69 -0.11 1.45 16 13 C -0.45 -22.14 6.78 23.30 0.16 -21.98 16 14 H 0.09 4.50 6.33 -2.91 -0.02 4.48 16 15 C 0.04 1.77 5.37 85.22 0.46 2.23 16 16 N -0.84 -41.51 12.10 21.82 0.26 -41.24 16 17 Si 0.98 35.35 29.57 68.60 2.03 37.37 16 18 H -0.26 -9.13 7.11 99.48 0.71 -8.42 16 19 H -0.27 -9.32 7.11 99.48 0.71 -8.61 16 20 H -0.25 -8.83 7.11 99.48 0.71 -8.12 16 21 C -0.16 -6.71 8.78 22.59 0.20 -6.51 16 22 H 0.07 1.80 8.14 -2.38 -0.02 1.78 16 23 H 0.06 1.65 8.08 -2.39 -0.02 1.63 16 24 H 0.09 1.76 8.08 -2.39 -0.02 1.74 16 25 H 0.15 3.28 8.06 -2.91 -0.02 3.26 16 26 H 0.08 1.57 8.14 -2.39 -0.02 1.55 16 27 H 0.08 1.51 8.08 -2.39 -0.02 1.49 16 28 H 0.07 1.44 8.08 -2.39 -0.02 1.42 16 29 H 0.11 4.20 7.47 -2.91 -0.02 4.17 16 30 H 0.17 8.32 7.67 -2.91 -0.02 8.30 16 31 H 0.29 13.15 8.30 -92.71 -0.77 12.38 16 32 H 0.14 6.17 4.40 -2.91 -0.01 6.15 16 Total: -1.00 -58.07 287.57 4.63 -53.44 By element: Atomic # 1 Polarization: 22.07 SS G_CDS: 1.14 Total: 23.21 kcal Atomic # 6 Polarization: -55.67 SS G_CDS: 3.21 Total: -52.46 kcal Atomic # 7 Polarization: -66.68 SS G_CDS: -0.45 Total: -67.13 kcal Atomic # 14 Polarization: 35.35 SS G_CDS: 2.03 Total: 37.37 kcal Atomic # 16 Polarization: 6.86 SS G_CDS: -1.29 Total: 5.57 kcal Total: -58.07 4.63 -53.44 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259698131.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.327 kcal (2) G-P(sol) polarization free energy of solvation -58.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.254 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.631 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.441 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.38 seconds