Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75873 * 125.18836 * 2 1 4 4 C 1.75887 * 90.98051 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 125.21116 * 180.02562 * 4 3 2 6 6 C 1.33507 * 109.58247 * 359.75330 * 4 3 2 7 7 C 1.33347 * 125.18491 * 180.02562 * 2 1 3 8 8 C 1.50698 * 122.53922 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.46862 * 0.02562 * 8 7 2 10 10 C 1.52996 * 109.47395 * 120.00150 * 8 7 2 11 11 N 1.46901 * 109.47554 * 184.99877 * 10 8 7 12 12 C 1.53006 * 109.46914 * 240.00165 * 8 7 2 13 13 C 1.50699 * 109.46866 * 174.99892 * 12 8 7 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 8 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 8 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13 19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13 21 21 H 1.09004 * 109.47755 * 269.99818 * 1 2 3 22 22 H 1.09002 * 109.47424 * 29.99748 * 1 2 3 23 23 H 1.09007 * 109.47536 * 149.99761 * 1 2 3 24 24 H 1.07994 * 122.55797 * 180.24793 * 6 4 3 25 25 H 1.09002 * 109.47227 * 305.00471 * 10 8 7 26 26 H 1.09004 * 109.46864 * 64.99609 * 10 8 7 27 27 H 1.00900 * 110.99668 * 56.04639 * 11 10 8 28 28 H 1.00892 * 110.99797 * 179.97438 * 11 10 8 29 29 H 1.08993 * 109.46955 * 295.00111 * 12 8 7 30 30 H 1.09000 * 109.47050 * 54.99940 * 12 8 7 31 31 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5205 1.4373 0.0000 4 6 3.9750 0.4485 -0.0008 5 17 5.6002 1.0588 -0.0006 6 6 3.6380 -0.8433 0.0044 7 6 2.2753 -1.0898 -0.0005 8 6 1.7041 -2.4844 -0.0005 9 1 0.6154 -2.4310 -0.0006 10 6 2.1777 -3.2295 -1.2500 11 7 1.5268 -4.5450 -1.3119 12 6 2.1787 -3.2299 1.2485 13 6 1.5109 -4.5794 1.3119 14 1 0.8171 -4.8755 0.5390 15 6 1.7849 -5.4357 2.3573 16 7 2.6293 -5.0749 3.2988 17 14 0.9578 -7.1087 2.4356 18 1 1.3132 -7.8937 1.2263 19 1 1.4182 -7.8323 3.6478 20 1 -0.5153 -6.9304 2.4947 21 1 -0.3635 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 4.3719 -1.6354 0.0089 25 1 1.9170 -2.6530 -2.1376 26 1 3.2590 -3.3607 -1.2068 27 1 0.5223 -4.4529 -1.2879 28 1 1.8232 -5.0569 -2.1293 29 1 3.2598 -3.3611 1.2044 30 1 1.9185 -2.6537 2.1364 31 1 2.8224 -5.6774 4.0340 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = 20.090342 kcal Electronic energy + Delta-G solvation = -15175.751328 eV Core-core repulsion = 12609.484767 eV Total energy + Delta-G solvation = -2566.266562 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -38.80322 -36.64804 -34.94347 -32.32685 -31.71690 -30.03209 -26.72266 -25.18494 -22.68275 -22.36062 -20.63212 -17.73899 -17.17213 -16.40538 -15.33755 -14.52192 -14.48904 -14.00825 -13.81411 -13.54051 -13.22819 -12.76831 -12.63915 -12.30666 -11.98299 -11.67152 -11.50843 -11.05973 -10.95666 -10.70887 -10.56301 -10.38865 -10.27472 -9.77091 -9.43169 -8.90639 -8.27722 -8.13904 -7.98414 -7.46758 -5.74560 -3.68385 1.07288 1.31286 2.02820 2.44569 2.94369 3.47335 3.51897 3.54816 4.67481 5.06209 5.22866 5.36638 5.61364 5.63628 5.69738 5.76098 5.89060 5.96142 6.10396 6.15698 6.24489 6.46999 6.64012 6.91019 7.08724 7.82882 7.87894 7.90767 8.12659 8.32004 8.68578 9.37859 9.90457 11.38458 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.005852 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.326853 B = 4783.749563 C = 5140.748576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.079 4.079 2 C -0.178 4.178 3 S 0.103 5.897 4 C -0.155 4.155 5 Cl -0.028 7.028 6 C -0.089 4.089 7 C -0.073 4.073 8 C -0.031 4.031 9 H 0.070 0.930 10 C 0.089 3.911 11 N -0.813 5.813 12 C 0.042 3.958 13 C -0.477 4.477 14 H 0.083 0.917 15 C 0.045 3.955 16 N -0.911 5.911 17 Si 0.891 3.109 18 H -0.279 1.279 19 H -0.295 1.295 20 H -0.283 1.283 21 H 0.077 0.923 22 H 0.063 0.937 23 H 0.081 0.919 24 H 0.149 0.851 25 H 0.001 0.999 26 H 0.064 0.936 27 H 0.334 0.666 28 H 0.320 0.680 29 H 0.015 0.985 30 H 0.011 0.989 31 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.055 11.739 -9.486 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.137 4.137 2 C -0.295 4.295 3 S 0.366 5.634 4 C -0.297 4.297 5 Cl 0.001 6.999 6 C -0.121 4.121 7 C -0.085 4.085 8 C -0.052 4.052 9 H 0.088 0.912 10 C -0.042 4.042 11 N -0.342 5.342 12 C 0.005 3.995 13 C -0.516 4.516 14 H 0.100 0.900 15 C -0.153 4.153 16 N -0.553 5.553 17 Si 0.720 3.280 18 H -0.205 1.205 19 H -0.221 1.221 20 H -0.209 1.209 21 H 0.095 0.905 22 H 0.082 0.918 23 H 0.100 0.900 24 H 0.167 0.833 25 H 0.019 0.981 26 H 0.082 0.918 27 H 0.147 0.853 28 H 0.132 0.868 29 H 0.033 0.967 30 H 0.029 0.971 31 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -0.704 13.175 -8.649 15.776 hybrid contribution -0.083 -2.006 -0.619 2.101 sum -0.787 11.170 -9.268 14.535 Atomic orbital electron populations 1.20334 0.87643 1.02706 1.03063 1.24288 0.99888 0.94308 1.10981 1.83982 0.94436 1.09173 1.75805 1.24947 0.90098 0.97000 1.17704 1.98333 1.17050 1.87206 1.97344 1.20168 0.97050 0.94732 1.00194 1.18999 0.91718 0.97185 1.00590 1.20249 0.99127 0.87167 0.98658 0.91151 1.21586 0.99199 0.88902 0.94475 1.59002 1.11142 1.18393 1.45634 1.19055 0.96585 0.94624 0.89271 1.21514 1.24563 0.99167 1.06373 0.89967 1.25001 0.95994 0.98121 0.96220 1.69982 1.36240 1.36485 1.12601 0.86692 0.79396 0.85113 0.76779 1.20501 1.22141 1.20893 0.90459 0.91835 0.90034 0.83311 0.98082 0.91774 0.85336 0.86828 0.96714 0.97110 0.93627 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -0.99 9.86 36.00 0.35 -0.63 16 2 C -0.18 -2.72 6.50 -36.02 -0.23 -2.95 16 3 S 0.10 1.44 23.33 -107.50 -2.51 -1.06 16 4 C -0.15 -2.41 7.10 29.08 0.21 -2.20 16 5 Cl -0.03 -0.39 29.29 -51.86 -1.52 -1.90 16 6 C -0.09 -1.52 9.13 -41.15 -0.38 -1.90 16 7 C -0.07 -1.28 4.63 -106.24 -0.49 -1.77 16 8 C -0.03 -0.59 2.26 -91.77 -0.21 -0.80 16 9 H 0.07 1.31 6.18 -51.93 -0.32 0.99 16 10 C 0.09 1.57 5.94 -3.83 -0.02 1.54 16 11 N -0.81 -14.26 6.70 -10.37 -0.07 -14.33 16 12 C 0.04 1.04 4.23 -27.88 -0.12 0.92 16 13 C -0.48 -12.82 7.94 -34.44 -0.27 -13.09 16 14 H 0.08 2.07 5.12 -52.48 -0.27 1.80 16 15 C 0.04 1.28 5.46 -17.82 -0.10 1.18 16 16 N -0.91 -27.82 13.29 55.43 0.74 -27.08 16 17 Si 0.89 22.08 29.54 -169.99 -5.02 17.06 16 18 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 19 H -0.30 -7.41 7.11 56.52 0.40 -7.00 16 20 H -0.28 -6.84 7.11 56.52 0.40 -6.44 16 21 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 22 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 23 H 0.08 1.00 6.70 -51.93 -0.35 0.65 16 24 H 0.15 2.60 7.92 -52.49 -0.42 2.18 16 25 H 0.00 0.02 8.14 -51.93 -0.42 -0.40 16 26 H 0.06 1.18 7.96 -51.93 -0.41 0.77 16 27 H 0.33 5.41 8.27 -39.29 -0.33 5.09 16 28 H 0.32 4.77 9.08 -39.30 -0.36 4.42 16 29 H 0.01 0.40 7.92 -51.93 -0.41 -0.01 16 30 H 0.01 0.29 8.14 -51.93 -0.42 -0.13 16 31 H 0.25 7.47 8.31 -40.82 -0.34 7.13 16 LS Contribution 286.53 15.07 4.32 4.32 Total: -1.00 -30.32 286.53 -9.01 -39.32 By element: Atomic # 1 Polarization: 7.06 SS G_CDS: -3.68 Total: 3.38 kcal Atomic # 6 Polarization: -18.44 SS G_CDS: -1.26 Total: -19.70 kcal Atomic # 7 Polarization: -42.08 SS G_CDS: 0.67 Total: -41.41 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -5.02 Total: 17.06 kcal Atomic # 16 Polarization: 1.44 SS G_CDS: -2.51 Total: -1.06 kcal Atomic # 17 Polarization: -0.39 SS G_CDS: -1.52 Total: -1.90 kcal Total LS contribution 4.32 Total: 4.32 kcal Total: -30.32 -9.01 -39.32 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.414 kcal (2) G-P(sol) polarization free energy of solvation -30.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.097 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.007 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.090 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds