Wall clock time and date at job start Mon Mar 30 2020 06:38:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 S 1.75873 * 125.18836 * 2 1 4 4 C 1.75887 * 90.98051 * 180.02562 * 3 2 1 5 5 Cl 1.73599 * 125.21116 * 180.02562 * 4 3 2 6 6 C 1.33507 * 109.58247 * 359.75330 * 4 3 2 7 7 C 1.33347 * 125.18491 * 180.02562 * 2 1 3 8 8 C 1.50698 * 122.53922 * 359.97438 * 7 2 1 9 9 H 1.09000 * 109.46862 * 0.02562 * 8 7 2 10 10 C 1.52996 * 109.47395 * 120.00150 * 8 7 2 11 11 N 1.46901 * 109.47554 * 184.99877 * 10 8 7 12 12 C 1.53006 * 109.46914 * 240.00165 * 8 7 2 13 13 C 1.50699 * 109.46866 * 174.99892 * 12 8 7 14 14 H 1.08003 * 119.99962 * 359.97438 * 13 12 8 15 15 C 1.37874 * 120.00270 * 180.02562 * 13 12 8 16 16 N 1.31522 * 119.99834 * 359.97438 * 15 13 12 17 17 Si 1.86793 * 120.00496 * 180.02562 * 15 13 12 18 18 H 1.48494 * 109.47325 * 59.99531 * 17 15 13 19 19 H 1.48496 * 109.47425 * 179.97438 * 17 15 13 20 20 H 1.48505 * 109.47183 * 299.99726 * 17 15 13 21 21 H 1.09004 * 109.47755 * 269.99818 * 1 2 3 22 22 H 1.09002 * 109.47424 * 29.99748 * 1 2 3 23 23 H 1.09007 * 109.47536 * 149.99761 * 1 2 3 24 24 H 1.07994 * 122.55797 * 180.24793 * 6 4 3 25 25 H 1.09002 * 109.47227 * 305.00471 * 10 8 7 26 26 H 1.09004 * 109.46864 * 64.99609 * 10 8 7 27 27 H 1.00900 * 110.99668 * 56.04639 * 11 10 8 28 28 H 1.00892 * 110.99797 * 179.97438 * 11 10 8 29 29 H 1.08993 * 109.46955 * 295.00111 * 12 8 7 30 30 H 1.09000 * 109.47050 * 54.99940 * 12 8 7 31 31 H 0.96992 * 120.00032 * 180.02562 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5205 1.4373 0.0000 4 6 3.9750 0.4485 -0.0008 5 17 5.6002 1.0588 -0.0006 6 6 3.6380 -0.8433 0.0044 7 6 2.2753 -1.0898 -0.0005 8 6 1.7041 -2.4844 -0.0005 9 1 0.6154 -2.4310 -0.0006 10 6 2.1777 -3.2295 -1.2500 11 7 1.5268 -4.5450 -1.3119 12 6 2.1787 -3.2299 1.2485 13 6 1.5109 -4.5794 1.3119 14 1 0.8171 -4.8755 0.5390 15 6 1.7849 -5.4357 2.3573 16 7 2.6293 -5.0749 3.2988 17 14 0.9578 -7.1087 2.4356 18 1 1.3132 -7.8937 1.2263 19 1 1.4182 -7.8323 3.6478 20 1 -0.5153 -6.9304 2.4947 21 1 -0.3635 0.0000 1.0277 22 1 -0.3634 0.8900 -0.5138 23 1 -0.3634 -0.8900 -0.5139 24 1 4.3719 -1.6354 0.0089 25 1 1.9170 -2.6530 -2.1376 26 1 3.2590 -3.3607 -1.2068 27 1 0.5223 -4.4529 -1.2879 28 1 1.8232 -5.0569 -2.1293 29 1 3.2598 -3.3611 1.2044 30 1 1.9185 -2.6537 2.1364 31 1 2.8224 -5.6774 4.0340 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723351.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:22 Heat of formation + Delta-G solvation = 1.583709 kcal Electronic energy + Delta-G solvation = -15176.553836 eV Core-core repulsion = 12609.484767 eV Total energy + Delta-G solvation = -2567.069069 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.14190 -37.83912 -36.44324 -34.34138 -32.87389 -31.65666 -28.47338 -26.52551 -24.43979 -23.71204 -22.19126 -19.16223 -18.39520 -18.22168 -16.82484 -16.38423 -15.99317 -15.47939 -15.16540 -14.81710 -14.51085 -14.16597 -13.85576 -13.82901 -13.54417 -13.26244 -12.78132 -12.73610 -12.61998 -12.33836 -12.15931 -11.80483 -11.70643 -11.44698 -11.26688 -10.87383 -10.32700 -9.45914 -9.23846 -8.92338 -7.92957 -5.91988 -0.16377 0.13277 0.80504 1.25358 1.49488 1.53443 1.59100 1.63266 2.60758 3.42118 3.83993 4.01050 4.10700 4.38515 4.43202 4.52678 4.65078 4.68737 4.80368 4.95279 5.06857 5.11305 5.22573 5.38739 5.55813 5.73566 5.90975 6.08400 6.53342 6.62870 6.93324 7.25950 7.71267 9.20711 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.025234 B = 0.005852 C = 0.005445 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1109.326853 B = 4783.749563 C = 5140.748576 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.082 4.082 2 C -0.174 4.174 3 S 0.164 5.836 4 C -0.166 4.166 5 Cl -0.016 7.016 6 C -0.109 4.109 7 C -0.103 4.103 8 C -0.017 4.017 9 H 0.080 0.920 10 C 0.096 3.904 11 N -0.834 5.834 12 C 0.051 3.949 13 C -0.474 4.474 14 H 0.103 0.897 15 C -0.021 4.021 16 N -0.957 5.957 17 Si 0.958 3.042 18 H -0.271 1.271 19 H -0.303 1.303 20 H -0.268 1.268 21 H 0.078 0.922 22 H 0.092 0.908 23 H 0.085 0.915 24 H 0.132 0.868 25 H 0.029 0.971 26 H 0.046 0.954 27 H 0.342 0.658 28 H 0.336 0.664 29 H -0.020 1.020 30 H -0.026 1.026 31 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.713 12.592 -11.019 16.951 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.291 4.291 3 S 0.427 5.573 4 C -0.309 4.309 5 Cl 0.012 6.988 6 C -0.141 4.141 7 C -0.115 4.115 8 C -0.038 4.038 9 H 0.098 0.902 10 C -0.035 4.035 11 N -0.366 5.366 12 C 0.014 3.986 13 C -0.512 4.512 14 H 0.120 0.880 15 C -0.214 4.214 16 N -0.602 5.602 17 Si 0.785 3.215 18 H -0.196 1.196 19 H -0.230 1.230 20 H -0.194 1.194 21 H 0.097 0.903 22 H 0.111 0.889 23 H 0.104 0.896 24 H 0.150 0.850 25 H 0.047 0.953 26 H 0.065 0.935 27 H 0.156 0.844 28 H 0.150 0.850 29 H -0.002 1.002 30 H -0.008 1.008 31 H 0.058 0.942 Dipole moment (debyes) X Y Z Total from point charges -2.377 14.031 -10.214 17.517 hybrid contribution 0.461 -2.151 -0.162 2.205 sum -1.916 11.880 -10.376 15.889 Atomic orbital electron populations 1.20486 0.85584 1.04390 1.03637 1.24726 1.01472 0.94536 1.08399 1.83758 0.92261 1.07105 1.74210 1.25133 0.91546 0.97171 1.17083 1.98334 1.16331 1.86873 1.97249 1.20083 0.96979 0.95175 1.01909 1.18832 0.92100 0.96884 1.03658 1.19944 0.99459 0.87997 0.96417 0.90229 1.21446 0.98137 0.89199 0.94677 1.58843 1.11912 1.18722 1.47090 1.18856 0.94356 0.94524 0.90867 1.22082 1.23650 0.99516 1.05985 0.87975 1.25912 0.96986 1.02237 0.96275 1.70164 1.38569 1.37853 1.13564 0.85610 0.78935 0.80478 0.76479 1.19613 1.22997 1.19351 0.90298 0.88935 0.89624 0.85020 0.95258 0.93504 0.84365 0.85022 1.00182 1.00798 0.94182 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.83 9.86 71.23 0.70 -1.13 16 2 C -0.17 -4.98 6.50 24.58 0.16 -4.82 16 3 S 0.16 4.18 23.33 -56.49 -1.32 2.86 16 4 C -0.17 -5.06 7.10 66.75 0.47 -4.58 16 5 Cl -0.02 -0.44 29.29 -2.72 -0.08 -0.52 16 6 C -0.11 -3.79 9.13 21.25 0.19 -3.59 16 7 C -0.10 -3.56 4.63 -20.91 -0.10 -3.65 16 8 C -0.02 -0.66 2.26 -11.54 -0.03 -0.68 16 9 H 0.08 2.86 6.18 -2.39 -0.01 2.84 16 10 C 0.10 3.30 5.94 86.30 0.51 3.81 16 11 N -0.83 -28.00 6.70 -186.72 -1.25 -29.25 16 12 C 0.05 2.64 4.23 29.85 0.13 2.76 16 13 C -0.47 -25.59 7.94 25.60 0.20 -25.39 16 14 H 0.10 5.02 5.12 -2.91 -0.01 5.00 16 15 C -0.02 -1.20 5.46 84.65 0.46 -0.74 16 16 N -0.96 -60.38 13.29 21.45 0.28 -60.09 16 17 Si 0.96 45.54 29.54 68.60 2.03 47.57 16 18 H -0.27 -12.41 7.11 99.48 0.71 -11.71 16 19 H -0.30 -14.71 7.11 99.48 0.71 -14.01 16 20 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 21 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 22 H 0.09 1.52 8.14 -2.39 -0.02 1.50 16 23 H 0.09 1.85 6.70 -2.38 -0.02 1.84 16 24 H 0.13 4.90 7.92 -2.91 -0.02 4.88 16 25 H 0.03 0.86 8.14 -2.39 -0.02 0.84 16 26 H 0.05 1.75 7.96 -2.38 -0.02 1.73 16 27 H 0.34 10.33 8.27 -89.69 -0.74 9.59 16 28 H 0.34 9.43 9.08 -89.70 -0.81 8.61 16 29 H -0.02 -1.17 7.92 -2.39 -0.02 -1.19 16 30 H -0.03 -1.53 8.14 -2.39 -0.02 -1.55 16 31 H 0.25 15.19 8.31 -92.71 -0.77 14.42 16 Total: -1.00 -66.20 286.53 1.98 -64.22 By element: Atomic # 1 Polarization: 13.61 SS G_CDS: -0.39 Total: 13.22 kcal Atomic # 6 Polarization: -40.72 SS G_CDS: 2.71 Total: -38.01 kcal Atomic # 7 Polarization: -88.38 SS G_CDS: -0.97 Total: -89.34 kcal Atomic # 14 Polarization: 45.54 SS G_CDS: 2.03 Total: 47.57 kcal Atomic # 16 Polarization: 4.18 SS G_CDS: -1.32 Total: 2.86 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.52 kcal Total: -66.20 1.98 -64.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723351.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.800 kcal (2) G-P(sol) polarization free energy of solvation -66.200 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.983 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.216 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.584 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds