Wall clock time and date at job start Mon Mar 30 2020 06:38:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75876 * 125.18716 * 2 1 4 4 C 1.75885 * 90.98079 * 180.20688 * 3 2 1 5 5 Cl 1.73601 * 125.20794 * 179.77781 * 4 3 2 6 6 C 1.33505 * 109.57904 * 359.81573 * 4 3 2 7 7 C 1.33344 * 125.19096 * 179.86337 * 2 1 3 8 8 C 1.50699 * 122.53569 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46963 * 359.73687 * 8 7 2 10 10 C 1.53004 * 109.47110 * 239.74258 * 8 7 2 11 11 N 1.46900 * 109.47356 * 64.99596 * 10 8 7 12 12 C 1.52997 * 109.47337 * 119.73995 * 8 7 2 13 13 C 1.50701 * 109.47212 * 184.99952 * 12 8 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.09001 * 109.46954 * 270.13995 * 1 2 3 22 22 H 1.08994 * 109.47701 * 30.13968 * 1 2 3 23 23 H 1.08999 * 109.47151 * 150.14171 * 1 2 3 24 24 H 1.08002 * 122.55197 * 180.02562 * 6 4 3 25 25 H 1.08998 * 109.46828 * 184.99846 * 10 8 7 26 26 H 1.09002 * 109.47067 * 304.99702 * 10 8 7 27 27 H 1.00898 * 110.99992 * 179.97438 * 11 10 8 28 28 H 1.00897 * 111.00435 * 303.96024 * 11 10 8 29 29 H 1.09002 * 109.47153 * 64.99954 * 12 8 7 30 30 H 1.09001 * 109.46832 * 305.00144 * 12 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5205 1.4374 0.0000 4 6 3.9751 0.4486 -0.0063 5 17 5.6003 1.0590 -0.0154 6 6 3.6380 -0.8432 -0.0040 7 6 2.2755 -1.0897 0.0026 8 6 1.7043 -2.4843 0.0065 9 1 0.6156 -2.4309 0.0115 10 6 2.1841 -3.2284 1.2543 11 7 1.6349 -2.5801 2.4526 12 6 2.1727 -3.2308 -1.2442 13 6 1.5047 -4.5804 -1.3033 14 1 0.8148 -4.8759 -0.5268 15 6 1.7736 -5.4374 -2.3494 16 7 2.6134 -5.0773 -3.2952 17 14 0.9451 -7.1100 -2.4231 18 1 -0.3330 -6.9967 -3.1706 19 1 1.8384 -8.0749 -3.1132 20 1 0.6713 -7.5879 -1.0441 21 1 -0.3633 0.0025 1.0277 22 1 -0.3634 0.8886 -0.5160 23 1 -0.3633 -0.8912 -0.5116 24 1 4.3721 -1.6353 -0.0066 25 1 1.8445 -4.2633 1.2131 26 1 3.2731 -3.2047 1.2952 27 1 1.9372 -3.0537 3.2907 28 1 1.8821 -1.6023 2.4803 29 1 3.2541 -3.3620 -1.2054 30 1 1.9082 -2.6552 -2.1312 31 1 2.8029 -5.6804 -4.0310 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000259723354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:25 Heat of formation + Delta-G solvation = 4.243497 kcal Electronic energy + Delta-G solvation = -15161.285168 eV Core-core repulsion = 12594.331436 eV Total energy + Delta-G solvation = -2566.953732 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.86588 -36.65555 -34.66472 -32.84867 -31.65541 -30.42390 -26.59357 -25.06751 -22.93806 -22.39547 -20.73566 -17.52437 -17.07884 -16.52406 -15.58357 -15.24127 -14.46845 -14.01290 -13.78533 -13.53631 -13.07757 -12.77672 -12.70448 -12.22070 -12.04408 -11.62321 -11.49486 -11.16994 -11.06609 -10.90036 -10.57928 -10.53570 -10.28808 -9.90514 -9.51598 -9.05110 -8.37592 -8.27770 -8.22458 -7.93550 -6.01602 -4.04239 1.08313 1.32184 2.04708 2.44472 2.95010 3.31256 3.38078 3.40991 4.44773 5.10181 5.14302 5.35111 5.45208 5.52211 5.79519 5.84413 5.96396 5.98830 6.18170 6.21739 6.39160 6.57327 6.79336 6.94172 7.02816 7.54452 7.69183 7.73339 7.87081 7.97619 8.37447 9.02106 9.59934 11.09318 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.005946 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.346130 B = 4708.231502 C = 5098.438602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.080 4.080 2 C -0.169 4.169 3 S 0.102 5.898 4 C -0.156 4.156 5 Cl -0.029 7.029 6 C -0.093 4.093 7 C -0.077 4.077 8 C -0.026 4.026 9 H 0.081 0.919 10 C 0.077 3.923 11 N -0.852 5.852 12 C 0.034 3.966 13 C -0.519 4.519 14 H 0.059 0.941 15 C 0.058 3.942 16 N -0.893 5.893 17 Si 0.890 3.110 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.273 1.273 21 H 0.075 0.925 22 H 0.062 0.938 23 H 0.087 0.913 24 H 0.146 0.854 25 H 0.088 0.912 26 H 0.018 0.982 27 H 0.331 0.669 28 H 0.331 0.669 29 H 0.017 0.983 30 H 0.019 0.981 31 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.652 11.582 8.435 14.343 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.286 4.286 3 S 0.365 5.635 4 C -0.299 4.299 5 Cl -0.001 7.001 6 C -0.125 4.125 7 C -0.088 4.088 8 C -0.047 4.047 9 H 0.099 0.901 10 C -0.053 4.053 11 N -0.380 5.380 12 C -0.003 4.003 13 C -0.557 4.557 14 H 0.077 0.923 15 C -0.143 4.143 16 N -0.533 5.533 17 Si 0.718 3.282 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.198 1.198 21 H 0.094 0.906 22 H 0.081 0.919 23 H 0.105 0.895 24 H 0.164 0.836 25 H 0.106 0.894 26 H 0.036 0.964 27 H 0.142 0.858 28 H 0.142 0.858 29 H 0.035 0.965 30 H 0.037 0.963 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -0.078 12.964 7.963 15.214 hybrid contribution 1.296 -2.157 -0.041 2.517 sum 1.218 10.807 7.922 13.455 Atomic orbital electron populations 1.20355 0.87487 1.03229 1.02765 1.24318 0.99969 0.94026 1.10286 1.84017 0.94388 1.09365 1.75749 1.24944 0.90085 0.97018 1.17835 1.98332 1.17168 1.87224 1.97356 1.20163 0.97120 0.94665 1.00579 1.19048 0.91466 0.97497 1.00801 1.20241 1.00115 0.87308 0.97022 0.90124 1.21839 0.95638 0.99306 0.88547 1.58854 1.67602 1.06657 1.04871 1.19100 0.96622 0.94228 0.90389 1.21219 1.26009 1.00394 1.08071 0.92294 1.25007 0.95214 0.98384 0.95701 1.69969 1.34875 1.36600 1.11807 0.86627 0.79342 0.84059 0.78186 1.20679 1.21337 1.19828 0.90623 0.91899 0.89465 0.83604 0.89403 0.96370 0.85828 0.85759 0.96456 0.96260 0.93009 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.05 9.86 36.01 0.35 -0.69 16 2 C -0.17 -2.59 6.50 -36.02 -0.23 -2.83 16 3 S 0.10 1.42 23.33 -107.50 -2.51 -1.09 16 4 C -0.16 -2.40 7.10 29.08 0.21 -2.19 16 5 Cl -0.03 -0.40 29.29 -51.86 -1.52 -1.92 16 6 C -0.09 -1.57 8.99 -41.15 -0.37 -1.94 16 7 C -0.08 -1.33 3.66 -106.25 -0.39 -1.72 16 8 C -0.03 -0.50 2.16 -91.77 -0.20 -0.70 16 9 H 0.08 1.61 6.18 -51.93 -0.32 1.29 16 10 C 0.08 1.39 6.05 -3.82 -0.02 1.36 16 11 N -0.85 -12.77 9.62 -10.37 -0.10 -12.87 16 12 C 0.03 0.85 4.23 -27.88 -0.12 0.73 16 13 C -0.52 -13.93 8.34 -34.44 -0.29 -14.22 16 14 H 0.06 1.54 7.08 -52.49 -0.37 1.17 16 15 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 16 N -0.89 -26.29 13.29 55.43 0.74 -25.55 16 17 Si 0.89 21.21 29.54 -169.99 -5.02 16.18 16 18 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 19 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 20 H -0.27 -6.37 7.11 56.52 0.40 -5.97 16 21 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 22 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 23 H 0.09 1.26 6.71 -51.93 -0.35 0.91 16 24 H 0.15 2.53 7.78 -52.49 -0.41 2.12 16 25 H 0.09 1.75 6.82 -51.93 -0.35 1.40 16 26 H 0.02 0.32 7.54 -51.93 -0.39 -0.07 16 27 H 0.33 4.26 9.08 -39.29 -0.36 3.91 16 28 H 0.33 4.74 8.07 -39.29 -0.32 4.42 16 29 H 0.02 0.45 7.94 -51.93 -0.41 0.04 16 30 H 0.02 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.26 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 288.64 15.07 4.35 4.35 Total: -1.00 -28.32 288.64 -8.90 -37.22 By element: Atomic # 1 Polarization: 8.03 SS G_CDS: -3.68 Total: 4.35 kcal Atomic # 6 Polarization: -19.52 SS G_CDS: -1.16 Total: -20.68 kcal Atomic # 7 Polarization: -39.05 SS G_CDS: 0.64 Total: -38.42 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.18 kcal Atomic # 16 Polarization: 1.42 SS G_CDS: -2.51 Total: -1.09 kcal Atomic # 17 Polarization: -0.40 SS G_CDS: -1.52 Total: -1.92 kcal Total LS contribution 4.35 Total: 4.35 kcal Total: -28.32 -8.90 -37.22 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.468 kcal (2) G-P(sol) polarization free energy of solvation -28.325 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.143 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.900 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.225 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.243 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds