Wall clock time and date at job start Mon Mar 30 2020 06:38:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50703 * 1 3 3 S 1.75876 * 125.18716 * 2 1 4 4 C 1.75885 * 90.98079 * 180.20688 * 3 2 1 5 5 Cl 1.73601 * 125.20794 * 179.77781 * 4 3 2 6 6 C 1.33505 * 109.57904 * 359.81573 * 4 3 2 7 7 C 1.33344 * 125.19096 * 179.86337 * 2 1 3 8 8 C 1.50699 * 122.53569 * 359.97438 * 7 2 1 9 9 H 1.09004 * 109.46963 * 359.73687 * 8 7 2 10 10 C 1.53004 * 109.47110 * 239.74258 * 8 7 2 11 11 N 1.46900 * 109.47356 * 64.99596 * 10 8 7 12 12 C 1.52997 * 109.47337 * 119.73995 * 8 7 2 13 13 C 1.50701 * 109.47212 * 184.99952 * 12 8 7 14 14 H 1.07998 * 120.00129 * 0.02562 * 13 12 8 15 15 C 1.37880 * 119.99861 * 179.97438 * 13 12 8 16 16 N 1.31510 * 119.99913 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99734 * 180.02562 * 15 13 12 18 18 H 1.48499 * 109.47094 * 90.00289 * 17 15 13 19 19 H 1.48505 * 109.47195 * 210.00171 * 17 15 13 20 20 H 1.48493 * 109.47449 * 330.00136 * 17 15 13 21 21 H 1.09001 * 109.46954 * 270.13995 * 1 2 3 22 22 H 1.08994 * 109.47701 * 30.13968 * 1 2 3 23 23 H 1.08999 * 109.47151 * 150.14171 * 1 2 3 24 24 H 1.08002 * 122.55197 * 180.02562 * 6 4 3 25 25 H 1.08998 * 109.46828 * 184.99846 * 10 8 7 26 26 H 1.09002 * 109.47067 * 304.99702 * 10 8 7 27 27 H 1.00898 * 110.99992 * 179.97438 * 11 10 8 28 28 H 1.00897 * 111.00435 * 303.96024 * 11 10 8 29 29 H 1.09002 * 109.47153 * 64.99954 * 12 8 7 30 30 H 1.09001 * 109.46832 * 305.00144 * 12 8 7 31 31 H 0.97002 * 119.99768 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 16 2.5205 1.4374 0.0000 4 6 3.9751 0.4486 -0.0063 5 17 5.6003 1.0590 -0.0154 6 6 3.6380 -0.8432 -0.0040 7 6 2.2755 -1.0897 0.0026 8 6 1.7043 -2.4843 0.0065 9 1 0.6156 -2.4309 0.0115 10 6 2.1841 -3.2284 1.2543 11 7 1.6349 -2.5801 2.4526 12 6 2.1727 -3.2308 -1.2442 13 6 1.5047 -4.5804 -1.3033 14 1 0.8148 -4.8759 -0.5268 15 6 1.7736 -5.4374 -2.3494 16 7 2.6134 -5.0773 -3.2952 17 14 0.9451 -7.1100 -2.4231 18 1 -0.3330 -6.9967 -3.1706 19 1 1.8384 -8.0749 -3.1132 20 1 0.6713 -7.5879 -1.0441 21 1 -0.3633 0.0025 1.0277 22 1 -0.3634 0.8886 -0.5160 23 1 -0.3633 -0.8912 -0.5116 24 1 4.3721 -1.6353 -0.0066 25 1 1.8445 -4.2633 1.2131 26 1 3.2731 -3.2047 1.2952 27 1 1.9372 -3.0537 3.2907 28 1 1.8821 -1.6023 2.4803 29 1 3.2541 -3.3620 -1.2054 30 1 1.9082 -2.6552 -2.1312 31 1 2.8029 -5.6804 -4.0310 RHF calculation, no. of doubly occupied orbitals= 42 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000259723354.mol2 31 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 06:38:24 Heat of formation + Delta-G solvation = -12.869463 kcal Electronic energy + Delta-G solvation = -15162.027242 eV Core-core repulsion = 12594.331436 eV Total energy + Delta-G solvation = -2567.695806 eV No. of doubly occupied orbitals = 42 Molecular weight (most abundant/longest-lived isotopes) = 259.049 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -40.21921 -37.83489 -36.17698 -34.74581 -32.85194 -32.10298 -28.23633 -26.53575 -24.59944 -23.78401 -22.30610 -18.89296 -18.49166 -18.29088 -17.03907 -16.75625 -16.23614 -15.43797 -15.01586 -14.80723 -14.53477 -14.07993 -14.04962 -13.80342 -13.74192 -13.00495 -12.87054 -12.77869 -12.72722 -12.54132 -12.18483 -11.82559 -11.72943 -11.62548 -11.32988 -10.97394 -10.51714 -9.53882 -9.44493 -9.19206 -8.15426 -6.25217 -0.15621 0.14041 0.81552 1.25402 1.42823 1.42951 1.53872 1.63286 2.44059 3.18035 3.79547 3.93587 4.17260 4.22835 4.49021 4.51687 4.66092 4.80545 4.85765 4.95325 5.01919 5.13334 5.32588 5.38733 5.50885 5.53717 5.80984 5.88593 6.27940 6.30822 6.71555 6.90660 7.43504 8.95964 Molecular weight = 259.05amu Principal moments of inertia in cm(-1) A = 0.023458 B = 0.005946 C = 0.005491 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1193.346130 B = 4708.231502 C = 5098.438602 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.081 4.081 2 C -0.168 4.168 3 S 0.168 5.832 4 C -0.166 4.166 5 Cl -0.016 7.016 6 C -0.111 4.111 7 C -0.102 4.102 8 C -0.012 4.012 9 H 0.077 0.923 10 C 0.087 3.913 11 N -0.843 5.843 12 C 0.045 3.955 13 C -0.528 4.528 14 H 0.064 0.936 15 C 0.002 3.998 16 N -0.933 5.933 17 Si 0.958 3.042 18 H -0.274 1.274 19 H -0.286 1.286 20 H -0.262 1.262 21 H 0.094 0.906 22 H 0.085 0.915 23 H 0.070 0.930 24 H 0.131 0.869 25 H 0.066 0.934 26 H 0.014 0.986 27 H 0.346 0.654 28 H 0.339 0.661 29 H -0.009 1.009 30 H -0.015 1.015 31 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 12.601 9.631 15.865 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.286 4.286 3 S 0.431 5.569 4 C -0.308 4.308 5 Cl 0.012 6.988 6 C -0.144 4.144 7 C -0.112 4.112 8 C -0.033 4.033 9 H 0.095 0.905 10 C -0.044 4.044 11 N -0.373 5.373 12 C 0.007 3.993 13 C -0.566 4.566 14 H 0.082 0.918 15 C -0.196 4.196 16 N -0.574 5.574 17 Si 0.783 3.217 18 H -0.200 1.200 19 H -0.212 1.212 20 H -0.186 1.186 21 H 0.113 0.887 22 H 0.104 0.896 23 H 0.089 0.911 24 H 0.148 0.852 25 H 0.085 0.915 26 H 0.032 0.968 27 H 0.159 0.841 28 H 0.151 0.849 29 H 0.009 0.991 30 H 0.004 0.996 31 H 0.070 0.930 Dipole moment (debyes) X Y Z Total from point charges -1.131 13.992 9.188 16.777 hybrid contribution 1.646 -2.353 -0.403 2.900 sum 0.515 11.639 8.785 14.591 Atomic orbital electron populations 1.20455 0.85916 1.03543 1.04064 1.24680 1.01291 0.94554 1.08026 1.83784 0.92083 1.06943 1.74099 1.25119 0.91551 0.97144 1.17029 1.98335 1.16349 1.86874 1.97246 1.20043 0.96847 0.95154 1.02324 1.18779 0.91923 0.96767 1.03772 1.19870 0.99688 0.88557 0.95141 0.90509 1.21553 0.95302 0.98119 0.89400 1.58722 1.67148 1.07103 1.04308 1.18892 0.94792 0.93843 0.91767 1.21618 1.25727 1.01326 1.07950 0.91750 1.25902 0.95866 1.02434 0.95398 1.70109 1.36584 1.38109 1.12608 0.85546 0.78258 0.79211 0.78655 1.19981 1.21216 1.18600 0.88726 0.89643 0.91092 0.85158 0.91548 0.96823 0.84142 0.84878 0.99091 0.99619 0.93022 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.08 -1.96 9.86 71.24 0.70 -1.26 16 2 C -0.17 -4.87 6.50 24.58 0.16 -4.72 16 3 S 0.17 4.23 23.33 -56.49 -1.32 2.91 16 4 C -0.17 -4.91 7.10 66.75 0.47 -4.44 16 5 Cl -0.02 -0.44 29.29 -2.72 -0.08 -0.51 16 6 C -0.11 -3.78 8.99 21.25 0.19 -3.59 16 7 C -0.10 -3.50 3.66 -20.92 -0.08 -3.58 16 8 C -0.01 -0.46 2.16 -11.54 -0.02 -0.48 16 9 H 0.08 3.09 6.18 -2.39 -0.01 3.07 16 10 C 0.09 3.17 6.05 86.30 0.52 3.69 16 11 N -0.84 -24.15 9.62 -186.71 -1.80 -25.95 16 12 C 0.04 2.31 4.23 29.85 0.13 2.43 16 13 C -0.53 -29.04 8.34 25.60 0.21 -28.83 16 14 H 0.06 3.40 7.08 -2.91 -0.02 3.38 16 15 C 0.00 0.09 5.46 84.66 0.46 0.55 16 16 N -0.93 -56.52 13.29 21.45 0.28 -56.24 16 17 Si 0.96 43.85 29.54 68.60 2.03 45.88 16 18 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 19 H -0.29 -12.97 7.11 99.48 0.71 -12.26 16 20 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 21 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 22 H 0.08 1.67 8.14 -2.39 -0.02 1.65 16 23 H 0.07 1.98 6.71 -2.39 -0.02 1.96 16 24 H 0.13 4.74 7.78 -2.91 -0.02 4.72 16 25 H 0.07 2.68 6.82 -2.39 -0.02 2.66 16 26 H 0.01 0.50 7.54 -2.39 -0.02 0.48 16 27 H 0.35 8.32 9.08 -89.70 -0.81 7.51 16 28 H 0.34 9.09 8.07 -89.70 -0.72 8.37 16 29 H -0.01 -0.52 7.94 -2.39 -0.02 -0.54 16 30 H -0.01 -0.84 8.14 -2.39 -0.02 -0.86 16 31 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 Total: -1.00 -61.54 288.64 1.49 -60.05 By element: Atomic # 1 Polarization: 14.45 SS G_CDS: -0.37 Total: 14.08 kcal Atomic # 6 Polarization: -42.96 SS G_CDS: 2.75 Total: -40.21 kcal Atomic # 7 Polarization: -80.68 SS G_CDS: -1.51 Total: -82.19 kcal Atomic # 14 Polarization: 43.85 SS G_CDS: 2.03 Total: 45.88 kcal Atomic # 16 Polarization: 4.23 SS G_CDS: -1.32 Total: 2.91 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -0.08 Total: -0.51 kcal Total: -61.54 1.49 -60.05 kcal The number of atoms in the molecule is 31 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000259723354.mol2 31 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.178 kcal (2) G-P(sol) polarization free energy of solvation -61.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.362 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.869 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds